Rmu_sc0000574.1_g000002

methyltransferase DDB_G0268948

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000574.1
OG0001059
Physical Location & Seq
Forward (+)
170 .. 4796
4627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000574.1_g000002.1.cds

Sequence Viewer

Length: 1089 bp
atgccggaatccggacaccagtcaggtagccggattcctgattcatgtgaccggtcgccggattccggtcatcggtggccgaatcccggtgaccggtcgccggattccagtcaccggagtcggcgcccggccactggttaccggaggcaggcaaggagccacagaccacgttatataattaagcctctcacctcccaactcccacctctggcaagctctttcaatcttctaccttctccaacagtggccggaaataggaaaatggcacgtccatttgacaagcaggcagagatatacgtggaagctcggccaacgtatcaggcagagatatacgtggaagctcggccaacgtatcccaaggaatggtattcaaagctggctgctctcaccccacaacactctttagcttgggatgttggcactggcagtggccaagctaccgtcggtcttttagagcattacgaccaagtagttggaagtgatataagtgaagcacaattgaaccatgccatccagcaccctcgagttcgatacgttcacactccaacatcaatctcagacgatgaaatggttgacttaatagggggcggtcatgaaaactcagttgatttgattacagtggctactgccgttcactggtttgatctgccacgcttctactcgcttgtcaaacgtcttctgcgtaaaccaggaggcataattgctgtttggtcctacagcagcatggacaacatggtcgtaagccctgactttgatcttgcaatgaagcgtttacacgacaattttcttccattttgggacccgaggacaaagtacgcatttgagggttataggacacttccttttccatttgagagcgttggattgggtcgtgaaggtgaacctatcacacttgaaataccaagggaattgtcatttcagggggttgagaggatgttgaggtcttactctgtagtcactacggctaaagaccagggtgtggatttgttgtctgaagatgtgattaaagaacttcaaagagcttggggtgggcatgatctgattagatcagttacaatcaaggcatgtatgcttgtgggcaaattataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

362

Amino Acids

40.75

Weight (kDa)

