Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

23180057 .. 23181883

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1117900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCAGGTTTGTTTGACAAGCAAGCTGATTTGTACTTGGATTCGAGGCCAACTTATCCCAAAGAATGGTATTCCAAATTGGCAGATCTCACTCCTCATCTCTCTCTCGCTTGGGATGTCGGAACCGGCAACGGCCAAGCCGCTATCGGCGTTGCTGAGCACTATAAACAAGTGATTGGAACCGATGTGACTGAATCCCAGCTGCAGCGTGCAATGCCACATCCTCTTGTTCGATATGCCCACACGCCGTTAACCATGACAGAAGACGAATTAATAGCCTTGATCGGGGGAGAAAGTTCAGTGGACTTGGTGACTGTGGCTCAAGCTGTGCACTGCGCTGGTTTCGGATGCGAGGGGAGTCCATTGGCGCTGGACATTCCAAAGAAGTTGTCTTTCGAAGGGTTTTTGAAGATTGTACGGTCATGGTCTGCAGTTAATACAGCCAAAGAACAAGGCGTGGATTTGTTGCCCGAAAAGCTGGTTAAAGAGTTTGAGGTTGCTTGGGGCGGCACCAAATTAGTCAGGTCTGTCAGCTACAAGGCTTTTATGCTCGCCGGAAATGTTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

191

Amino Acids

20.68

Weight (kDa)

