Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

30817411 .. 30818461

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1242500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAGGTATATTCGACAAGCACGCAGAGGTTTACTTGGTAGGAAGGCCAACTTATCCCAAGGAATGGTTTTCCATGCTGGCTACTCTCTCACCAAATCATTCTTTAGCTTGGGATGTCGGCACTGGCAATGGCCAAGCTGCTTTTTCTCTTGGAGAGCATTATGAGCAAGTAATAGGGACTGATATGAGTGAGTCCCAACTGAAGCTTGCACTCCAACATCCTCGAGTTCGTTACGTTCACACTCCGATGGCCATGTCTGAAGACGATTTGGTTGAGTTAATAGGGGGAGAAAACTCAGTTGATTTGGTGACCGCGGCAGAGGCCGTGCACTGGTTCGACCTCCCAAAGTTCTACTCGGTCGTCAAGCGCGTTTTGCGTAAGCCAGGAGGCGTAATTGCAGTTTGGGGCTACAACGATAGCGTAACAGACCCCGAACTTGACGATGTATTGAAGCGTTTTCGCGAAGCATGTAAACCGTTTTGGGACCCGAAGATGGACTACTTGTGGGAAGGGTATAGGACACTTCCATTTCCATTTGAGAGCGTTGGTTTGGGTTCTGAAGGTCGGCCTGCGCCACTGGAAATGCCAAAGGAGACGTCATTTGAAGGGGTGGTGAGGATGTTAAGGTCCTACTCTGGAGTCAATGCAGCTAAAGATCAAGGTGTGGATTTGTTATCACAAGAGGTGATTGAAGAGCTTCAAAGAGTTTGGGGTGGCCCTAACTTGGTCAGAAAAGTTACTACCAAGGCATTTATGCTTGCCGGAAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

259

Amino Acids

28.95

Weight (kDa)

