Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

38692467 .. 38695330

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029427

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGAGAATTTCATACCCGTATAAAATCTTTGCAATGAATCTCAGATCTGCCCAAAAGGGTACACTTTCCGATGGGAGGGTAGTGGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGGAAGAGTCAATTTGCTGCAGAAATTGCTACCATATCTGCAGTGCAACATCGCAATCTAGTGAAATTATTCTGCCAGTTGCTGCCACTTACATTGGAGATAGGTCAACCACCACTCAAAGCAATTAGACTTTCTTGTGAAGACCTATATGATAGACAGGACAAACAGAGATTGTGCATGAATCTTGATGAGGAAACGTTTCACATTCATCATGGATTAAATGAAGACTTCTATATATTCAGATTTATAATTAGCAGTGAGCAGTTGCTTAACATTTTGTACAATGGCGGTAGTTCTTCTATATCGAGCTCCTTGGATGACCGGTTGTTTCATGAGTCCGCTCTTGATCAATCTGAGAGGTTCCCAACTTTAAACCGATGGATACAAATGCAAACTAACCTGCATCGAGTTTCAGAGTTTGCTGTAACAGTTAAGCAATCTGACGATGGTGGTGAGGCCAGAGGTGAAGCAAAAGCTGCTATTAAGAGGCTTCGCGAGCTTGACAGTGATACTGAGTCAGAAGTTGATGATATTGTTGGTAATAGTGTTTCAACAGCTTTATCAGCTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.86

Weight (kDa)

