Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

11002384 .. 11002904

Gene Structure 521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTTAACTTAATAGGGGGCGGTCATGAAAATTCAGTTGATTTGGTTAGAGTGGCTTCTGCCGTTCACTGGTTTGATCTGCCACACTTCTACTCGCTTGTCAAACGCCTTCTGCGTAAACCAGGAGGCATAATTGCTGTTTGGTGCTACAACAGCATGGACTGCCCGGTCGTAGGCCCTGACTTTGATCTTGCAATGAAGCGTTTACACGAAAATTGTCTACCATTTTGGGACCCGAGGGCAAAGTACGCATTTGAGGGTTATAGGACACTTCCTTTTCCATTTGAGAGCGTTGGATTGGGTCGTGAAGTCACTACGGCTAAAGACCAGGGTGTGGATTTGTTGTCTGAAGATGTGATTAAAGAGCTTGAAAGAGCTTGGGGTGGGCATGATCTGATTAGATCAGTTACAATCAAGGCATTTATGCTTGTGGGCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

148

Amino Acids

16.57

Weight (kDa)

6.5

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	442
AasI	GACNNNNNNGTC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	69, 173, 334
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	121, 327
AluBI	AGCT	2 cut(s)	367, 377
AluI	AGCT	2 cut(s)	367, 377
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	176, 232
AsuC2I	CCSGG	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	47, 333
BciT130I	CCWGG	2 cut(s)	123, 329
BcnI	CCSGG	1 cut(s)	167
Bme1390I	CCNGG	3 cut(s)	123, 167, 329
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	176, 232
BmiI	GGNNCC	2 cut(s)	233, 234
BmrFI	CCNGG	3 cut(s)	123, 167, 329
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	236, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 173, 334
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	123, 329
BseDI	CCNNGG	2 cut(s)	236, 328
BseLI	CCNNNNNNNGG	3 cut(s)	69, 173, 334
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	69, 173, 334
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	76, 187, 391, 401
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	233, 234
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	236, 328
BssMI	GATC	4 cut(s)	76, 187, 391, 401
Bst2UI	CCWGG	2 cut(s)	123, 329
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstKTI	GATC	4 cut(s)	79, 190, 394, 404
BstMBI	GATC	4 cut(s)	76, 187, 391, 401
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 162, 248
BstNI	CCWGG	2 cut(s)	123, 329
BstSCI	CCNGG	3 cut(s)	121, 165, 327
BsuRI	GGCC	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	176, 232
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	26, 157, 389
CviJI	RGCY	5 cut(s)	56, 177, 320, 367, 377
CviKI_1	RGCY	5 cut(s)	56, 177, 320, 367, 377
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	4 cut(s)	78, 189, 393, 403
DpnII	GATC	4 cut(s)	76, 187, 391, 401
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	235
EcoO109I	RGGNCCY	2 cut(s)	176, 232
EcoRII	CCWGG	2 cut(s)	121, 327
FaeI	CATG	3 cut(s)	29, 160, 392
FaiI	YATR	7 cut(s)	27, 131, 158, 264, 390, 425, 442
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	25, 156, 388
FblI	GTMKAC	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	3 cut(s)	29, 160, 392
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	5 cut(s)	7, 67, 119, 206, 221
Hpy188I	TCNGA	2 cut(s)	349, 396
Hpy188III	TCNNGA	2 cut(s)	26, 305
Hpy8I	GTNNAC	5 cut(s)	7, 67, 119, 206, 221
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 162, 248
Hsp92II	CATG	3 cut(s)	29, 160, 392
KflI	GGGWCCC	1 cut(s)	232
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	76, 187, 391, 401
LpnPI	CCDG	7 cut(s)	55, 108, 135, 180, 192, 314, 341
MaeIII	GTNAC	2 cut(s)	310, 406
MalI	GATC	4 cut(s)	78, 189, 393, 403
MboI	GATC	4 cut(s)	76, 187, 391, 401
MboII	GAAGA	1 cut(s)	362
MluCI	AATT	4 cut(s)	31, 132, 214, 437
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	119, 231, 250
MseI	TTAA	3 cut(s)	6, 11, 360
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	3 cut(s)	123, 167, 329
MvaI	CCWGG	2 cut(s)	123, 329
MwoI	GCNNNNNNNGC	3 cut(s)	153, 162, 248
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	4 cut(s)	76, 187, 391, 401
NlaIII	CATG	3 cut(s)	29, 160, 392
NlaIV	GGNNCC	2 cut(s)	233, 234
NmuCI	GTSAC	1 cut(s)	310
PagI	TCATGA	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	121, 327
PspGI	CCWGG	2 cut(s)	121, 327
PspN4I	GGNNCC	2 cut(s)	233, 234
PspPI	GGNCC	2 cut(s)	176, 232
PspPPI	RGGWCCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	3 cut(s)	6, 11, 360
Sau3AI	GATC	4 cut(s)	76, 187, 391, 401
Sau96I	GGNCC	2 cut(s)	176, 232
ScrFI	CCNGG	3 cut(s)	123, 167, 329
SetI	ASST	2 cut(s)	369, 379
SinI	GGWCC	1 cut(s)	232
Sse9I	AATT	4 cut(s)	31, 132, 214, 437
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	121, 165, 327
TasI	AATT	4 cut(s)	31, 132, 214, 437
Tru1I	TTAA	3 cut(s)	6, 11, 360
Tru9I	TTAA	3 cut(s)	6, 11, 360
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	42, 212
TspRI	CASTG	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.