7.84

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1087
AasI GACNNNNNNGTC 1 cut(s) 734
AccB1I GGYRCC 1 cut(s) 123
AccB7I CCANNNNNTGG 2 cut(s) 363, 979
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 1 cut(s) 588
AcoI YGGCCR 6 cut(s) 77, 129, 246, 308, 344, 430
AcuI CTGAAG 1 cut(s) 1014
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 1 cut(s) 815
AgeI ACCGGT 2 cut(s) 51, 93
AgsI TTSAA 5 cut(s) 223, 372, 502, 896, 1016
AjiI CACGTC 1 cut(s) 269
AjnI CCWGG 2 cut(s) 688, 972
AluBI AGCT 7 cut(s) 216, 305, 341, 376, 407, 437, 1022
AluI AGCT 7 cut(s) 216, 305, 341, 376, 407, 437, 1022
Ama87I CYCGRG 2 cut(s) 522, 802
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 6 cut(s) 77, 129, 246, 308, 344, 430
ApeKI GCWGC 2 cut(s) 380, 720
AsiGI ACCGGT 2 cut(s) 51, 93
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 711, 799
AsuC2I CCSGG 2 cut(s) 87, 128
AsuHPI GGTGA 5 cut(s) 101, 104, 181, 379, 890
AvaI CYCGRG 2 cut(s) 522, 802
AvaII GGWCC 2 cut(s) 711, 799
BalI TGGCCA 1 cut(s) 432
BanI GGYRCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 668
BbvI GCAGC 2 cut(s) 367, 732
BccI CCATC 1 cut(s) 518
BceAI ACGGC 2 cut(s) 614, 978
BciT130I CCWGG 2 cut(s) 690, 974
BciVI GTATCC 1 cut(s) 363
BcnI CCSGG 2 cut(s) 87, 128
BfmI CTRYAG 2 cut(s) 715, 951
BfoI RGCGCY 1 cut(s) 127
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 2 cut(s) 381, 721
BlsI GCNGC 2 cut(s) 382, 722
Bme1390I CCNGG 4 cut(s) 87, 128, 690, 974
Bme18I GGWCC 2 cut(s) 711, 799
BmeT110I CYCGRG 2 cut(s) 522, 802
BmgBI CACGTC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 711, 799
BmiI GGNNCC 4 cut(s) 125, 158, 800, 801
BmrFI CCNGG 4 cut(s) 87, 128, 690, 974
BoxI GACNNNNGTC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 668
BpuMI CCSGG 2 cut(s) 87, 128
BsaAI YACGTR 2 cut(s) 298, 334
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 4 cut(s) 357, 803, 902, 973
BsaWI WCCGGW 6 cut(s) 11, 51, 65, 93, 114, 141
Bse118I RCCGGY 2 cut(s) 51, 93
Bse1I ACTGG 5 cut(s) 19, 108, 139, 427, 641
Bse3DI GCAATG 1 cut(s) 768
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 2 cut(s) 690, 974
BseDI CCNNGG 4 cut(s) 357, 803, 902, 973
BseGI GGATG 3 cut(s) 418, 510, 939
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 570, 615
BseNI ACTGG 5 cut(s) 19, 108, 139, 427, 641
BseXI GCAGC 2 cut(s) 367, 732
Bsh1285I CGRYCG 2 cut(s) 56, 98
BshFI GGCC 6 cut(s) 79, 131, 248, 310, 346, 432
BshNI GGYRCC 1 cut(s) 123
BshTI ACCGGT 2 cut(s) 51, 93
BsiEI CGRYCG 2 cut(s) 56, 98
BsiHKCI CYCGRG 2 cut(s) 522, 802
BslFI GGGAC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 812
BsnI GGCC 6 cut(s) 79, 131, 248, 310, 346, 432
BsoBI CYCGRG 2 cut(s) 522, 802
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 4 cut(s) 643, 754, 1036, 1046
BspACI CCGC 1 cut(s) 588
BspANI GGCC 6 cut(s) 79, 131, 248, 310, 346, 432
BspCNI CTCAG 2 cut(s) 569, 614
BspEI TCCGGA 1 cut(s) 11
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 4 cut(s) 125, 158, 800, 801
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 2 cut(s) 51, 93
BsrI ACTGG 5 cut(s) 19, 108, 139, 427, 641
BssAI RCCGGY 2 cut(s) 51, 93
BssECI CCNNGG 4 cut(s) 357, 803, 902, 973
BssMI GATC 4 cut(s) 643, 754, 1036, 1046
