Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

47180059 .. 47181571

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G580100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCAGGTTTGTTTGACAAGCAAGCAGATGTGTACTTGGATGCAAGGCCAACTTATCCCAAGGAATGGTATTCCAAATTAGCAGTTCTCACCCCTCACCACACTCTCGCTTGGGATGTTGGAACGGGCAATGGCCAAGCCGCTCTCAGTGTTGCTGAGCACTATGAACAAGTAATTGGAACCGATGTGAGTGAATCCCAGCTGCAGCGTGCAATGCTGCATCCTCGGGTTCGATATGCCCACACGCCGTTAAGCATCACCGATGATGAAGTAATAGCCTTGGTAGGGGGTGAAGATTCGGTTGACTTGGTGACTGTAGCTCAAGCTGTGCACTGGTTTGACCTACCGAAGTTTTACAATCTTGTTTCACGTGTTTTGAAGAATCCAGGAGGTGTATTTGCTGTTTGGTGCTACAATGACATTGAAGTTGATCCAACATTTGATCCTATAATGAAGCGATTTCATGACACAACACTTCCCTTTTGGGACAAGAACATCCAGTATGTGTTTGATGGCTATAAGACACTTCCATTTCCCTTTGAAAGTGTCGGTTTGGGATCGGAGGGGAACCCATTGCCACTGGACATTCCAAAGCAGCTGTCATTTGAAGGGTTTTTGAAGATGCTGAGGTCATGGTCTGCAGTCACTACAGCCAAGGACCAAGGTGTAGATTTGTTACCTGAAAAGGTGGTTAAAGAGTTTGAAGGTGCTTGGGGTGGTTCCAAATTGGTAAGGTCAGTCAGCTACAAGGCTTTTATGCTTGCTGGAAAAGTTAGGCTGCGAAGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

264

Amino Acids

29.48

Weight (kDa)

