Rorug01G0115300

methyltransferase DDB_G0268948

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001059
Physical Location & Seq
Reverse (-)
20309550 .. 20311299
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0115300.1

Sequence Viewer

Length: 402 bp
ATGCTAACTTCTGCAAAAGGATCAGCTTTCTCAATATTTACTGCATATACTGAGATTAGTAAGAACCTTGGGAGTAAATATGCAATTGTCACCGATAGATGGCAAAAGTTCAGTGATGTGTATCTTGACAAGAAAATATTAGACTTCCTTGCCAAGTATGCAGACGAGTTTCTGGTACATGGTGTCGATGTTGAAGGGAAAAAACTGGGGATTGATGAAGAGCTTGTGGAGTTGCTTGGCAAACATTCTCCGGTTGTAATGGCTGATTTAGAGAGAATAAAAGTGGCAGGGCTAGGACATGTGGATGTTACTGTCGGCAGCGCTTTGGATGTTTTCGGGGGCAACTTTCCGTACAAAGAAGTCGTTGCTTGGCATACTCAGCAGGAAGCATTGACTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

133

Amino Acids

14.68

Weight (kDa)

5.29

Isoelectric Point (pI)

19.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 28
AfaI GTAC 2 cut(s) 177, 353
AfeI AGCGCT 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 2 cut(s) 26, 223
AluI AGCT 2 cut(s) 26, 223
AlwI GGATC 1 cut(s) 28
Aor51HI AGCGCT 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 318
AspLEI GCGC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 82
BbvI GCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 93
BfaI CTAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 324
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
BmrI ACTGGG 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 2 cut(s) 310, 334
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 42, 392
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 99
Bsp143I GATC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 43, 391
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 313, 397
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 2 cut(s) 51, 378
BstF5I GGATG 2 cut(s) 310, 334
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 158, 379
BstNSI RCATGY 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 330
BtsCI GGATG 2 cut(s) 310, 334
BtsIMutI CAGTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 176, 352
CviAII CATG 2 cut(s) 179, 299
CviJI RGCY 4 cut(s) 26, 223, 263, 292
CviKI_1 RGCY 4 cut(s) 26, 223, 263, 292
CviQI GTAC 2 cut(s) 176, 352
DdeI CTNAG 2 cut(s) 51, 378
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 67
Eco47III AGCGCT 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 182, 302
FaiI YATR 7 cut(s) 46, 48, 81, 159, 180, 300, 375
FatI CATG 2 cut(s) 178, 298
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 2 cut(s) 317, 341
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 324
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 182, 302
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 313, 397
HpyCH4V TGCA 4 cut(s) 14, 44, 83, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 379
HpyF3I CTNAG 2 cut(s) 51, 378
Hsp92II CATG 2 cut(s) 182, 302
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 5 cut(s) 158, 191, 264, 273, 368
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 88, 307
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 1 cut(s) 230
MfeI CAATTG 1 cut(s) 84
MluCI AATT 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 158, 379
NdeII GATC 1 cut(s) 20
NlaIII CATG 2 cut(s) 182, 302
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 302
PciI ACATGT 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 320
PscI ACATGT 1 cut(s) 298
RsaI GTAC 2 cut(s) 177, 353
RsaNI GTAC 2 cut(s) 176, 352
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 213
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 1 cut(s) 20
SetI ASST 3 cut(s) 28, 69, 225
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 1 cut(s) 84
SspI AATATT 2 cut(s) 36, 138
SspMI CTAG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 313, 397
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 84
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 1 cut(s) 118
XceI RCATGY 1 cut(s) 302
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.