Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001059

Physical Location & Seq

Genomic Coordinates Reverse (-)

13560608 .. 13570213

Gene Structure 9606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG173100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGGTCTATTCGACAAGCAAGCAGAGGTGTACTTGGAAGCTCGGCCAACATATCCCAAGGAATGGTATTTGAAGCTGGCCGGTCTCACCCCCGAACACTCTTTAGCTTGGGATGTTGGAACTGGAAATGGCCAAGCTGCTTATAGTCTTTCAGAGCATTACGAGCAAGTAGTGGGAAGCGACATCAGTGAAGAACAATTGAAACATGCCATCCAACATCCTCGAATTCGATACATTCATACTCCAACATCAATCTCAGAGGATGAAATGGTCAACTTAATAGCCGGTGGTCATGAAAATTCAGTGGACTTGGTTACAGTGGCGGAAGCTGTTCACTGGTTTGATCTTCCTCATTTCTATTCACTCGTCAGACGCCTTCTGCGCAAACCAGGAGGCGTAATCGCAGTTTGGGGCTACAACGACATGGTAGTAAGCCCCGATTTTGATCTTTTAATGAAGCGTTACCGCGAAAAGATGTTACCATATTATGACCCGAAATCAAGCTACTTATGGGAGGGTTATAGGACACTTCCATTTCCATTTGAGAGTGTTGGATTAGGTCGTGAAGGAGAGCCAATGGCACTTGAAATACATAAGGAACTTTCATTTCAGGGGCTTGTGAGGCTTCATAGGTCTTCCTCTGCAGTCACTACGGCTAAAGACAAGGGTGTGGATTTGTTGTCTGAAGAGGTGATTGAAGAGATTCAAGGAGTTTGGGGTGGGCCTGATCTGGTTAGATCTGTTACGTACAAGGCTTTTATGCTTGCTGGCAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

260

Amino Acids

29.43

Weight (kDa)

