Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000361

Physical Location & Seq

Genomic Coordinates Reverse (-)

6975029 .. 6976036

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAGATGATAATCCAAATTTTCTTCATCATCTCCCTCATTTCAACCATCTCTTTTGCCTCTGTTCAAGACTTTTGTGTAGCTGACCCAAAGGGTCCTCAAAGCCCATCAGGTTACTCTTGCAAGAACCCTGACCAAGTCACCGAAAATGACTTTGCATTTACCGGCCTCGGCACAGCTGGAAACACTTCCAACATCATTAAAGCCGCAGTGACTCCAGCCTTTGCTCCTGCTTACGCAGGCATCAATGGCCTTGGCGTATCTCTGGCTCGTCTTGACTTAGCCGGTGGTGGTGTCATCCCTCTCCACACTCATCCTGGTGCTTCTGAGGTCCTTGTAGTCATTCAAGGCACCATTTGCGCCGGATTTATCTCCTCCGCCAACAAAGTTTACTTGAAGACTCTCAACAGAGGAGATTCTATGGTGTTTCCTCAAGGACTTCTTCATTTTCAGCTAAACTCTGGGAAAGGCCCTGCCTTGGCCTTTGTCGCATTCGGAAGCTCCTCCCCAGGGCTCCAAATTCTACCATTTGCTCTGTTTGCAAACGATTTGCCTTCAGAACTTGTTGAAGCCACAACGTTCCTTAGCGATGCAGAAGTTAAGAAGCTTAAGGGTGTGCTTGGGGGAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009505 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031012 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044464 GO:0048046 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

211

Amino Acids

21.84

Weight (kDa)