5.23

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 134	1.2e-12	Methyltransferase domain
Methyltransf_25	PF13649	39 - 130	8.6e-11	Methyltransferase domain
Methyltransf_12	PF08242	39 - 132	4.8e-09	Methyltransferase domain
Methyltransf_31	PF13847	39 - 134	4.4e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccII	CGCG	3 cut(s)	317, 372, 465
AciI	CCGC	2 cut(s)	315, 317
AcoI	YGGCCR	2 cut(s)	133, 252
AcuI	CTGAAG	3 cut(s)	224, 282, 582
AcyI	GRCGYC	1 cut(s)	599
AfiI	CCNNNNNNNGG	4 cut(s)	66, 333, 496, 727
AgsI	TTSAA	4 cut(s)	454, 608, 695, 704
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	5 cut(s)	110, 140, 208, 653, 700
AluI	AGCT	5 cut(s)	110, 140, 208, 653, 700
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	590
Alw44I	GTGCAC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	6 cut(s)	47, 133, 252, 324, 569, 718
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	140, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	2 cut(s)	372, 577
AspS9I	GGNCC	3 cut(s)	487, 630, 719
AsuHPI	GGTGA	4 cut(s)	84, 322, 628, 700
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	487, 630
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	2 cut(s)	135, 254
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	127, 662
BccI	CCATC	2 cut(s)	244, 490
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	590
BisI	GCNGC	3 cut(s)	141, 318, 651
BlsI	GCNGC	3 cut(s)	142, 319, 652
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	2 cut(s)	487, 630
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	3 cut(s)	487, 630, 719
BmiI	GGNNCC	2 cut(s)	488, 489
BmrFI	CCNGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	660
BsaHI	GRCGYC	1 cut(s)	599
BsaJI	CCNNGG	3 cut(s)	60, 315, 747
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 333, 496, 727
Bse1I	ACTGG	3 cut(s)	130, 338, 585
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	60, 315, 747
BseGI	GGATG	3 cut(s)	121, 220, 627
BseLI	CCNNNNNNNGG	4 cut(s)	66, 333, 496, 727
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	130, 338, 585
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	127, 662
Bsh1236I	CGCG	3 cut(s)	317, 372, 465
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	6 cut(s)	49, 135, 254, 326, 571, 720
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	3 cut(s)	181, 193, 500
BslI	CCNNNNNNNGG	4 cut(s)	66, 333, 496, 727
BsmAI	GTCTC	1 cut(s)	590
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	3 cut(s)	181, 193, 500
BsnI	GGCC	6 cut(s)	49, 135, 254, 326, 571, 720
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	658
Bsp68I	TCGCGA	1 cut(s)	465
BspACI	CCGC	2 cut(s)	315, 317
BspANI	GGCC	6 cut(s)	49, 135, 254, 326, 571, 720
BspCNI	CTCAG	1 cut(s)	311
BspFNI	CGCG	3 cut(s)	317, 372, 465
BspLI	GGNNCC	2 cut(s)	488, 489
BspQI	GCTCTTC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	130, 338, 585
BssECI	CCNNGG	3 cut(s)	60, 315, 747
BssMI	GATC	1 cut(s)	658
BssNI	GRCGYC	1 cut(s)	599
BssT1I	CCWWGG	2 cut(s)	60, 747
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	690
BstACI	GRCGYC	1 cut(s)	599
BstC8I	GCNNGC	5 cut(s)	24, 81, 210, 573, 762
BstDEI	CTNAG	1 cut(s)	298
BstDSI	CCRYGG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	121, 220, 627
BstFNI	CGCG	3 cut(s)	317, 372, 465
BstHHI	GCGC	2 cut(s)	372, 577
BstKTI	GATC	1 cut(s)	661
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	1 cut(s)	658
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 323, 376
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	474
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	3 cut(s)	317, 372, 465
BstV1I	GCAGC	2 cut(s)	127, 662
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	6 cut(s)	49, 135, 254, 326, 571, 720
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	121, 220, 627
BtsIMutI	CAGTG	3 cut(s)	123, 331, 578
BtuMI	TCGCGA	1 cut(s)	465
Cac8I	GCNNGC	5 cut(s)	24, 81, 210, 573, 762
CfoI	GCGC	2 cut(s)	372, 577
Cfr13I	GGNCC	3 cut(s)	487, 630, 719
Cfr42I	CCGCGG	1 cut(s)	318
CviAII	CATG	3 cut(s)	76, 256, 471
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
EaeI	YGGCCR	2 cut(s)	133, 252
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco130I	CCWWGG	2 cut(s)	60, 747
Eco47I	GGWCC	2 cut(s)	487, 630
Eco57I	CTGAAG	3 cut(s)	224, 282, 582
Eco88I	CYCGRG	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	310
EcoO109I	RGGNCCY	2 cut(s)	487, 630
EcoO65I	GGTNACC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	60, 747
ErhI	CCWWGG	2 cut(s)	60, 747
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	3 cut(s)	79, 259, 474
FaiI	YATR	8 cut(s)	11, 77, 165, 188, 257, 472, 519, 758
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	3 cut(s)	181, 193, 500
FatI	CATG	3 cut(s)	75, 255, 470
Fnu4HI	GCNGC	3 cut(s)	141, 318, 651
FokI	GGATG	3 cut(s)	128, 207, 634
Fsp4HI	GCNGC	3 cut(s)	141, 318, 651
GlaI	GCGC	2 cut(s)	371, 576
GluI	GCNGC	3 cut(s)	141, 318, 651
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	6 cut(s)	49, 135, 254, 326, 571, 720
HapII	CCGG	1 cut(s)	765
HhaI	GCGC	2 cut(s)	372, 577
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	3 cut(s)	79, 259, 474
Hin6I	GCGC	2 cut(s)	370, 575
HinP1I	GCGC	2 cut(s)	370, 575
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	194, 642
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	4 cut(s)	84, 322, 628, 700
Hpy166II	GTNNAC	4 cut(s)	34, 241, 331, 476
Hpy188I	TCNGA	4 cut(s)	249, 262, 562, 734
Hpy188III	TCNNGA	2 cut(s)	464, 639
Hpy8I	GTNNAC	4 cut(s)	34, 241, 331, 476
HpyAV	CCTTC	4 cut(s)	39, 506, 557, 602
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	2 cut(s)	237, 599
HpyCH4V	TGCA	4 cut(s)	212, 331, 401, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 323, 376
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	2 cut(s)	237, 599
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	3 cut(s)	79, 259, 474
HspAI	GCGC	2 cut(s)	370, 575
KflI	GGGWCCC	1 cut(s)	487
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	658
LguI	GCTCTTC	1 cut(s)	690
LpnPI	CCDG	8 cut(s)	65, 111, 319, 372, 399, 566, 585, 624
Lsp1109I	GCAGC	2 cut(s)	127, 662
MaeII	ACGT	2 cut(s)	237, 599
MaeIII	GTNAC	4 cut(s)	233, 310, 424, 739
MalI	GATC	1 cut(s)	660
MboI	GATC	1 cut(s)	658
MboII	GAAGA	3 cut(s)	275, 505, 707
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	2 cut(s)	135, 254
MluCI	AATT	1 cut(s)	396
MluNI	TGGCCA	2 cut(s)	135, 254
MlyI	GAGTC	2 cut(s)	203, 651
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	22, 234, 316, 353, 383, 612, 679
Mox20I	TGGCCA	2 cut(s)	135, 254
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	2 cut(s)	135, 254
MseI	TTAA	2 cut(s)	281, 626
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	2 cut(s)	135, 254
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
MvnI	CGCG	3 cut(s)	317, 372, 465
MwoI	GCNNNNNNNGC	3 cut(s)	166, 323, 376
NdeII	GATC	1 cut(s)	658
NlaIII	CATG	3 cut(s)	79, 259, 474
NlaIV	GGNNCC	2 cut(s)	488, 489
NmuCI	GTSAC	1 cut(s)	310
NruI	TCGCGA	1 cut(s)	465
NspI	RCATGY	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	699
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	3 cut(s)	142, 319, 652
PleI	GAGTC	2 cut(s)	202, 650
PpsI	GAGTC	2 cut(s)	202, 650
PpuMI	RGGWCCY	2 cut(s)	487, 630
Psp5II	RGGWCCY	2 cut(s)	487, 630
Psp6I	CCWGG	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	488, 489
PspPI	GGNCC	3 cut(s)	487, 630, 719
PspPPI	RGGWCCY	2 cut(s)	487, 630
PspXI	VCTCGAGB	1 cut(s)	225
RruI	TCGCGA	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	248
SacII	CCGCGG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	281, 626
SatI	GCNGC	3 cut(s)	141, 318, 651
Sau3AI	GATC	1 cut(s)	658
Sau96I	GGNCC	3 cut(s)	487, 630, 719
SchI	GAGTC	2 cut(s)	203, 651
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	318
SgrBI	CCGCGG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	487, 630
SlaI	CTCGAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	2 cut(s)	315, 317
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	2 cut(s)	60, 747
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	2 cut(s)	240, 602
TaqI	TCGA	3 cut(s)	15, 226, 339
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	1 cut(s)	396
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	281, 626
Tru9I	TTAA	2 cut(s)	281, 626
TscAI	CASTG	3 cut(s)	130, 338, 585
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	140, 650
Tsp45I	GTSAC	1 cut(s)	310
TspRI	CASTG	3 cut(s)	130, 338, 585
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	487, 630
XceI	RCATGY	1 cut(s)	474
XhoI	CTCGAG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.