Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Forward (+)

23140074 .. 23141827

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1117600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCAGGTTTGTTTGACAAGCAAGCAGATTTGTACTTGGATTCAAGGCCAGCTTATCCCAAAGAATGGTACTCTAAATTGGCAGATCTCACTCCTCACCACTCTCTCGCTTGGGATGTCGGAACCGGCAACGGCCAAGCCGCTATCGGTGTTGCTGAGCACTATAAACAAGTGATTGGAACCGATGTGAGTGAATCCCAGCTGCAGCGTGCAATGCCACATCCACTTGTTCGATATGCCCACACGCCGTTAACCATGACAGACGACGAATTAATAGCCTTGATCGGGGGAGAAAGTTCAGTTGACTTGGTGACTGTGGCTCAAGCTGTGCACTGGTTCGACCTACCAAAATTCTACAGTCTTGTTTCGCGGCTTCTGAAGCCAGGAGGCGTGTTGGCGGTTTGGTGCTACAATCACATCGAAGTTTGTCCCGAATTTGATCCTATTGTGAAGCGACTTGAGGATACAAGCCTTCCCTATTATCATCGTAACATCCAGTACGTGTTTGATGGTTACAAGACGCTTCCTTTTCCTTTTCAGAGCGCTGGTTTCGGATGCGAGGGGAGTCCATTGGCTCTGGACATTCCAAAGAAGTTATCTTTCGAAGGGTTTTTGAAGATGGTACGGTCATGGTCTGCAGTTAATACAGCCAAAGAACAAGGGGTGGATTTGTTGCCCGAAAAGTTGGTTAAAGAGTTTGAGGTTGCTTGGGGCGGCACCAAATTAGTCAGGTCTGTCAGCTACAAGGCTTTTATGCTCGCCGGAAAAGTTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

260

Amino Acids

28.91

Weight (kDa)

