Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

1280827 .. 1282764

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGTCTATTCGACAAGCAGGCAGAGGTGTACCTGGAAGCTCGCCCAACATATCCTAAGGAATGGTATATGAAACTGGCTGCTCTCACCCCCAAACATTCTTTAGCCTGGGATGTTGGAACCGGCAATGGCCAAGCTGCTTGTAGTCTTTCAGAGCATTACCAGCAAGTAGTGGGAAGCGACATCAGTGAAGAACAATTGAAGCATGCCATGCAACACCCTCGAGTTCGATACATTCATACTCCAACATCAATCTCAGAGGATGAAATGATCAACTTAATAGCCGGTGGTCATGAAAATTCAGTGGACTTGATTACAGTGGCGGAAGCCATTCATTGGTTTGATCTCCCCCAATTCTATTCCCTTGTCAGACGCCTTCTGCGCAAAGCCGGAGGCGTCATCGCAGTTTGGGGCTACAACAACACGGTTGTAAGCCTCGATTTCGATCTTTTGATGAAGCCTTTACACAAAAAGATGTTACCATATTATGACCCGAAAACAAGCTACTTGTGGGAGGGTTACAGGACACTTCCATTTCCATTTGAGAGTGTTGGTTTAGGTCGTGAAGGAGAGCCTATGGAACTTGACATAAAAAGGGAGCAATCATTTCAGGGGCTTGTGAGGTTTATGAGGTCTTGCTCTGCAGTCACTACGGCTAAAGACCAGGGTGTGGATTTGTTGCCTGAAGAGGTGATTGAAGAGTTGAAACAAGTTTGGGGTGGTCCTGATCTGGTTAGATCCGTCACGGTGAAGGCTTTTACTCTTGTTGGCAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

261

Amino Acids

29.42

Weight (kDa)