5.72

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	66
AciI	CCGC	2 cut(s)	141, 507
AcoI	YGGCCR	1 cut(s)	133
AfaI	GTAC	2 cut(s)	35, 417
AfiI	CCNNNNNNNGG	2 cut(s)	66, 285
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	5 cut(s)	26, 202, 326, 478, 534
AluI	AGCT	5 cut(s)	26, 202, 326, 478, 534
Alw21I	GWGCWC	2 cut(s)	162, 333
Alw44I	GTGCAC	1 cut(s)	329
AoxI	GGCC	2 cut(s)	47, 133
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	202, 205
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AseI	ATTAAT	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	338, 370
AsuHPI	GGTGA	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	162, 333
BbvI	GCAGC	2 cut(s)	189, 217
BceAI	ACGGC	2 cut(s)	148, 232
BfmI	CTRYAG	2 cut(s)	203, 429
BfoI	RGCGCY	1 cut(s)	371
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	4 cut(s)	141, 203, 206, 508
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	4 cut(s)	142, 204, 207, 509
BmiI	GGNNCC	3 cut(s)	124, 181, 511
BmsI	GCATC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 285
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	219
BseGI	GGATG	3 cut(s)	121, 220, 353
BseLI	CCNNNNNNNGG	2 cut(s)	66, 285
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	189, 217
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	2 cut(s)	49, 135
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	162, 333
BsiSI	CCGG	2 cut(s)	126, 555
BslI	CCNNNNNNNGG	2 cut(s)	66, 285
BsnI	GGCC	2 cut(s)	49, 135
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	162, 333
Bsp143I	GATC	2 cut(s)	85, 282
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	141, 507
BspANI	GGCC	2 cut(s)	49, 135
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	124, 181, 511
BspMAI	CTGCAG	2 cut(s)	207, 433
BspT104I	TTCGAA	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	2 cut(s)	85, 282
Bst4CI	ACNGT	2 cut(s)	316, 420
BstBI	TTCGAA	1 cut(s)	396
BstC8I	GCNNGC	3 cut(s)	24, 210, 552
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	121, 220, 353
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	2 cut(s)	338, 370
BstKTI	GATC	2 cut(s)	88, 285
BstMBI	GATC	2 cut(s)	85, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 475
BstSFI	CTRYAG	2 cut(s)	203, 429
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	189, 217
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	49, 135
BtsCI	GGATG	3 cut(s)	121, 220, 353
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	306, 331
Cac8I	GCNNGC	3 cut(s)	24, 210, 552
CfoI	GCGC	2 cut(s)	338, 370
Cfr10I	RCCGGY	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	34, 416
CviAII	CATG	2 cut(s)	256, 423
CviQI	GTAC	2 cut(s)	34, 416
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	87, 284
DpnII	GATC	2 cut(s)	85, 282
EaeI	YGGCCR	1 cut(s)	133
FaeI	CATG	2 cut(s)	259, 426
FaiI	YATR	5 cut(s)	165, 237, 257, 424, 548
FatI	CATG	2 cut(s)	255, 422
Fnu4HI	GCNGC	4 cut(s)	141, 203, 206, 508
FokI	GGATG	3 cut(s)	128, 207, 360
Fsp4HI	GCNGC	4 cut(s)	141, 203, 206, 508
GlaI	GCGC	2 cut(s)	337, 369
GluI	GCNGC	4 cut(s)	141, 203, 206, 508
GsaI	CCCAGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	49, 135
HapII	CCGG	2 cut(s)	126, 555
HhaI	GCGC	2 cut(s)	338, 370
Hin1II	CATG	2 cut(s)	259, 426
Hin6I	GCGC	2 cut(s)	336, 368
HinP1I	GCGC	2 cut(s)	336, 368
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	3 cut(s)	41, 194, 358
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	126, 555
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	252, 304, 331
Hpy188I	TCNGA	2 cut(s)	122, 347
Hpy8I	GTNNAC	3 cut(s)	252, 304, 331
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	316, 420
HpyCH4V	TGCA	4 cut(s)	205, 212, 331, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 475
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	259, 426
HspAI	GCGC	2 cut(s)	336, 368
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	85, 282
LpnPI	CCDG	7 cut(s)	139, 212, 324, 356, 464, 508, 568
Lsp1109I	GCAGC	2 cut(s)	189, 217
LweI	GCATC	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	187, 310
MalI	GATC	2 cut(s)	87, 284
MboI	GATC	2 cut(s)	85, 282
MboII	GAAGA	2 cut(s)	275, 421
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	162, 333
MluCI	AATT	3 cut(s)	77, 269, 515
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	39, 105, 234, 346, 487
MseI	TTAA	5 cut(s)	251, 272, 435, 483, 564
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	126, 555
MwoI	GCNNNNNNNGC	2 cut(s)	214, 475
NdeII	GATC	2 cut(s)	85, 282
NlaIII	CATG	2 cut(s)	259, 426
NlaIV	GGNNCC	3 cut(s)	124, 181, 511
NmuCI	GTSAC	2 cut(s)	187, 310
NspV	TTCGAA	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	41, 194
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	142, 204, 207, 509
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	3 cut(s)	124, 181, 511
PstI	CTGCAG	2 cut(s)	207, 433
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	35, 417
RsaNI	GTAC	2 cut(s)	34, 416
SaqAI	TTAA	5 cut(s)	251, 272, 435, 483, 564
SatI	GCNGC	4 cut(s)	141, 203, 206, 508
Sau3AI	GATC	2 cut(s)	85, 282
SchI	GAGTC	1 cut(s)	367
SduI	GDGCHC	2 cut(s)	162, 333
SetI	ASST	9 cut(s)	10, 28, 204, 328, 480, 498, 527, 536, 570
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	2 cut(s)	203, 429
SfuI	TTCGAA	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	77, 269, 515
SsiI	CCGC	2 cut(s)	141, 507
TaaI	ACNGT	2 cut(s)	316, 420
TaqI	TCGA	3 cut(s)	44, 232, 396
TasI	AATT	3 cut(s)	77, 269, 515
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	2 cut(s)	143, 510
TfiI	GAWTC	2 cut(s)	41, 194
Tru1I	TTAA	5 cut(s)	251, 272, 435, 483, 564
Tru9I	TTAA	5 cut(s)	251, 272, 435, 483, 564
TscAI	CASTG	2 cut(s)	306, 338
TseFI	GTSAC	2 cut(s)	187, 310
TseI	GCWGC	2 cut(s)	202, 205
Tsp45I	GTSAC	2 cut(s)	187, 310
TspRI	CASTG	2 cut(s)	306, 338
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.