Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

38695908 .. 38712469

Gene Structure 16562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCACGTCTATTTGACAAGCAGGCAGAGATATACGTGGAAGCTCGGCCAACGTATCCCAAGGAATGGTATTCAAAGCTGTCTGCTCTCACCCCACAACACTCTTTAGCTTGGGATGCTGGCACTGGCAGTGGCCAAGCTACCGTCGGTCTTTTAGAGCATTACGACCAAGTAGTTGGAAGTGATATAAGTGAAGCACAATTGAAGCATGCCATCCAGCACCCTCGAGTTCGATACGTTCACACTCCAGCATCAATCTCAGACGATGAAATGGTTGACTTAATAGGGGGCGGTCATGAAAATTCAGTTGATTTGATTACAGTGGCTACTGCCGTTCACTGGTTTGATCTGCCACGCTTCTACTCGCTTGTCAAACGTCTTCTGCGTAAACCAGGAGGCATAATTGCTGTTTGGACCTACAAAAGCATGGACTTCATGGTCGTAAGCCCTGACTTTGATCTTGCAATGAAGCGTTTACACGAAAATTGTCTTCCATTTTGGGACCCGAGAGCAAAGTACGCATTTGAGGGTTATAGGACACTTCCTTTTCCATTTGAGAGCGTTGGATTGGGTCGTGAAGGTGAACCTATCCCACTTGAAATACCAAGGGAATTGTCATTTCAGGGGGTTGAGAGGATGTTGAGGTCTTACTCTGCAGTCCCTACGGCTAAAGACCAGGGTGTGGATTTGTTGTCTGAAGATGTGATTAAAGAACTTCAAAGAGCTTGGGGTGGGCATGATCTGATTAGATCAGTTACAGTCAAGGCATGTATGCTTGTGGGCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

264

Amino Acids

29.63

Weight (kDa)