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 357, 902
Bst2UI CCWGG 2 cut(s) 690, 974
Bst4CI ACNGT 3 cut(s) 244, 442, 619
BstACI GRCGYC 1 cut(s) 124
BstBAI YACGTR 2 cut(s) 298, 334
BstC8I GCNNGC 4 cut(s) 150, 214, 285, 378
BstDEI CTNAG 2 cut(s) 556, 601
BstEII GGTNACC 2 cut(s) 89, 137
BstF5I GGATG 3 cut(s) 418, 510, 939
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 4 cut(s) 646, 757, 1039, 1049
BstMBI GATC 4 cut(s) 643, 754, 1036, 1046
BstMCI CGRYCG 2 cut(s) 56, 98
BstNI CCWGG 2 cut(s) 690, 974
BstNSI RCATGY 1 cut(s) 1068
BstPAI GACNNNNGTC 1 cut(s) 19
BstPI GGTNACC 2 cut(s) 89, 137
BstSCI CCNGG 4 cut(s) 85, 126, 688, 972
BstSFI CTRYAG 2 cut(s) 715, 951
BstV1I GCAGC 2 cut(s) 367, 732
BstV2I GAAGAC 1 cut(s) 668
BstXI CCANNNNNNTGG 1 cut(s) 473
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 6 cut(s) 79, 131, 248, 310, 346, 432
BtrI CACGTC 1 cut(s) 269
BtsCI GGATG 3 cut(s) 418, 510, 939
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 6 cut(s) 132, 249, 420, 433, 624, 634
Cac8I GCNNGC 4 cut(s) 150, 214, 285, 378
CciI TCATGA 1 cut(s) 592
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 2 cut(s) 51, 93
Cfr13I GGNCC 2 cut(s) 711, 799
Csp6I GTAC 1 cut(s) 814
CspAI ACCGGT 2 cut(s) 51, 93
CviAII CATG 7 cut(s) 45, 506, 593, 724, 733, 1034, 1065
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 2 cut(s) 556, 601
DinI GGCGCC 1 cut(s) 125
DpnI GATC 4 cut(s) 645, 756, 1038, 1048
DpnII GATC 4 cut(s) 643, 754, 1036, 1046
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
EaeI YGGCCR 6 cut(s) 77, 129, 246, 308, 344, 430
Eco130I CCWWGG 2 cut(s) 357, 902
Eco47I GGWCC 2 cut(s) 711, 799
Eco57I CTGAAG 1 cut(s) 1014
Eco88I CYCGRG 2 cut(s) 522, 802
Eco91I GGTNACC 2 cut(s) 89, 137
EcoO109I RGGNCCY 1 cut(s) 799
EcoO65I GGTNACC 2 cut(s) 89, 137
EcoRII CCWGG 2 cut(s) 688, 972
EcoT14I CCWWGG 2 cut(s) 357, 902
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
ErhI CCWWGG 2 cut(s) 357, 902
FaeI CATG 7 cut(s) 48, 509, 596, 727, 736, 1037, 1068
FaqI GGGAC 1 cut(s) 812
FatI CATG 7 cut(s) 44, 505, 592, 723, 732, 1033, 1064
Fnu4HI GCNGC 2 cut(s) 381, 721
FokI GGATG 3 cut(s) 425, 497, 946
Fsp4HI GCNGC 2 cut(s) 381, 721
GlaI GCGC 1 cut(s) 125
GluI GCNGC 2 cut(s) 381, 721
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 6 cut(s) 79, 131, 248, 310, 346, 432
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 7 cut(s) 48, 509, 596, 727, 736, 1037, 1068
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 7 cut(s) 8, 34, 41, 62, 82, 104, 118
HphI GGTGA 5 cut(s) 101, 104, 181, 379, 890
Hpy166II GTNNAC 6 cut(s) 538, 574, 634, 686, 773, 881
Hpy188I TCNGA 3 cut(s) 559, 994, 1041
Hpy188III TCNNGA 4 cut(s) 12, 38, 593, 872
Hpy8I GTNNAC 6 cut(s) 538, 574, 634, 686, 773, 881
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 243, 869
HpyCH4III ACNGT 3 cut(s) 244, 442, 619
HpyCH4IV ACGT 8 cut(s) 169, 268, 297, 314, 333, 350, 534, 673
HpyCH4V TGCA 1 cut(s) 761
HpyF3I CTNAG 2 cut(s) 556, 601
HpySE526I ACGT 8 cut(s) 169, 268, 297, 314, 333, 350, 534, 673
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 7 cut(s) 48, 509, 596, 727, 736, 1037, 1068
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
KflI GGGWCCC 1 cut(s) 799