6.24

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 133	1.2e-11	Methyltransferase domain
Methyltransf_25	PF13649	39 - 130	1.8e-10	Methyltransferase domain
Methyltransf_12	PF08242	39 - 132	2.6e-10	Methyltransferase domain
Methyltransf_31	PF13847	39 - 138	1.3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	716
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccII	CGCG	1 cut(s)	370
AciI	CCGC	4 cut(s)	141, 370, 398, 714
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	350, 434
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	4 cut(s)	35, 71, 500, 624
AfeI	AGCGCT	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	66, 285
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	45, 616
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	4 cut(s)	53, 202, 326, 741
AluI	AGCT	4 cut(s)	53, 202, 326, 741
Alw21I	GWGCWC	2 cut(s)	162, 333
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	434
Aor51HI	AGCGCT	1 cut(s)	544
AoxI	GGCC	2 cut(s)	47, 133
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	202, 205
ApoI	RAATTY	2 cut(s)	350, 434
AseI	ATTAAT	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	89, 322
AsuII	TTCGAA	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	716
Bbv12I	GWGCWC	2 cut(s)	162, 333
BbvI	GCAGC	2 cut(s)	189, 217
BccI	CCATC	2 cut(s)	503, 613
BceAI	ACGGC	2 cut(s)	148, 232
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	457
BfmI	CTRYAG	3 cut(s)	203, 355, 636
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	457
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	5 cut(s)	141, 203, 206, 371, 715
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	5 cut(s)	142, 204, 207, 372, 716
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	3 cut(s)	124, 181, 718
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	603
BpuEI	CTTGAG	2 cut(s)	306, 479
BsaAI	YACGTR	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 285
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	338, 496
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	384
BseGI	GGATG	4 cut(s)	121, 220, 492, 560
BseLI	CCNNNNNNNGG	2 cut(s)	66, 285
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	338, 496
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	189, 217
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	49, 135
BshNI	GGYRCC	1 cut(s)	716
BsiHKAI	GWGCWC	2 cut(s)	162, 333
BsiSI	CCGG	2 cut(s)	126, 762
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	66, 285
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	49, 135
Bsp119I	TTCGAA	1 cut(s)	603
Bsp1286I	GDGCHC	2 cut(s)	162, 333
Bsp143I	GATC	3 cut(s)	85, 282, 439
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	4 cut(s)	141, 370, 398, 714
BspANI	GGCC	2 cut(s)	49, 135
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	124, 181, 718
BspMAI	CTGCAG	2 cut(s)	207, 640
BspPI	GGATC	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	603
BspT107I	GGYRCC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	338, 496
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	3 cut(s)	85, 282, 439
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	316, 359, 627
BstBAI	YACGTR	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	4 cut(s)	24, 51, 210, 759
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	4 cut(s)	121, 220, 492, 560
BstFNI	CGCG	1 cut(s)	370
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	88, 285, 442
BstMBI	GATC	3 cut(s)	85, 282, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 379
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	3 cut(s)	203, 355, 636
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	189, 217
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	49, 135
BtsCI	GGATG	4 cut(s)	121, 220, 492, 560
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	4 cut(s)	24, 51, 210, 759
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	125
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	4 cut(s)	34, 70, 499, 623
CviAII	CATG	2 cut(s)	256, 630
CviQI	GTAC	4 cut(s)	34, 70, 499, 623
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	87, 284, 441
DpnII	GATC	3 cut(s)	85, 282, 439
EaeI	YGGCCR	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	259, 633
FaiI	YATR	5 cut(s)	165, 237, 257, 631, 755
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	2 cut(s)	255, 629
Fnu4HI	GCNGC	5 cut(s)	141, 203, 206, 371, 715
FokI	GGATG	4 cut(s)	128, 207, 479, 567
Fsp4HI	GCNGC	5 cut(s)	141, 203, 206, 371, 715
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	5 cut(s)	141, 203, 206, 371, 715
GsaI	CCCAGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	49, 135
HapII	CCGG	2 cut(s)	126, 762
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	259, 633
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	2 cut(s)	252, 304
HindII	GTYRAC	2 cut(s)	252, 304
HinfI	GANTC	3 cut(s)	41, 194, 565
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	126, 762
HphI	GGTGA	2 cut(s)	89, 322
Hpy166II	GTNNAC	3 cut(s)	252, 304, 331
Hpy188I	TCNGA	4 cut(s)	122, 378, 540, 554
Hpy188III	TCNNGA	2 cut(s)	431, 578
Hpy8I	GTNNAC	3 cut(s)	252, 304, 331
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	482, 599
HpyCH4III	ACNGT	3 cut(s)	316, 359, 627
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	205, 212, 331, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 379
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	259, 633
HspAI	GCGC	1 cut(s)	543
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	85, 282, 439
Lsp1109I	GCAGC	2 cut(s)	189, 217
LweI	GCATC	1 cut(s)	545
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	3 cut(s)	310, 488, 512
MalI	GATC	3 cut(s)	87, 284, 441
MboI	GATC	3 cut(s)	85, 282, 439
MboII	GAAGA	1 cut(s)	628
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	162, 333
MluCI	AATT	5 cut(s)	77, 269, 350, 434, 722
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	105, 380, 454, 553, 694
MseI	TTAA	5 cut(s)	251, 272, 642, 690, 771
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	2 cut(s)	126, 762
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	214, 379
NdeII	GATC	3 cut(s)	85, 282, 439
NlaIII	CATG	2 cut(s)	259, 633
NlaIV	GGNNCC	3 cut(s)	124, 181, 718
NmuCI	GTSAC	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	41, 194
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	5 cut(s)	142, 204, 207, 372, 716
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
Ppu21I	YACGTR	1 cut(s)	502
PshBI	ATTAAT	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	124, 181, 718
PstI	CTGCAG	2 cut(s)	207, 640
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	4 cut(s)	35, 71, 500, 624
RsaNI	GTAC	4 cut(s)	34, 70, 499, 623
SaqAI	TTAA	5 cut(s)	251, 272, 642, 690, 771
SatI	GCNGC	5 cut(s)	141, 203, 206, 371, 715
Sau3AI	GATC	3 cut(s)	85, 282, 439
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	162, 333
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	3 cut(s)	203, 355, 636
SfuI	TTCGAA	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	321, 458
SmoI	CTYRAG	2 cut(s)	321, 458
Sse9I	AATT	5 cut(s)	77, 269, 350, 434, 722
SsiI	CCGC	4 cut(s)	141, 370, 398, 714
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	316, 359, 627
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	232, 339, 420, 603
TasI	AATT	5 cut(s)	77, 269, 350, 434, 722
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	3 cut(s)	143, 373, 717
TfiI	GAWTC	2 cut(s)	41, 194
Tru1I	TTAA	5 cut(s)	251, 272, 642, 690, 771
Tru9I	TTAA	5 cut(s)	251, 272, 642, 690, 771
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	202, 205
Tsp45I	GTSAC	1 cut(s)	310
TspRI	CASTG	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	272
XapI	RAATTY	2 cut(s)	350, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.