Rorug07G0291000

methyltransferase DDB_G0268948

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
28389563 .. 28391707
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0291000.1

Sequence Viewer

Length: 426 bp
ATGGCAGCATCTCTCGGTTCAGATCGGTTCCCCCCTGACAATTTTCACTCTTCCCTCCACTTAGACTTCCTCTTCCTCACGTTTCAGCCGTTTCTCACTCTTCCTATTTACCCTTTGGTCTCAATCCAAACTTCATTCATCTTTGGGTGCTGGTGCTTTGAACTTTCATCATTTACTTCGTACCCAACTGTTAGAGGATTCACTGCGATTGGAAGCGGAGGGGATGATTTTGTGCAGGCTATGGTTGTTGCTGTTGAATCCGTAATTCAACAACCCGTCCTTGAGGGTCGTGTCAAGCAGAAGCTATCATCAGGAGGCAAATATGTGTCTGTAAACATTGGTCCTGTTCAAGTCATTTCTAGTGAACAGGTCCAAGCTGTATACAATGCAATGAGAAGAGATGACCGGATGAAATACTTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

6.04

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF493 PF04359 59 - 141 7.7e-20 Protein of unknown function (DUF493)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AciI CCGC 1 cut(s) 216
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 4 cut(s) 161, 257, 269, 350
AluBI AGCT 2 cut(s) 304, 377
AluI AGCT 2 cut(s) 304, 377
Alw26I GTCTC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 2 cut(s) 341, 370
AvaII GGWCC 2 cut(s) 341, 370
BbvI GCAGC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 341, 370
BmgT120I GGNCC 2 cut(s) 341, 370
BmiI GGNNCC 1 cut(s) 29
BmsI GCATC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 396
BseGI GGATG 2 cut(s) 229, 414
BseMI GCAATG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 396
BssMI GATC 1 cut(s) 22
BssNAI GTATAC 1 cut(s) 382
Bst1107I GTATAC 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 4 cut(s) 55, 77, 105, 391
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 229, 414
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 17
BstZ17I GTATAC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 229, 414
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 341, 370
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 4 cut(s) 88, 239, 304, 377
CviKI_1 RGCY 4 cut(s) 88, 239, 304, 377
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eam1104I CTCTTC 4 cut(s) 55, 77, 105, 391
EarI CTCTTC 4 cut(s) 55, 77, 105, 391
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 341, 370
FaiI YATR 3 cut(s) 242, 324, 382
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 236, 421
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 360
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 406
HinfI GANTC 2 cut(s) 198, 257
HpaII CCGG 1 cut(s) 406
Hpy166II GTNNAC 3 cut(s) 334, 365, 382
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 312
Hpy8I GTNNAC 3 cut(s) 334, 365, 382
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 235, 389
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 80
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 48, 136, 221, 297, 353, 357, 419
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 80
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 4 cut(s) 42, 64, 92, 408
MluCI AATT 2 cut(s) 40, 264
MnlI CCTC 7 cut(s) 65, 80, 86, 188, 212, 277, 308
MspI CCGG 1 cut(s) 406
NdeII GATC 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 2 cut(s) 198, 257
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 341, 370
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 2 cut(s) 341, 370
SetI ASST 4 cut(s) 83, 306, 372, 379
SfaNI GCATC 1 cut(s) 17
SinI GGWCC 2 cut(s) 341, 370
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 40, 264
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 83
TasI AATT 2 cut(s) 40, 264
TfiI GAWTC 2 cut(s) 198, 257
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 123, 127, 156, 425
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 341, 370
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.