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 4 cut(s) 643, 754, 1036, 1046
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 2 cut(s) 367, 732
MaeII ACGT 8 cut(s) 169, 268, 297, 314, 333, 350, 534, 673
MaeIII GTNAC 6 cut(s) 47, 89, 110, 137, 955, 1051
MalI GATC 4 cut(s) 645, 756, 1038, 1048
MboI GATC 4 cut(s) 643, 754, 1036, 1046
MboII GAAGA 4 cut(s) 218, 668, 779, 1007
MfeI CAATTG 1 cut(s) 497
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 6 cut(s) 177, 497, 699, 781, 908, 1082
MluNI TGGCCA 1 cut(s) 432
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 4 cut(s) 263, 454, 569, 841
Mox20I TGGCCA 1 cut(s) 432
MroI TCCGGA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 432
MseI TTAA 3 cut(s) 180, 578, 1005
Msp20I TGGCCA 1 cut(s) 432
MspR9I CCNGG 4 cut(s) 87, 128, 690, 974
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 2 cut(s) 690, 974
NarI GGCGCC 1 cut(s) 124
NciI CCSGG 2 cut(s) 87, 128
NdeII GATC 4 cut(s) 643, 754, 1036, 1046
NlaIII CATG 7 cut(s) 48, 509, 596, 727, 736, 1037, 1068
NlaIV GGNNCC 4 cut(s) 125, 158, 800, 801
NmeAIII GCCGAG 2 cut(s) 286, 322
NmuCI GTSAC 4 cut(s) 47, 89, 110, 955
NspI RCATGY 1 cut(s) 1068
PaeR7I CTCGAG 1 cut(s) 522
PagI TCATGA 1 cut(s) 592
PcsI WCGNNNNNNNCGW 1 cut(s) 679
PfeI GAWTC 6 cut(s) 8, 34, 41, 62, 82, 104
PflMI CCANNNNNTGG 2 cut(s) 363, 979
PinAI ACCGGT 2 cut(s) 51, 93
PkrI GCNGC 2 cut(s) 382, 722
PleI GAGTC 1 cut(s) 126
PluTI GGCGCC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 2 cut(s) 298, 334
PpuMI RGGWCCY 1 cut(s) 799
PshAI GACNNNNGTC 1 cut(s) 19
PsiI TTATAA 1 cut(s) 1087
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 688, 972
PspEI GGTNACC 2 cut(s) 89, 137
PspGI CCWGG 2 cut(s) 688, 972
PspN4I GGNNCC 4 cut(s) 125, 158, 800, 801
PspPI GGNCC 2 cut(s) 711, 799
PspPPI RGGWCCY 1 cut(s) 799
PspXI VCTCGAGB 1 cut(s) 522
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
SaqAI TTAA 3 cut(s) 180, 578, 1005
SatI GCNGC 2 cut(s) 381, 721
Sau3AI GATC 4 cut(s) 643, 754, 1036, 1046
Sau96I GGNCC 2 cut(s) 711, 799
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 4 cut(s) 87, 128, 690, 974
SfcI CTRYAG 2 cut(s) 715, 951
SfoI GGCGCC 1 cut(s) 125
Sfr274I CTCGAG 1 cut(s) 522
SinI GGWCC 2 cut(s) 711, 799
SlaI CTCGAG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 522
SmoI CTYRAG 1 cut(s) 522
Sse9I AATT 6 cut(s) 177, 497, 699, 781, 908, 1082
SsiI CCGC 1 cut(s) 588
SspDI GGCGCC 1 cut(s) 123
StyD4I CCNGG 4 cut(s) 85, 126, 688, 972
StyI CCWWGG 2 cut(s) 357, 902
TaaI ACNGT 3 cut(s) 244, 442, 619
TaiI ACGT 8 cut(s) 172, 271, 300, 317, 336, 353, 537, 676
TaqI TCGA 2 cut(s) 523, 529
TaqII GACCGA 1 cut(s) 434
TasI AATT 6 cut(s) 177, 497, 699, 781, 908, 1082
TfiI GAWTC 6 cut(s) 8, 34, 41, 62, 82, 104
Tru1I TTAA 3 cut(s) 180, 578, 1005
Tru9I TTAA 3 cut(s) 180, 578, 1005
TscAI CASTG 6 cut(s) 139, 249, 427, 433, 624, 641
TseFI GTSAC 4 cut(s) 47, 89, 110, 955
TseI GCWGC 2 cut(s) 380, 720
Tsp45I GTSAC 4 cut(s) 47, 89, 110, 955
TspDTI ATGAA 4 cut(s) 33, 579, 609, 779
TspRI CASTG 6 cut(s) 139, 249, 427, 433, 624, 641
Van91I CCANNNNNTGG 2 cut(s) 363, 979
VpaK11BI GGWCC 2 cut(s) 711, 799
XceI RCATGY 1 cut(s) 1068
XhoI CTCGAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.