5.65

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	425, 437, 565
AcoI	YGGCCR	1 cut(s)	133
AcvI	CACGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	66, 285
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	6 cut(s)	379, 425, 542, 608, 619, 704
AjnI	CCWGG	1 cut(s)	385
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	5 cut(s)	202, 320, 326, 598, 744
AluI	AGCT	5 cut(s)	202, 320, 326, 598, 744
Alw21I	GWGCWC	2 cut(s)	162, 333
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	425, 437, 565
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	2 cut(s)	47, 133
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	5 cut(s)	202, 205, 217, 595, 778
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	5 cut(s)	82, 89, 250, 302, 322
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	658
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	135
BbrPI	CACGTG	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	162, 333
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	5 cut(s)	189, 204, 217, 607, 765
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	387
BfmI	CTRYAG	4 cut(s)	203, 315, 639, 648
BisI	GCNGC	6 cut(s)	141, 203, 206, 218, 596, 779
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	6 cut(s)	142, 204, 207, 219, 597, 780
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	658
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	3 cut(s)	181, 569, 721
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	4 cut(s)	31, 229, 264, 612
Bpu10I	CCTNAGC	1 cut(s)	626
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	5 cut(s)	60, 224, 279, 654, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 285
Bse1I	ACTGG	3 cut(s)	338, 499, 585
Bse3DI	GCAATG	3 cut(s)	136, 219, 572
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	5 cut(s)	60, 224, 279, 654, 661
BseGI	GGATG	4 cut(s)	46, 121, 220, 495
BseLI	CCNNNNNNNGG	2 cut(s)	66, 285
BseMI	GCAATG	3 cut(s)	136, 219, 572
BseMII	CTCAG	3 cut(s)	147, 160, 617
BseNI	ACTGG	3 cut(s)	338, 499, 585
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	5 cut(s)	189, 204, 217, 607, 765
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	2 cut(s)	49, 135
BsiHKAI	GWGCWC	2 cut(s)	162, 333
BsiHKCI	CYCGRG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	66, 285
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	49, 135
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	162, 333
Bsp143I	GATC	3 cut(s)	430, 442, 557
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	49, 135
BspCNI	CTCAG	3 cut(s)	148, 159, 618
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	181, 569, 721
BspMAI	CTGCAG	2 cut(s)	207, 643
BspPI	GGATC	3 cut(s)	425, 437, 565
BsrBI	CCGCTC	1 cut(s)	143
BsrDI	GCAATG	3 cut(s)	136, 219, 572
BsrI	ACTGG	3 cut(s)	338, 499, 585
BssECI	CCNNGG	5 cut(s)	60, 224, 279, 654, 661
BssMI	GATC	3 cut(s)	430, 442, 557
BssT1I	CCWWGG	4 cut(s)	60, 279, 654, 661
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	24, 210, 762
BstDEI	CTNAG	3 cut(s)	146, 156, 626
BstF5I	GGATG	4 cut(s)	46, 121, 220, 495
BstKTI	GATC	3 cut(s)	433, 445, 560
BstMBI	GATC	3 cut(s)	430, 442, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	4 cut(s)	203, 315, 639, 648
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	5 cut(s)	189, 204, 217, 607, 765
BsuRI	GGCC	2 cut(s)	49, 135
BtsCI	GGATG	4 cut(s)	46, 121, 220, 495
BtsIMutI	CAGTG	3 cut(s)	154, 331, 578
Cac8I	GCNNGC	3 cut(s)	24, 210, 762
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	464, 633
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	146, 156, 626
DpnI	GATC	3 cut(s)	432, 444, 559
DpnII	GATC	3 cut(s)	430, 442, 557
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	4 cut(s)	60, 279, 654, 661
Eco47I	GGWCC	1 cut(s)	658
Eco72I	CACGTG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	4 cut(s)	60, 279, 654, 661
ErhI	CCWWGG	4 cut(s)	60, 279, 654, 661
FaeI	CATG	2 cut(s)	467, 636
FaiI	YATR	8 cut(s)	165, 237, 449, 465, 504, 519, 634, 758
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	2 cut(s)	463, 632
Fnu4HI	GCNGC	6 cut(s)	141, 203, 206, 218, 596, 779
FokI	GGATG	4 cut(s)	53, 128, 207, 482
Fsp4HI	GCNGC	6 cut(s)	141, 203, 206, 218, 596, 779
GluI	GCNGC	6 cut(s)	141, 203, 206, 218, 596, 779
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	49, 135
Hin1II	CATG	2 cut(s)	467, 636
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	194, 296, 382
HphI	GGTGA	5 cut(s)	82, 89, 250, 302, 322
Hpy166II	GTNNAC	3 cut(s)	34, 304, 331
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	3 cut(s)	34, 304, 331
HpyAV	CCTTC	2 cut(s)	602, 698
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	6 cut(s)	44, 205, 212, 220, 331, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	3 cut(s)	146, 156, 626
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	467, 636
Kzo9I	GATC	3 cut(s)	430, 442, 557
LpnPI	CCDG	8 cut(s)	212, 319, 372, 399, 512, 566, 693, 750
Lsp1109I	GCAGC	5 cut(s)	189, 204, 217, 607, 765
LweI	GCATC	4 cut(s)	31, 229, 264, 612
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	3 cut(s)	310, 643, 675
MalI	GATC	3 cut(s)	432, 444, 559
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	3 cut(s)	430, 442, 557
MboII	GAAGA	3 cut(s)	305, 391, 631
MhlI	GDGCHC	2 cut(s)	162, 333
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	77, 174, 725
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	100, 458
MnlI	CCTC	5 cut(s)	105, 234, 383, 556, 621
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	251, 693
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	202, 598
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	3 cut(s)	430, 442, 557
NlaIII	CATG	2 cut(s)	467, 636
NlaIV	GGNNCC	3 cut(s)	181, 569, 721
NmuCI	GTSAC	2 cut(s)	310, 643
PagI	TCATGA	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	194, 296, 382
PflMI	CCANNNNNTGG	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	6 cut(s)	142, 204, 207, 219, 597, 780
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
Ppu21I	YACGTR	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	3 cut(s)	181, 569, 721
PspPI	GGNCC	1 cut(s)	658
PstI	CTGCAG	2 cut(s)	207, 643
PvuII	CAGCTG	2 cut(s)	202, 598
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	251, 693
SatI	GCNGC	6 cut(s)	141, 203, 206, 218, 596, 779
Sau3AI	GATC	3 cut(s)	430, 442, 557
Sau96I	GGNCC	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	162, 333
SfaNI	GCATC	4 cut(s)	31, 229, 264, 612
SfcI	CTRYAG	4 cut(s)	203, 315, 639, 648
SinI	GGWCC	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	77, 174, 725
SsiI	CCGC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	4 cut(s)	60, 279, 654, 661
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	232
TasI	AATT	3 cut(s)	77, 174, 725
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	194, 296, 382
Tru1I	TTAA	2 cut(s)	251, 693
Tru9I	TTAA	2 cut(s)	251, 693
TscAI	CASTG	3 cut(s)	154, 338, 585
TseFI	GTSAC	2 cut(s)	310, 643
TseI	GCWGC	5 cut(s)	202, 205, 217, 595, 778
Tsp45I	GTSAC	2 cut(s)	310, 643
TspDTI	ATGAA	4 cut(s)	180, 282, 452, 467
TspRI	CASTG	3 cut(s)	154, 338, 585
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.