5.78

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 134	6e-11	Methyltransferase domain
Methyltransf_25	PF13649	39 - 132	4.4e-10	Methyltransferase domain
Methyltransf_12	PF08242	39 - 133	1.3e-08	Methyltransferase domain
Methyltransf_31	PF13847	39 - 135	7.1e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	386
AccB7I	CCANNNNNTGG	2 cut(s)	339, 673
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	2 cut(s)	376, 399
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	339, 673
AgsI	TTSAA	3 cut(s)	205, 701, 709
AjnI	CCWGG	3 cut(s)	36, 110, 666
AluBI	AGCT	3 cut(s)	44, 140, 507
AluI	AGCT	3 cut(s)	44, 140, 507
AlwI	GGATC	1 cut(s)	735
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	83, 140
ApoI	RAATTY	1 cut(s)	301
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	725
AsuHPI	GGTGA	3 cut(s)	82, 706, 763
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	725
AxyI	CCTNAGG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	70, 127
BceAI	ACGGC	1 cut(s)	672
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	3 cut(s)	38, 112, 668
BclI	TGATCA	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	2 cut(s)	84, 141
BlsI	GCNGC	2 cut(s)	85, 142
Bme1390I	CCNGG	3 cut(s)	38, 112, 668
Bme18I	GGWCC	1 cut(s)	725
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	38, 112, 668
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	2 cut(s)	376, 399
BsaJI	CCNNGG	2 cut(s)	111, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 673
Bse118I	RCCGGY	2 cut(s)	125, 287
Bse1I	ACTGG	1 cut(s)	84
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	38, 112, 668
BseDI	CCNNGG	2 cut(s)	111, 667
BseGI	GGATG	2 cut(s)	121, 271
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	339, 673
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	70, 127
BshFI	GGCC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	126, 288, 393
BslI	CCNNNNNNNGG	2 cut(s)	339, 673
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	273, 346, 448, 730, 740
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	1 cut(s)	735
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	2 cut(s)	125, 287
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	2 cut(s)	125, 287
BssECI	CCNNGG	2 cut(s)	111, 667
BssMI	GATC	5 cut(s)	273, 346, 448, 730, 740
BssNI	GRCGYC	2 cut(s)	376, 399
Bst2UI	CCWGG	3 cut(s)	38, 112, 668
Bst4CI	ACNGT	3 cut(s)	322, 430, 751
Bst6I	CTCTTC	2 cut(s)	684, 696
BstACI	GRCGYC	2 cut(s)	376, 399
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	24, 46, 210
BstDEI	CTNAG	2 cut(s)	60, 259
BstF5I	GGATG	2 cut(s)	121, 271
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	5 cut(s)	276, 349, 451, 733, 743
BstMBI	GATC	5 cut(s)	273, 346, 448, 730, 740
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 214, 384
BstNI	CCWGG	3 cut(s)	38, 112, 668
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	3 cut(s)	36, 110, 666
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	70, 127
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	121, 271
BtsIMutI	CAGTG	3 cut(s)	196, 312, 327
Cac8I	GCNNGC	3 cut(s)	24, 46, 210
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	2 cut(s)	125, 287
Cfr13I	GGNCC	1 cut(s)	725
CseI	GACGC	2 cut(s)	384, 388
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	209, 214, 296
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	60, 259
DpnI	GATC	5 cut(s)	275, 348, 450, 732, 742
DpnII	GATC	5 cut(s)	273, 346, 448, 730, 740
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	684, 696
EarI	CTCTTC	2 cut(s)	684, 696
EciI	GGCGGA	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	708
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	36, 110, 666
FaeI	CATG	3 cut(s)	212, 217, 299
FatI	CATG	3 cut(s)	208, 213, 295
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	84, 141
FokI	GGATG	2 cut(s)	128, 278
Fsp4HI	GCNGC	2 cut(s)	84, 141
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	2 cut(s)	84, 141
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	3 cut(s)	126, 288, 393
HgaI	GACGC	2 cut(s)	384, 388
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	2 cut(s)	376, 399
Hin1II	CATG	3 cut(s)	212, 217, 299
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HpaII	CCGG	3 cut(s)	126, 288, 393
HphI	GGTGA	3 cut(s)	82, 706, 763
Hpy166II	GTNNAC	2 cut(s)	34, 310
Hpy188I	TCNGA	3 cut(s)	157, 262, 374
Hpy188III	TCNNGA	3 cut(s)	296, 566, 728
Hpy8I	GTNNAC	2 cut(s)	34, 310
HpyAV	CCTTC	3 cut(s)	389, 563, 748
HpyCH4III	ACNGT	3 cut(s)	322, 430, 751
HpyCH4V	TGCA	2 cut(s)	217, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 214, 384
HpyF3I	CTNAG	2 cut(s)	60, 259
Hsp92I	GRCGYC	2 cut(s)	376, 399
Hsp92II	CATG	3 cut(s)	212, 217, 299
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	273, 346, 448, 730, 740
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	70, 127
MaeIII	GTNAC	4 cut(s)	480, 521, 649, 745
MalI	GATC	5 cut(s)	275, 348, 450, 732, 742
MboI	GATC	5 cut(s)	273, 346, 448, 730, 740
MboII	GAAGA	3 cut(s)	206, 701, 713
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	200, 301, 356
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	100, 272
MnlI	CCTC	9 cut(s)	22, 234, 256, 389, 449, 511, 618, 627, 685
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	3 cut(s)	126, 288, 393
MspR9I	CCNGG	3 cut(s)	38, 112, 668
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	3 cut(s)	38, 112, 668
MwoI	GCNNNNNNNGC	3 cut(s)	166, 214, 384
NdeII	GATC	5 cut(s)	273, 346, 448, 730, 740
NlaIII	CATG	3 cut(s)	212, 217, 299
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	649, 745
NsbI	TGCGCA	1 cut(s)	386
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	225
PagI	TCATGA	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	333
PflMI	CCANNNNNTGG	2 cut(s)	339, 673
PkrI	GCNGC	2 cut(s)	85, 142
Psp6I	CCWGG	3 cut(s)	36, 110, 666
PspGI	CCWGG	3 cut(s)	36, 110, 666
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	725
PspXI	VCTCGAGB	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	740
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	84, 141
Sau3AI	GATC	5 cut(s)	273, 346, 448, 730, 740
Sau96I	GGNCC	1 cut(s)	725
ScrFI	CCNGG	3 cut(s)	38, 112, 668
SfcI	CTRYAG	1 cut(s)	645
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	725
SlaI	CTCGAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	3 cut(s)	200, 301, 356
SsiI	CCGC	1 cut(s)	326
StyD4I	CCNGG	3 cut(s)	36, 110, 666
TaaI	ACNGT	3 cut(s)	322, 430, 751
TaqI	TCGA	5 cut(s)	15, 226, 232, 441, 447
TasI	AATT	3 cut(s)	200, 301, 356
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	3 cut(s)	196, 312, 327
TseFI	GTSAC	2 cut(s)	649, 745
TseI	GCWGC	2 cut(s)	83, 140
Tsp45I	GTSAC	2 cut(s)	649, 745
TspDTI	ATGAA	6 cut(s)	89, 230, 282, 312, 326, 473
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	196, 312, 327
Van91I	CCANNNNNTGG	2 cut(s)	339, 673
VpaK11BI	GGWCC	1 cut(s)	725
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.