5.48

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	39 - 136	2.2e-10	Methyltransferase domain
Methyltransf_25	PF13649	39 - 132	2e-09	Methyltransferase domain
Methyltransf_12	PF08242	39 - 134	3.1e-07	Methyltransferase domain
Methyltransf_31	PF13847	39 - 135	1.1e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22530 AT4G22530 AT5G10830
fragaria_vesca	FvH4_5g02050 FvH4_5g34810 FvH4_5g34810
malus_domestica	MD01G1117600.v1.1 MD01G1117900.v1.1 MD07G1186100.v1.1 MD08G1242500.v1.1 MD08G1242800.v1.1
prunus_persica	Prupe.1G580000_v2.0.a1 Prupe.1G580100_v2.0.a1 Prupe.4G160700_v2.0.a1
pyrus_communis	pycom01g14530 pycom08g21040 pycom15g38510
rosa_chinensis	RchiOBHm_Chr1g0334721 RchiOBHm_Chr7g0198261 RchiOBHm_Chr7g0235451 RchiOBHm_Chr7g0235491
rosa_laevigata	RLG00000001155 RLG00000001156 RLG00000003879 RLG00000029427 RLG00000029428 RLG00000029430
rosa_multiflora	Rmu_co8155022.1_g000001 Rmu_co8423201.1_g000001 Rmu_sc0000574.1_g000002 Rmu_sc0002892.1_g000013 Rmu_sc0002892.1_g000015 Rmu_sc0004498.1_g000005 Rmu_sc0004498.1_g000007 Rmu_sc0006031.1_g000022
rosa_roxburghii	Rroxscaffold_3G00225960 Rroxscaffold_3G00225980 Rroxscaffold_4G00316640
rosa_rugosa	Rorug01G0115200 Rorug01G0115300 Rorug07G0046400 Rorug07G0290900 Rorug07G0291000 Rorug07G0291100 Rorug07G0291200
rosa_samantha	Rh1BG107500 Rh1CG132300 Rh1DG144400 Rh7AG169900 Rh7AG446300 Rh7BG173100 Rh7BG418000 Rh7DG172300 Rh7DG434700 Rh7DG434800
rosa_wichuraiana	Rw1G011580 Rw7G014880 Rw7G037030 Rw7G037040 Rw7G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccII	CGCG	1 cut(s)	471
AciI	CCGC	2 cut(s)	326, 469
AcoI	YGGCCR	3 cut(s)	47, 81, 133
AcsI	RAATTY	2 cut(s)	228, 301
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	2 cut(s)	35, 752
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	5 cut(s)	76, 205, 590, 701, 710
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	6 cut(s)	44, 79, 110, 140, 332, 507
AluI	AGCT	6 cut(s)	44, 79, 110, 140, 332, 507
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	4 cut(s)	47, 81, 133, 725
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	228, 301
Asp700I	GAANNNNTTC	2 cut(s)	333, 705
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	725
AsuHPI	GGTGA	2 cut(s)	82, 706
BalI	TGGCCA	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	672
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	645
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	725
BmrFI	CCNGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	2 cut(s)	83, 287
Bse1I	ACTGG	2 cut(s)	130, 344
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	4 cut(s)	121, 213, 220, 271
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	130, 344
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	49, 83, 135, 727
BsiSI	CCGG	2 cut(s)	84, 288
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	49, 83, 135, 727
Bso31I	GGTCTC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	346, 448, 730, 740
BspACI	CCGC	2 cut(s)	326, 469
BspANI	GGCC	4 cut(s)	49, 83, 135, 727
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	83, 287
BsrI	ACTGG	2 cut(s)	130, 344
BssAI	RCCGGY	2 cut(s)	83, 287
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	4 cut(s)	346, 448, 730, 740
BssNI	GRCGYC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	684, 696
BstACI	GRCGYC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	4 cut(s)	24, 81, 768, 772
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	121, 213, 220, 271
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	4 cut(s)	349, 451, 733, 743
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	4 cut(s)	346, 448, 730, 740
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 384, 625
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	645
BstSNI	TACGTA	1 cut(s)	750
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
BsuRI	GGCC	4 cut(s)	49, 83, 135, 727
BtsCI	GGATG	4 cut(s)	121, 213, 220, 271
BtsIMutI	CAGTG	4 cut(s)	196, 312, 327, 337
Cac8I	GCNNGC	4 cut(s)	24, 81, 768, 772
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	2 cut(s)	83, 287
Cfr13I	GGNCC	1 cut(s)	725
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	34, 751
CviAII	CATG	3 cut(s)	209, 296, 427
CviQI	GTAC	2 cut(s)	34, 751
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	4 cut(s)	348, 450, 732, 742
DpnII	GATC	4 cut(s)	346, 448, 730, 740
EaeI	YGGCCR	3 cut(s)	47, 81, 133
Eam1104I	CTCTTC	2 cut(s)	684, 696
EarI	CTCTTC	2 cut(s)	684, 696
EciI	GGCGGA	1 cut(s)	341
Eco105I	TACGTA	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	708
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	3 cut(s)	212, 299, 430
FatI	CATG	3 cut(s)	208, 295, 426
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	4 cut(s)	128, 200, 207, 278
Fsp4HI	GCNGC	1 cut(s)	141
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	49, 83, 135, 727
HapII	CCGG	2 cut(s)	84, 288
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	3 cut(s)	212, 299, 430
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	706
HpaII	CCGG	2 cut(s)	84, 288
HphI	GGTGA	2 cut(s)	82, 706
Hpy166II	GTNNAC	4 cut(s)	34, 277, 310, 337
Hpy188I	TCNGA	4 cut(s)	157, 262, 374, 688
Hpy188III	TCNNGA	2 cut(s)	296, 566
Hpy8I	GTNNAC	4 cut(s)	34, 277, 310, 337
HpyAV	CCTTC	2 cut(s)	389, 563
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	1 cut(s)	647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 384, 625
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	749
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	3 cut(s)	212, 299, 430
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	346, 448, 730, 740
Lsp1109I	GCAGC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	5 cut(s)	316, 464, 480, 649, 745
MalI	GATC	4 cut(s)	348, 450, 732, 742
MboI	GATC	4 cut(s)	346, 448, 730, 740
MboII	GAAGA	5 cut(s)	206, 341, 630, 701, 713
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	200, 228, 301
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	4 cut(s)	100, 241, 272, 535
MnlI	CCTC	9 cut(s)	22, 234, 256, 363, 389, 511, 618, 652, 685
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	2 cut(s)	333, 705
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	281, 455
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	2 cut(s)	84, 288
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	3 cut(s)	166, 384, 625
NdeII	GATC	4 cut(s)	346, 448, 730, 740
NlaIII	CATG	3 cut(s)	212, 299, 430
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	649
NsbI	TGCGCA	1 cut(s)	386
NspI	RCATGY	1 cut(s)	212
PagI	TCATGA	1 cut(s)	295
PdmI	GAANNNNTTC	2 cut(s)	333, 705
PfeI	GAWTC	1 cut(s)	706
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	740
RsaI	GTAC	2 cut(s)	35, 752
RsaNI	GTAC	2 cut(s)	34, 751
SaqAI	TTAA	2 cut(s)	281, 455
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	346, 448, 730, 740
Sau96I	GGNCC	1 cut(s)	725
ScrFI	CCNGG	1 cut(s)	393
SfcI	CTRYAG	1 cut(s)	645
SnaBI	TACGTA	1 cut(s)	750
Sse9I	AATT	3 cut(s)	200, 228, 301
SsiI	CCGC	2 cut(s)	326, 469
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	3 cut(s)	15, 226, 232
TasI	AATT	3 cut(s)	200, 228, 301
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	2 cut(s)	281, 455
Tru9I	TTAA	2 cut(s)	281, 455
TscAI	CASTG	4 cut(s)	196, 312, 327, 344
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	6 cut(s)	230, 282, 312, 473, 597, 620
TspRI	CASTG	4 cut(s)	196, 312, 327, 344
Van91I	CCANNNNNTGG	1 cut(s)	66
XapI	RAATTY	2 cut(s)	228, 301
XceI	RCATGY	1 cut(s)	212
XmnI	GAANNNNTTC	2 cut(s)	333, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.