5.99

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 136	4.5e-09	Methyltransferase domain
Methyltransf_25	PF13649	39 - 132	3.1e-08	Methyltransferase domain
Methyltransf_12	PF08242	39 - 134	3.7e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	790
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB7I	CCANNNNNTGG	2 cut(s)	66, 682
AciI	CCGC	1 cut(s)	291
AcoI	YGGCCR	2 cut(s)	47, 133
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	66, 339, 682
AgsI	TTSAA	4 cut(s)	75, 205, 599, 719
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	2 cut(s)	391, 675
AluBI	AGCT	5 cut(s)	44, 79, 110, 140, 725
AluI	AGCT	5 cut(s)	44, 79, 110, 140, 725
Ama87I	CYCGRG	2 cut(s)	225, 505
AoxI	GGCC	2 cut(s)	47, 133
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	414, 502
AsuHPI	GGTGA	2 cut(s)	82, 593
AvaI	CYCGRG	2 cut(s)	225, 505
AvaII	GGWCC	2 cut(s)	414, 502
BalI	TGGCCA	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	371, 482
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	317, 681
BciT130I	CCWGG	2 cut(s)	393, 677
BciVI	GTATCC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	393, 677
Bme18I	GGWCC	2 cut(s)	414, 502
BmeT110I	CYCGRG	2 cut(s)	225, 505
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	414, 502
BmiI	GGNNCC	2 cut(s)	503, 504
BmrFI	CCNGG	2 cut(s)	393, 677
BmsI	GCATC	2 cut(s)	106, 260
BpiI	GAAGAC	2 cut(s)	371, 482
BpmI	CTGGAG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	60, 605, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 339, 682
Bse1I	ACTGG	2 cut(s)	130, 344
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	393, 677
BseDI	CCNNGG	3 cut(s)	60, 605, 676
BseGI	GGATG	3 cut(s)	121, 213, 642
BseLI	CCNNNNNNNGG	3 cut(s)	66, 339, 682
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	130, 344
BshFI	GGCC	2 cut(s)	49, 135
BsiHKCI	CYCGRG	2 cut(s)	225, 505
BslFI	GGGAC	2 cut(s)	515, 644
BslI	CCNNNNNNNGG	3 cut(s)	66, 339, 682
BsmFI	GGGAC	2 cut(s)	515, 644
BsnI	GGCC	2 cut(s)	49, 135
BsoBI	CYCGRG	2 cut(s)	225, 505
Bsp143I	GATC	4 cut(s)	346, 457, 739, 749
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	49, 135
BspCNI	CTCAG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	503, 504
BspMAI	CTGCAG	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	130, 344
BssECI	CCNNGG	3 cut(s)	60, 605, 676
BssMI	GATC	4 cut(s)	346, 457, 739, 749
BssT1I	CCWWGG	2 cut(s)	60, 605
Bst2UI	CCWGG	2 cut(s)	393, 677
Bst4CI	ACNGT	3 cut(s)	145, 322, 760
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	24, 121, 210
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	121, 213, 642
BstKTI	GATC	4 cut(s)	349, 460, 742, 752
BstMBI	GATC	4 cut(s)	346, 457, 739, 749
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 518
BstNI	CCWGG	2 cut(s)	393, 677
BstNSI	RCATGY	2 cut(s)	212, 771
BstSCI	CCNGG	2 cut(s)	391, 675
BstSFI	CTRYAG	1 cut(s)	654
BstV2I	GAAGAC	2 cut(s)	371, 482
BstXI	CCANNNNNNTGG	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	49, 135
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	3 cut(s)	121, 213, 642
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	4 cut(s)	123, 136, 327, 337
Cac8I	GCNNGC	3 cut(s)	24, 121, 210
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	414, 502
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	6 cut(s)	209, 296, 427, 436, 737, 768
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	4 cut(s)	348, 459, 741, 751
DpnII	GATC	4 cut(s)	346, 457, 739, 749
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	2 cut(s)	47, 133
Eco130I	CCWWGG	2 cut(s)	60, 605
Eco47I	GGWCC	2 cut(s)	414, 502
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	2 cut(s)	225, 505
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	391, 675
EcoT14I	CCWWGG	2 cut(s)	60, 605
ErhI	CCWWGG	2 cut(s)	60, 605
FaeI	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
FaqI	GGGAC	2 cut(s)	515, 644
FatI	CATG	6 cut(s)	208, 295, 426, 435, 736, 767
FokI	GGATG	3 cut(s)	128, 200, 649
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	49, 135
Hin1II	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HphI	GGTGA	2 cut(s)	82, 593
Hpy166II	GTNNAC	6 cut(s)	241, 277, 337, 389, 476, 584
Hpy188I	TCNGA	3 cut(s)	262, 697, 744
Hpy188III	TCNNGA	2 cut(s)	296, 575
Hpy8I	GTNNAC	6 cut(s)	241, 277, 337, 389, 476, 584
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	3 cut(s)	145, 322, 760
HpyCH4IV	ACGT	5 cut(s)	7, 36, 53, 237, 376
HpyCH4V	TGCA	2 cut(s)	464, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 518
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	5 cut(s)	7, 36, 53, 237, 376
Hsp92II	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
KflI	GGGWCCC	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	346, 457, 739, 749
LweI	GCATC	2 cut(s)	106, 260
MaeII	ACGT	5 cut(s)	7, 36, 53, 237, 376
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	4 cut(s)	348, 459, 741, 751
MboI	GATC	4 cut(s)	346, 457, 739, 749
MboII	GAAGA	3 cut(s)	371, 482, 710
MfeI	CAATTG	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	157, 544
MnlI	CCTC	5 cut(s)	234, 389, 520, 627, 636
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	281, 708
Msp20I	TGGCCA	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	393, 677
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	2 cut(s)	393, 677
MwoI	GCNNNNNNNGC	2 cut(s)	116, 518
NdeII	GATC	4 cut(s)	346, 457, 739, 749
NlaIII	CATG	6 cut(s)	212, 299, 430, 439, 740, 771
NlaIV	GGNNCC	2 cut(s)	503, 504
NmeAIII	GCCGAG	1 cut(s)	25
NspI	RCATGY	2 cut(s)	212, 771
PaeI	GCATGC	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	225
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PflMI	CCANNNNNTGG	2 cut(s)	66, 682
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	790
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	391, 675
PspGI	CCWGG	2 cut(s)	391, 675
PspN4I	GGNNCC	2 cut(s)	503, 504
PspPI	GGNCC	2 cut(s)	414, 502
PspPPI	RGGWCCY	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	658
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	281, 708
Sau3AI	GATC	4 cut(s)	346, 457, 739, 749
Sau96I	GGNCC	2 cut(s)	414, 502
ScrFI	CCNGG	2 cut(s)	393, 677
SfaNI	GCATC	2 cut(s)	106, 260
SfcI	CTRYAG	1 cut(s)	654
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	414, 502
SlaI	CTCGAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
SsiI	CCGC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	391, 675
StyI	CCWWGG	2 cut(s)	60, 605
TaaI	ACNGT	3 cut(s)	145, 322, 760
TaiI	ACGT	5 cut(s)	10, 39, 56, 240, 379
TaqI	TCGA	2 cut(s)	226, 232
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	200, 301, 402, 484, 611, 785
Tru1I	TTAA	2 cut(s)	281, 708
Tru9I	TTAA	2 cut(s)	281, 708
TscAI	CASTG	4 cut(s)	130, 136, 327, 344
TspDTI	ATGAA	4 cut(s)	282, 312, 424, 482
TspRI	CASTG	4 cut(s)	130, 136, 327, 344
Van91I	CCANNNNNTGG	2 cut(s)	66, 682
VpaK11BI	GGWCC	2 cut(s)	414, 502
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	2 cut(s)	212, 771
XhoI	CTCGAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.