Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

56115349 .. 56116264

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTGGCTGCTCTCACCCCACAACACTCTTTAGCTTGGGATGTTGGCACTGGCAATGGCCAAGCTACCGTTGGTCTTTTAGAGCATTACGACCAAGTAGTTGCAAGTGACATAAGTGAAGCACAATTGAAATATGCCATCCAACATCCTCGAGTTCGATACATTCACACTCCAGCATCAATCTCAGACGATGAAATGGTAAACTTAATAGGGGGCGGTCACGAAAATTCAGTTGATTTGGTTACAGTGGCTGCTGCCATTCACTGGTTTGATCTCCCACGCTTCTACTCGCTTGTCAAACGCCTTCTGCGACAACCAGGAGGCATAATCGCTGTTTGGTGCTACAATGGCATGGTCGTAAGCCCCGACTTTGATCTTGTAATGAAGCGTTTACACGAAAGTTGTCTACCATTTTGGGACCCGATGACACAGTACGCATGGGGGGGTTATACGACACTTCCTTTTCCATTTGAGAGCGTTGGATTGGGTCGTGAAGGTGAACCTATCACACTTGAAATACCAAAGGAATTGTCATTTCAGGGGTTTGAAAGGATGTTGAGGTCTTTCTCTGCAGTCGCTACAGCTAAAGACCGGGGTGTGGATTTGTTGTCTGAAGATGTGATTAAAGAGCTTCACAGAGCCTGGGGTGCGCATGACCTGGTTAGATCAGTTACATACAAGGCATTTATGCTTGTGGGCAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

235

Amino Acids

26.26

Weight (kDa)