5.98

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	528
AccBSI	CCGCTC	1 cut(s)	461
AccII	CGCG	1 cut(s)	615
AciI	CCGC	2 cut(s)	408, 459
AclI	AACGTT	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	2 cut(s)	64, 401
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	672
AluBI	AGCT	5 cut(s)	429, 596, 619, 677, 686
AluI	AGCT	5 cut(s)	429, 596, 619, 677, 686
Alw21I	GWGCWC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	3 cut(s)	137, 202, 596
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	441
Asp700I	GAANNNNTTC	2 cut(s)	188, 318
AsuHPI	GGTGA	3 cut(s)	107, 584, 596
BanII	GRGCYC	1 cut(s)	431
BbsI	GAAGAC	2 cut(s)	267, 351
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	124, 189, 583
BccI	CCATC	3 cut(s)	68, 492, 560
BciVI	GTATCC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	466
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	138, 159
BfuAI	ACCTGC	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	495
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	3 cut(s)	138, 203, 597
BlsI	GCNGC	3 cut(s)	139, 204, 598
BmiI	GGNNCC	1 cut(s)	482
BmsI	GCATC	2 cut(s)	119, 532
BpiI	GAAGAC	2 cut(s)	267, 351
BsaJI	CCNNGG	2 cut(s)	118, 432
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	118, 432
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	58, 465, 624
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	3 cut(s)	124, 189, 583
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	578
BshTI	ACCGGT	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	78
BsnI	GGCC	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	47, 466
Bsp68I	TCGCGA	1 cut(s)	615
BspACI	CCGC	2 cut(s)	408, 459
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	3 cut(s)	57, 466, 625
BspFNI	CGCG	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	482
BspMAI	CTGCAG	2 cut(s)	142, 163
BspMI	ACCTGC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	441
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	118, 432
BssMI	GATC	2 cut(s)	47, 466
BssT1I	CCWWGG	2 cut(s)	118, 432
Bst4CI	ACNGT	2 cut(s)	550, 626
Bst6I	CTCTTC	1 cut(s)	119
BstAPI	GCANNNNNTGC	2 cut(s)	146, 596
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	3 cut(s)	44, 474, 633
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	615
BstKTI	GATC	2 cut(s)	50, 469
BstMBI	GATC	2 cut(s)	47, 466
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 596, 616, 683
BstSFI	CTRYAG	2 cut(s)	138, 159
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	3 cut(s)	124, 189, 583
BstV2I	GAAGAC	2 cut(s)	267, 351
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	2 cut(s)	168, 382
BtsIMutI	CAGTG	3 cut(s)	168, 382, 631
BtuMI	TCGCGA	1 cut(s)	615
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	617
CaiI	CAGNNNCTG	1 cut(s)	202
CciI	TCATGA	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	63, 400
CspAI	ACCGGT	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	3 cut(s)	298, 332, 452
CviJI	RGCY	8 cut(s)	89, 429, 578, 596, 610, 619, 677, 686
CviKI_1	RGCY	8 cut(s)	89, 429, 578, 596, 610, 619, 677, 686
CviQI	GTAC	2 cut(s)	63, 400
DdeI	CTNAG	3 cut(s)	44, 474, 633
DpnI	GATC	2 cut(s)	49, 468
DpnII	GATC	2 cut(s)	47, 466
DraI	TTTAAA	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	118, 432
Eco24I	GRGCYC	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	118, 432
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	2 cut(s)	118, 432
FaeI	CATG	3 cut(s)	301, 335, 455
FatI	CATG	3 cut(s)	297, 331, 451
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	138, 203, 597
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	138, 203, 597
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	3 cut(s)	138, 203, 597
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	1 cut(s)	442
Hin1II	CATG	3 cut(s)	301, 335, 455
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	5 cut(s)	40, 127, 301, 455, 635
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	3 cut(s)	107, 584, 596
Hpy166II	GTNNAC	2 cut(s)	65, 227
Hpy188I	TCNGA	7 cut(s)	47, 73, 362, 475, 535, 562, 640
Hpy188III	TCNNGA	4 cut(s)	305, 452, 464, 614
Hpy8I	GTNNAC	2 cut(s)	65, 227
HpyCH4III	ACNGT	2 cut(s)	550, 626
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	7 cut(s)	35, 140, 161, 166, 297, 511, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 596, 616, 683
HpyF3I	CTNAG	3 cut(s)	44, 474, 633
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	301, 335, 455
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	47, 466
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	5 cut(s)	209, 263, 455, 533, 592
Lsp1109I	GCAGC	3 cut(s)	124, 189, 583
LweI	GCATC	2 cut(s)	119, 532
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	2 cut(s)	49, 468
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	2 cut(s)	47, 466
MboII	GAAGA	4 cut(s)	136, 272, 356, 408
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	6 cut(s)	9, 131, 144, 185, 243, 369
MlyI	GAGTC	3 cut(s)	136, 464, 644
MnlI	CCTC	6 cut(s)	72, 304, 471, 568, 575, 600
MroXI	GAANNNNTTC	2 cut(s)	188, 318
MseI	TTAA	5 cut(s)	338, 390, 491, 552, 603
MspI	CCGG	1 cut(s)	442
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	4 cut(s)	146, 596, 616, 683
NdeII	GATC	2 cut(s)	47, 466
NlaIII	CATG	3 cut(s)	301, 335, 455
NlaIV	GGNNCC	1 cut(s)	482
NruI	TCGCGA	1 cut(s)	615
PagI	TCATGA	1 cut(s)	451
PdmI	GAANNNNTTC	2 cut(s)	188, 318
PfeI	GAWTC	2 cut(s)	40, 301
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	139, 204, 598
PleI	GAGTC	3 cut(s)	135, 463, 643
PpsI	GAGTC	3 cut(s)	135, 463, 643
PsiI	TTATAA	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	431
Psp1406I	AACGTT	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	482
PstI	CTGCAG	2 cut(s)	142, 163
PstNI	CAGNNNCTG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	47
RruI	TCGCGA	1 cut(s)	615
RsaI	GTAC	2 cut(s)	64, 401
RsaNI	GTAC	2 cut(s)	63, 400
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	5 cut(s)	338, 390, 491, 552, 603
SatI	GCNGC	3 cut(s)	138, 203, 597
Sau3AI	GATC	2 cut(s)	47, 466
SchI	GAGTC	3 cut(s)	136, 464, 644
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	2 cut(s)	119, 532
SfcI	CTRYAG	2 cut(s)	138, 159
Sse9I	AATT	6 cut(s)	9, 131, 144, 185, 243, 369
SsiI	CCGC	2 cut(s)	408, 459
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	118, 432
TaaI	ACNGT	2 cut(s)	550, 626
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	3 cut(s)	425, 526, 688
TasI	AATT	6 cut(s)	9, 131, 144, 185, 243, 369
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	40, 301
Tru1I	TTAA	5 cut(s)	338, 390, 491, 552, 603
Tru9I	TTAA	5 cut(s)	338, 390, 491, 552, 603
TscAI	CASTG	3 cut(s)	168, 382, 631
TseI	GCWGC	3 cut(s)	137, 202, 596
TspDTI	ATGAA	5 cut(s)	53, 314, 317, 357, 440
TspRI	CASTG	3 cut(s)	168, 382, 631
XapI	RAATTY	1 cut(s)	9
XmnI	GAANNNNTTC	2 cut(s)	188, 318
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.