Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006031.1

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

111380 .. 111901

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006031.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggttgacttaatagggggcggtcatgaaaactcagttgatttgattacagtggctactgccgttcactggtttgatctgccacgcttctactcgcttgtcaaacgtcttctgcgtaaaccaggaggcataattgctgtttggtcctacagcagcatggacaacatggtcgtaagccctgactttgatcttgcaatgaagcgtttacacgacaattttcttccattttgggacccgaggacaaagtacccatttgagggttataggacacttccttttccatttgagagcgttggattgggtcgtgaaggtgaacctatcacacttgaaataccaagggaattgtcatttcagggggttgagaggatgttgaggtcttactctgtagtcactacggctaaagaccagggtgtggatttgttgtctgaagatgtgattaaagaacttcaaagagcttggggtgggcatgatctgattagatcagttacaatcaaggcatgtatgcttgtgggcaaattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

173

Amino Acids

19.63

Weight (kDa)

6.08

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	520
AasI	GACNNNNNNGTC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	412
AciI	CCGC	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	69, 256, 257, 412
AgsI	TTSAA	2 cut(s)	329, 449
AjnI	CCWGG	2 cut(s)	121, 405
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	144, 232
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	2 cut(s)	144, 232
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	165
BceAI	ACGGC	2 cut(s)	47, 411
BciT130I	CCWGG	2 cut(s)	123, 407
BfmI	CTRYAG	2 cut(s)	148, 384
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	123, 407
Bme18I	GGWCC	2 cut(s)	144, 232
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	144, 232
BmiI	GGNNCC	2 cut(s)	233, 234
BmrFI	CCNGG	2 cut(s)	123, 407
BpiI	GAAGAC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	236, 335, 406
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 256, 257, 412
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	123, 407
BseDI	CCNNGG	3 cut(s)	236, 335, 406
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	69, 256, 257, 412
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	69, 256, 257, 412
BsmFI	GGGAC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	76, 187, 469, 479
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	233, 234
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	236, 335, 406
BssMI	GATC	4 cut(s)	76, 187, 469, 479
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	123, 407
Bst4CI	ACNGT	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	4 cut(s)	79, 190, 472, 482
BstMBI	GATC	4 cut(s)	76, 187, 469, 479
BstNI	CCWGG	2 cut(s)	123, 407
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	2 cut(s)	121, 405
BstSFI	CTRYAG	2 cut(s)	148, 384
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	57, 67
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	144, 232
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	5 cut(s)	26, 157, 166, 467, 498
CviJI	RGCY	4 cut(s)	56, 177, 398, 455
CviKI_1	RGCY	4 cut(s)	56, 177, 398, 455
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	4 cut(s)	78, 189, 471, 481
DpnII	GATC	4 cut(s)	76, 187, 469, 479
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	144, 232
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	121, 405
EcoT14I	CCWWGG	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	5 cut(s)	29, 160, 169, 470, 501
FaiI	YATR	9 cut(s)	27, 131, 158, 167, 264, 468, 499, 503, 520
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	5 cut(s)	25, 156, 165, 466, 497
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	29, 160, 169, 470, 501
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	5 cut(s)	7, 67, 119, 206, 314
Hpy188I	TCNGA	2 cut(s)	427, 474
Hpy188III	TCNNGA	2 cut(s)	26, 305
Hpy8I	GTNNAC	5 cut(s)	7, 67, 119, 206, 314
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	5 cut(s)	29, 160, 169, 470, 501
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	76, 187, 469, 479
LpnPI	CCDG	7 cut(s)	55, 108, 135, 192, 338, 392, 419
Lsp1109I	GCAGC	1 cut(s)	165
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	2 cut(s)	388, 484
MalI	GATC	4 cut(s)	78, 189, 471, 481
MboI	GATC	4 cut(s)	76, 187, 469, 479
MboII	GAAGA	3 cut(s)	101, 212, 440
MluCI	AATT	4 cut(s)	132, 214, 341, 515
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	5 cut(s)	119, 231, 250, 357, 366
MseI	TTAA	2 cut(s)	11, 438
MspR9I	CCNGG	2 cut(s)	123, 407
MvaI	CCWGG	2 cut(s)	123, 407
NdeII	GATC	4 cut(s)	76, 187, 469, 479
NlaIII	CATG	5 cut(s)	29, 160, 169, 470, 501
NlaIV	GGNNCC	2 cut(s)	233, 234
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	501
PagI	TCATGA	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	121, 405
PspGI	CCWGG	2 cut(s)	121, 405
PspN4I	GGNNCC	2 cut(s)	233, 234
PspPI	GGNCC	2 cut(s)	144, 232
PspPPI	RGGWCCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	11, 438
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	4 cut(s)	76, 187, 469, 479
Sau96I	GGNCC	2 cut(s)	144, 232
ScrFI	CCNGG	2 cut(s)	123, 407
SetI	ASST	5 cut(s)	109, 313, 319, 377, 457
SfcI	CTRYAG	2 cut(s)	148, 384
SinI	GGWCC	2 cut(s)	144, 232
Sse9I	AATT	4 cut(s)	132, 214, 341, 515
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	121, 405
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	109
TasI	AATT	4 cut(s)	132, 214, 341, 515
Tru1I	TTAA	2 cut(s)	11, 438
Tru9I	TTAA	2 cut(s)	11, 438
TscAI	CASTG	2 cut(s)	57, 74
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	42, 212
TspRI	CASTG	2 cut(s)	57, 74
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	144, 232
XceI	RCATGY	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.