Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8423201.1

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

317 .. 829

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8423201.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggtcaacttaatagccggtggtcatgaaaattcagtggacttggttacagtggcggaagctgttcactggtttgatcttcctcatttctattcactcgtcagacgccttctgcgcaaaccaggaggcgtaattgcagtttggggctacaacgacatggtagtaagccccgattttgatcttttaatgaagcgttaccacgaaaagatgttaccatattatgacccgaaatcaagctacttatgggagggttataggacacttccatttccatttgagagtgttggattaggtcgtgaaggagagcctatggcacttgaaatacataaggaactttcatttcaggggcttctgaagcttctgaggtcttcctctgcagtcactacggctaaagacaagggtgtggatttgttgtctgaagaggtgattgaagagattcaaggagtttggggtgggcctgatctggttagatctgttacgtacaaggcttttatgcttgctggcaaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

170

Amino Acids

19.19

Weight (kDa)

5.73

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	116
AciI	CCGC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	374, 438
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	1 cut(s)	482
AgsI	TTSAA	3 cut(s)	320, 431, 440
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	3 cut(s)	62, 237, 358
AluI	AGCT	3 cut(s)	62, 237, 358
AoxI	GGCC	1 cut(s)	455
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	2 cut(s)	63, 435
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	360
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	375
BglII	AGATCT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	18
BsnI	GGCC	1 cut(s)	457
Bsp143I	GATC	4 cut(s)	76, 178, 460, 470
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	4 cut(s)	76, 178, 460, 470
BssNI	GRCGYC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	414, 426
BstACI	GRCGYC	1 cut(s)	106
BstBAI	YACGTR	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	498, 502
BstDEI	CTNAG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	4 cut(s)	79, 181, 463, 473
BstMBI	GATC	4 cut(s)	76, 178, 460, 470
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 355
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	480
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	457
BtsIMutI	CAGTG	3 cut(s)	42, 57, 67
Cac8I	GCNNGC	2 cut(s)	498, 502
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	2 cut(s)	26, 157
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	4 cut(s)	78, 180, 462, 472
DpnII	GATC	4 cut(s)	76, 178, 460, 470
Eam1104I	CTCTTC	2 cut(s)	414, 426
EarI	CTCTTC	2 cut(s)	414, 426
EciI	GGCGGA	1 cut(s)	71
Eco105I	TACGTA	1 cut(s)	480
Eco57I	CTGAAG	2 cut(s)	374, 438
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	29, 160
FaiI	YATR	9 cut(s)	27, 158, 217, 222, 244, 255, 311, 327, 494
FatI	CATG	2 cut(s)	25, 156
FspI	TGCGCA	1 cut(s)	116
GlaI	GCGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	29, 160
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	3 cut(s)	7, 40, 67
Hpy188I	TCNGA	4 cut(s)	104, 354, 363, 418
Hpy188III	TCNNGA	2 cut(s)	26, 296
Hpy8I	GTNNAC	3 cut(s)	7, 40, 67
HpyAV	CCTTC	2 cut(s)	119, 293
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	137, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 355
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	29, 160
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	76, 178, 460, 470
LpnPI	CCDG	8 cut(s)	31, 55, 108, 135, 329, 449, 471, 486
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	5 cut(s)	46, 194, 210, 379, 475
MalI	GATC	4 cut(s)	78, 180, 462, 472
MboI	GATC	4 cut(s)	76, 178, 460, 470
MboII	GAAGA	4 cut(s)	71, 360, 431, 443
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	2 cut(s)	31, 132
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	6 cut(s)	93, 119, 241, 357, 382, 415
MroXI	GAANNNNTTC	2 cut(s)	63, 435
MseI	TTAA	2 cut(s)	11, 185
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	114, 355
NdeII	GATC	4 cut(s)	76, 178, 460, 470
NlaIII	CATG	2 cut(s)	29, 160
NmuCI	GTSAC	1 cut(s)	379
NsbI	TGCGCA	1 cut(s)	116
PagI	TCATGA	1 cut(s)	25
PdmI	GAANNNNTTC	2 cut(s)	63, 435
PfeI	GAWTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	11, 185
Sau3AI	GATC	4 cut(s)	76, 178, 460, 470
Sau96I	GGNCC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	7 cut(s)	64, 239, 295, 360, 368, 426, 482
SfcI	CTRYAG	1 cut(s)	375
SnaBI	TACGTA	1 cut(s)	480
Sse9I	AATT	2 cut(s)	31, 132
SsiI	CCGC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	482
TasI	AATT	2 cut(s)	31, 132
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	2 cut(s)	11, 185
Tru9I	TTAA	2 cut(s)	11, 185
TscAI	CASTG	3 cut(s)	42, 57, 74
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	42, 203, 327
TspRI	CASTG	3 cut(s)	42, 57, 74
XapI	RAATTY	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	63, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.