6.26

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	56 - 201	5.6e-37	Cupin
Cupin_2	PF07883	93 - 163	2.2e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20630
fragaria_vesca	FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica	MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica	Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis	pycom02g07170 pycom15g19190
rosa_chinensis	RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata	RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora	Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa	Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha	Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana	Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	2 cut(s)	207, 378
AclI	AACGTT	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	18, 519
AcuI	CTGAAG	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	478, 510
AflII	CTTAAG	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	45, 68, 347, 397, 569
AjnI	CCWGG	2 cut(s)	316, 508
AluBI	AGCT	5 cut(s)	83, 179, 454, 501, 607
AluI	AGCT	5 cut(s)	83, 179, 454, 501, 607
AoxI	GGCC	4 cut(s)	166, 250, 469, 480
ApoI	RAATTY	2 cut(s)	18, 519
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	95, 331, 470
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	95, 331
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	404
BccI	CCATC	2 cut(s)	56, 115
BciT130I	CCWGG	2 cut(s)	318, 510
BfrI	CTTAAG	1 cut(s)	608
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	318, 510
Bme18I	GGWCC	2 cut(s)	95, 331
BmgT120I	GGNCC	3 cut(s)	95, 331, 470
BmiI	GGNNCC	3 cut(s)	96, 352, 515
BmrFI	CCNGG	2 cut(s)	318, 510
BmsI	GCATC	2 cut(s)	252, 580
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	5 cut(s)	169, 253, 477, 508, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 510
Bse118I	RCCGGY	2 cut(s)	164, 284
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	318, 510
BseDI	CCNNGG	5 cut(s)	169, 253, 477, 508, 509
BseGI	GGATG	2 cut(s)	297, 313
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	478, 510
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	3 cut(s)	364, 426, 493
BshFI	GGCC	4 cut(s)	168, 252, 471, 482
BshNI	GGYRCC	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	165, 285, 363
BslI	CCNNNNNNNGG	2 cut(s)	478, 510
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	4 cut(s)	168, 252, 471, 482
Bsp1286I	GDGCHC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	207, 378
BspANI	GGCC	4 cut(s)	168, 252, 471, 482
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	96, 352, 515
BspT107I	GGYRCC	1 cut(s)	350
BspTI	CTTAAG	1 cut(s)	608
BsrFI	RCCGGY	2 cut(s)	164, 284
BssAI	RCCGGY	2 cut(s)	164, 284
BssECI	CCNNGG	5 cut(s)	169, 253, 477, 508, 509
BssT1I	CCWWGG	2 cut(s)	253, 477
Bst2UI	CCWGG	2 cut(s)	318, 510
BstAFI	CTTAAG	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	280, 327, 584
BstF5I	GGATG	2 cut(s)	297, 313
BstHHI	GCGC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 357, 488, 539
BstNI	CCWGG	2 cut(s)	318, 510
BstSCI	CCNGG	2 cut(s)	316, 508
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	4 cut(s)	168, 252, 471, 482
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	297, 313
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	2 cut(s)	164, 284
Cfr13I	GGNCC	3 cut(s)	95, 331, 470
DdeI	CTNAG	3 cut(s)	280, 327, 584
EciI	GGCGGA	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	253, 477
Eco24I	GRGCYC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	95, 331
Eco57I	CTGAAG	1 cut(s)	540
EcoO109I	RGGNCCY	3 cut(s)	95, 331, 470
EcoRII	CCWGG	2 cut(s)	316, 508
EcoT14I	CCWWGG	2 cut(s)	253, 477
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	253, 477
FaiI	YATR	1 cut(s)	422
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	284, 300
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	168, 252, 471, 482
HapII	CCGG	3 cut(s)	165, 285, 363
HhaI	GCGC	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	3 cut(s)	214, 400, 416
HpaII	CCGG	3 cut(s)	165, 285, 363
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	328, 497, 559
Hpy188III	TCNNGA	2 cut(s)	68, 275
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	564
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	4 cut(s)	123, 158, 542, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 357, 488, 539
HpyF3I	CTNAG	3 cut(s)	280, 327, 584
HpySE526I	ACGT	1 cut(s)	578
HspAI	GCGC	1 cut(s)	360
LmnI	GCTCC	3 cut(s)	232, 506, 519
LweI	GCATC	2 cut(s)	252, 580
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	3 cut(s)	113, 139, 211
MboII	GAAGA	4 cut(s)	16, 16, 409, 434
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	3 cut(s)	18, 519, 631
MlyI	GAGTC	2 cut(s)	208, 394
MmeI	TCCRAC	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	4 cut(s)	201, 600, 609, 634
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	3 cut(s)	165, 285, 363
MspR9I	CCNGG	2 cut(s)	318, 510
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	2 cut(s)	318, 510
MwoI	GCNNNNNNNGC	4 cut(s)	249, 357, 488, 539
NlaIV	GGNNCC	3 cut(s)	96, 352, 515
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	139, 211
PasI	CCCWGGG	1 cut(s)	509
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	208, 394
PpsI	GAGTC	2 cut(s)	208, 394
PpuMI	RGGWCCY	2 cut(s)	95, 331
Psp1406I	AACGTT	1 cut(s)	578
Psp5II	RGGWCCY	2 cut(s)	95, 331
Psp6I	CCWGG	2 cut(s)	316, 508
PspGI	CCWGG	2 cut(s)	316, 508
PspN4I	GGNNCC	3 cut(s)	96, 352, 515
PspPI	GGNCC	3 cut(s)	95, 331, 470
PspPPI	RGGWCCY	2 cut(s)	95, 331
PsyI	GACNNNGTC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	4 cut(s)	201, 600, 609, 634
SatI	GCNGC	1 cut(s)	207
Sau96I	GGNCC	3 cut(s)	95, 331, 470
SchI	GAGTC	2 cut(s)	208, 394
ScrFI	CCNGG	2 cut(s)	318, 510
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	8 cut(s)	85, 115, 181, 333, 456, 503, 581, 609
SfaNI	GCATC	2 cut(s)	252, 580
SinI	GGWCC	2 cut(s)	95, 331
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	432, 608
SmoI	CTYRAG	2 cut(s)	432, 608
Sse9I	AATT	3 cut(s)	18, 519, 631
SsiI	CCGC	2 cut(s)	207, 378
StyD4I	CCNGG	2 cut(s)	316, 508
StyI	CCWWGG	2 cut(s)	253, 477
TaiI	ACGT	1 cut(s)	581
TasI	AATT	3 cut(s)	18, 519, 631
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	4 cut(s)	201, 600, 609, 634
Tru9I	TTAA	4 cut(s)	201, 600, 609, 634
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	139, 211
Tsp45I	GTSAC	2 cut(s)	139, 211
TspDTI	ATGAA	3 cut(s)	16, 17, 434
TspRI	CASTG	1 cut(s)	216
Tth111I	GACNNNGTC	1 cut(s)	137
Vha464I	CTTAAG	1 cut(s)	608
VpaK11BI	GGWCC	2 cut(s)	95, 331
XapI	RAATTY	2 cut(s)	18, 519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.