Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

56290 .. 57276

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggcaggtctatttgacaagcaggcagagacatacgtggaagctcggccaacgtatcccaaggaatggtattcaaagctggctgctctcaccccacaacactccttagcttgggatgttggcacgggcaatggccaagctaccgtcggtcttttagagcattacgaccaagtagttggaagtgatataagtgaagcacaattgaaccgtgccatccagcaccctcgagttcgatacattcacactccaacatcaatcttagacgatgaaatggttaacttaatagggggcggtcatgaaaattcagttgatttgattacagtggctactgccgttcactggtttgatctgccgcacttctactcgcttgtcaaacgccttctgcgtaaaccaggaggcataattgctgtttggtgctacaacagcatggacggcacggtcgtaggccctgactttgatcttgcaatgaagcgttttcacgaaaattgtctaccattttgggacccgagggcaaagtacgcatttgagggttataggacacttccttttccatttgagagcgttggattgggtcgtgaaggtgaacctatcacacttgaaataccaagggaattgtcatttcagggggttgagaggatgttgaggtcttactctgcagtcactacggctaaagaccagggtgtggatttgttgtctgaagatgtgattaaagagcttcaaagatcttggggtgggcatgatctgattagatcagttacaatcaaggcatttatgcttgtgggcaaattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

263

Amino Acids

29.57

Weight (kDa)