5.68

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	14 - 110	1.4e-09	Methyltransferase domain
Methyltransf_25	PF13649	14 - 107	2.3e-08	Methyltransferase domain
Methyltransf_12	PF08242	14 - 108	7.8e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	706
Acc16I	TGCGCA	1 cut(s)	651
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	406
AciI	CCGC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	264, 598
AgsI	TTSAA	3 cut(s)	130, 515, 548
AjnI	CCWGG	3 cut(s)	316, 641, 657
AluBI	AGCT	4 cut(s)	35, 65, 584, 631
AluI	AGCT	4 cut(s)	35, 65, 584, 631
AlwNI	CAGNNNCTG	2 cut(s)	251, 642
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	8, 251, 254
ApoI	RAATTY	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	7, 509
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	238, 241
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	3 cut(s)	318, 643, 659
BcnI	CCSGG	1 cut(s)	593
BfmI	CTRYAG	2 cut(s)	570, 579
BisI	GCNGC	3 cut(s)	9, 252, 255
BlsI	GCNGC	3 cut(s)	10, 253, 256
Bme1390I	CCNGG	4 cut(s)	318, 593, 643, 659
Bme18I	GGWCC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	419, 420
BmrFI	CCNGG	4 cut(s)	318, 593, 643, 659
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	592, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 598
Bse1I	ACTGG	2 cut(s)	55, 269
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	3 cut(s)	318, 643, 659
BseDI	CCNNGG	2 cut(s)	592, 642
BseGI	GGATG	4 cut(s)	46, 138, 145, 558
BseLI	CCNNNNNNNGG	2 cut(s)	264, 598
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	55, 269
BseXI	GCAGC	2 cut(s)	238, 241
BshFI	GGCC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	264, 598
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	271, 373, 665
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	419, 420
BspMAI	CTGCAG	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	55, 269
BssECI	CCNNGG	2 cut(s)	592, 642
BssMI	GATC	3 cut(s)	271, 373, 665
Bst2UI	CCWGG	3 cut(s)	318, 643, 659
Bst4CI	ACNGT	3 cut(s)	70, 247, 432
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	4 cut(s)	46, 138, 145, 558
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	3 cut(s)	274, 376, 668
BstMBI	GATC	3 cut(s)	271, 373, 665
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 647
BstNI	CCWGG	3 cut(s)	318, 643, 659
BstSCI	CCNGG	4 cut(s)	316, 591, 641, 657
BstSFI	CTRYAG	2 cut(s)	570, 579
BstV1I	GCAGC	2 cut(s)	238, 241
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	46, 138, 145, 558
BtsIMutI	CAGTG	3 cut(s)	48, 252, 262
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	2 cut(s)	251, 642
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	352, 438, 653
CviJI	RGCY	9 cut(s)	8, 35, 60, 65, 251, 363, 584, 631, 641
CviKI_1	RGCY	9 cut(s)	8, 35, 60, 65, 251, 363, 584, 631, 641
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	3 cut(s)	273, 375, 667
DpnII	GATC	3 cut(s)	271, 373, 665
EaeI	YGGCCR	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	316, 641, 657
FaeI	CATG	3 cut(s)	355, 441, 656
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	3 cut(s)	351, 437, 652
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	9, 252, 255
FokI	GGATG	4 cut(s)	53, 125, 132, 565
Fsp4HI	GCNGC	3 cut(s)	9, 252, 255
FspAI	RTGCGCAY	1 cut(s)	651
FspI	TGCGCA	1 cut(s)	651
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	3 cut(s)	9, 252, 255
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	592
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	3 cut(s)	355, 441, 656
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	2 cut(s)	7, 509
Hpy166II	GTNNAC	4 cut(s)	202, 392, 407, 500
Hpy188I	TCNGA	2 cut(s)	187, 613
Hpy188III	TCNNGA	2 cut(s)	221, 491
Hpy8I	GTNNAC	4 cut(s)	202, 392, 407, 500
HpyAV	CCTTC	2 cut(s)	314, 488
HpyCH4III	ACNGT	3 cut(s)	70, 247, 432
HpyCH4V	TGCA	2 cut(s)	104, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 647
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	355, 441, 656
HspAI	GCGC	1 cut(s)	650
KflI	GGGWCCC	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	271, 373, 665
Lsp1109I	GCAGC	2 cut(s)	238, 241
LweI	GCATC	1 cut(s)	185
MabI	ACCWGGT	1 cut(s)	657
MaeIII	GTNAC	4 cut(s)	107, 218, 241, 670
MalI	GATC	3 cut(s)	273, 375, 667
MboI	GATC	3 cut(s)	271, 373, 665
MboII	GAAGA	1 cut(s)	626
MfeI	CAATTG	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	3 cut(s)	125, 226, 527
MluNI	TGGCCA	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	166, 460
MnlI	CCTC	3 cut(s)	159, 314, 552
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	2 cut(s)	206, 624
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	4 cut(s)	318, 593, 643, 659
MunI	CAATTG	1 cut(s)	125
MvaI	CCWGG	3 cut(s)	318, 643, 659
MwoI	GCNNNNNNNGC	2 cut(s)	348, 647
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	3 cut(s)	271, 373, 665
NlaIII	CATG	3 cut(s)	355, 441, 656
NlaIV	GGNNCC	2 cut(s)	419, 420
NmuCI	GTSAC	2 cut(s)	107, 218
NsbI	TGCGCA	1 cut(s)	651
PaeR7I	CTCGAG	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	307, 363
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	10, 253, 256
PpuMI	RGGWCCY	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	706
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	3 cut(s)	316, 641, 657
PspGI	CCWGG	3 cut(s)	316, 641, 657
PspN4I	GGNNCC	2 cut(s)	419, 420
PspPI	GGNCC	1 cut(s)	418
PspPPI	RGGWCCY	1 cut(s)	418
PspXI	VCTCGAGB	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	2 cut(s)	251, 642
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	206, 624
SatI	GCNGC	3 cut(s)	9, 252, 255
Sau3AI	GATC	3 cut(s)	271, 373, 665
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	4 cut(s)	318, 593, 643, 659
SetI	ASST	8 cut(s)	37, 67, 499, 505, 563, 586, 633, 660
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	2 cut(s)	570, 579
Sfr274I	CTCGAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	418
SlaI	CTCGAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	125, 226, 527
SsiI	CCGC	1 cut(s)	216
StyD4I	CCNGG	4 cut(s)	316, 591, 641, 657
TaaI	ACNGT	3 cut(s)	70, 247, 432
TaqI	TCGA	2 cut(s)	151, 157
TasI	AATT	3 cut(s)	125, 226, 527
Tru1I	TTAA	2 cut(s)	206, 624
Tru9I	TTAA	2 cut(s)	206, 624
TscAI	CASTG	3 cut(s)	55, 252, 269
TseFI	GTSAC	2 cut(s)	107, 218
TseI	GCWGC	3 cut(s)	8, 251, 254
Tsp45I	GTSAC	2 cut(s)	107, 218
TspDTI	ATGAA	2 cut(s)	207, 398
TspRI	CASTG	3 cut(s)	55, 252, 269
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.