5.72

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	790
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB7I	CCANNNNNTGG	2 cut(s)	66, 682
AccI	GTMKAC	1 cut(s)	490
AciI	CCGC	2 cut(s)	291, 353
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	4 cut(s)	66, 111, 339, 682
AgsI	TTSAA	4 cut(s)	75, 205, 599, 719
AjnI	CCWGG	2 cut(s)	391, 675
AluBI	AGCT	5 cut(s)	44, 79, 110, 140, 715
AluI	AGCT	5 cut(s)	44, 79, 110, 140, 715
Alw26I	GTCTC	1 cut(s)	23
Ama87I	CYCGRG	2 cut(s)	225, 505
AoxI	GGCC	3 cut(s)	47, 133, 445
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	446, 502
AsuHPI	GGTGA	2 cut(s)	82, 593
AvaI	CYCGRG	2 cut(s)	225, 505
AvaII	GGWCC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	3 cut(s)	317, 448, 681
BciT130I	CCWGG	2 cut(s)	393, 677
BciVI	GTATCC	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	2 cut(s)	84, 353
BlsI	GCNGC	2 cut(s)	85, 354
Bme1390I	CCNGG	2 cut(s)	393, 677
Bme18I	GGWCC	1 cut(s)	502
BmeT110I	CYCGRG	2 cut(s)	225, 505
BmgT120I	GGNCC	2 cut(s)	446, 502
BmiI	GGNNCC	2 cut(s)	503, 504
BmrFI	CCNGG	2 cut(s)	393, 677
Bpu10I	CCTNAGC	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	60, 506, 605, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 111, 339, 682
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	2 cut(s)	136, 471
BseBI	CCWGG	2 cut(s)	393, 677
BseDI	CCNNGG	4 cut(s)	60, 506, 605, 676
BseGI	GGATG	3 cut(s)	121, 213, 642
BseLI	CCNNNNNNNGG	4 cut(s)	66, 111, 339, 682
BseMI	GCAATG	2 cut(s)	136, 471
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	3 cut(s)	49, 135, 447
BsiEI	CGRYCG	1 cut(s)	441
BsiHKCI	CYCGRG	2 cut(s)	225, 505
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	4 cut(s)	66, 111, 339, 682
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	49, 135, 447
BsoBI	CYCGRG	2 cut(s)	225, 505
Bsp143I	GATC	5 cut(s)	346, 457, 722, 739, 749
BspACI	CCGC	2 cut(s)	291, 353
BspANI	GGCC	3 cut(s)	49, 135, 447
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	503, 504
BspMAI	CTGCAG	1 cut(s)	658
BsrDI	GCAATG	2 cut(s)	136, 471
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	4 cut(s)	60, 506, 605, 676
BssMI	GATC	5 cut(s)	346, 457, 722, 739, 749
BssT1I	CCWWGG	2 cut(s)	60, 605
Bst2UI	CCWGG	2 cut(s)	393, 677
Bst4CI	ACNGT	4 cut(s)	145, 209, 322, 439
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	24, 81
BstDEI	CTNAG	2 cut(s)	106, 259
BstF5I	GGATG	3 cut(s)	121, 213, 642
BstKTI	GATC	5 cut(s)	349, 460, 725, 742, 752
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	5 cut(s)	346, 457, 722, 739, 749
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	3 cut(s)	423, 432, 518
BstNI	CCWGG	2 cut(s)	393, 677
BstSCI	CCNGG	2 cut(s)	391, 675
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	722
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	722
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	49, 135, 447
BtsCI	GGATG	3 cut(s)	121, 213, 642
BtsIMutI	CAGTG	2 cut(s)	327, 337
Cac8I	GCNNGC	2 cut(s)	24, 81
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	446, 502
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	3 cut(s)	296, 427, 737
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	106, 259
DpnI	GATC	5 cut(s)	348, 459, 724, 741, 751
DpnII	GATC	5 cut(s)	346, 457, 722, 739, 749
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	2 cut(s)	47, 133
Eco130I	CCWWGG	2 cut(s)	60, 605
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	2 cut(s)	225, 505
EcoO109I	RGGNCCY	2 cut(s)	446, 502
EcoRII	CCWGG	2 cut(s)	391, 675
EcoT14I	CCWWGG	2 cut(s)	60, 605
ErhI	CCWWGG	2 cut(s)	60, 605
FaeI	CATG	3 cut(s)	299, 430, 740
FaiI	YATR	9 cut(s)	34, 188, 297, 401, 428, 534, 738, 773, 790
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	3 cut(s)	295, 426, 736
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	84, 353
FokI	GGATG	3 cut(s)	128, 200, 649
Fsp4HI	GCNGC	2 cut(s)	84, 353
GluI	GCNGC	2 cut(s)	84, 353
HaeIII	GGCC	3 cut(s)	49, 135, 447
Hin1II	CATG	3 cut(s)	299, 430, 740
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HpaI	GTTAAC	1 cut(s)	277
HphI	GGTGA	2 cut(s)	82, 593
Hpy166II	GTNNAC	5 cut(s)	277, 337, 389, 491, 584
Hpy188I	TCNGA	2 cut(s)	697, 744
Hpy188III	TCNNGA	3 cut(s)	296, 479, 575
Hpy8I	GTNNAC	5 cut(s)	277, 337, 389, 491, 584
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	389, 572
HpyCH4III	ACNGT	4 cut(s)	145, 209, 322, 439
HpyCH4IV	ACGT	2 cut(s)	36, 53
HpyCH4V	TGCA	2 cut(s)	464, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	423, 432, 518
HpyF3I	CTNAG	2 cut(s)	106, 259
HpySE526I	ACGT	2 cut(s)	36, 53
Hsp92II	CATG	3 cut(s)	299, 430, 740
KflI	GGGWCCC	1 cut(s)	502
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	346, 457, 722, 739, 749
Lsp1109I	GCAGC	1 cut(s)	70
MaeII	ACGT	2 cut(s)	36, 53
MaeIII	GTNAC	2 cut(s)	658, 754
MalI	GATC	5 cut(s)	348, 459, 724, 741, 751
MboI	GATC	5 cut(s)	346, 457, 722, 739, 749
MboII	GAAGA	1 cut(s)	710
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	722
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	3 cut(s)	157, 272, 544
MnlI	CCTC	6 cut(s)	234, 389, 501, 520, 627, 636
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	3 cut(s)	276, 281, 708
Msp20I	TGGCCA	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	393, 677
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	2 cut(s)	393, 677
MwoI	GCNNNNNNNGC	3 cut(s)	423, 432, 518
NdeII	GATC	5 cut(s)	346, 457, 722, 739, 749
NlaIII	CATG	3 cut(s)	299, 430, 740
NlaIV	GGNNCC	2 cut(s)	503, 504
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	225
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	2 cut(s)	382, 438
PflMI	CCANNNNNTGG	2 cut(s)	66, 682
PkrI	GCNGC	2 cut(s)	85, 354
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	790
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	391, 675
PspGI	CCWGG	2 cut(s)	391, 675
PspN4I	GGNNCC	2 cut(s)	503, 504
PspPI	GGNCC	2 cut(s)	446, 502
PspPPI	RGGWCCY	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	722
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	3 cut(s)	276, 281, 708
SatI	GCNGC	2 cut(s)	84, 353
Sau3AI	GATC	5 cut(s)	346, 457, 722, 739, 749
Sau96I	GGNCC	2 cut(s)	446, 502
ScrFI	CCNGG	2 cut(s)	393, 677
SfcI	CTRYAG	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
SsiI	CCGC	2 cut(s)	291, 353
StyD4I	CCNGG	2 cut(s)	391, 675
StyI	CCWWGG	2 cut(s)	60, 605
TaaI	ACNGT	4 cut(s)	145, 209, 322, 439
TaiI	ACGT	2 cut(s)	39, 56
TaqI	TCGA	2 cut(s)	226, 232
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
TauI	GCSGC	1 cut(s)	355
Tru1I	TTAA	3 cut(s)	276, 281, 708
Tru9I	TTAA	3 cut(s)	276, 281, 708
TscAI	CASTG	2 cut(s)	327, 344
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	3 cut(s)	282, 312, 482
TspRI	CASTG	2 cut(s)	327, 344
Van91I	CCANNNNNTGG	2 cut(s)	66, 682
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.