Rroxscaffold_2G00134240

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000361
Physical Location & Seq
Reverse (-)
71715876 .. 71716508
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134240.1

Sequence Viewer

Length: 633 bp
ATGATGATTTCCTCTATCTGCTTCATATTTTTTCTCATTCTCTCCTCTTCCTACGCTGCTGTCCAAGATTTCTGTGTTGCAGACTACACAGCTCCTCCAAGCCCTGCAGGATACTCTTGCAAGAACCCCTCAGATGTTAAGGTGGACGATTTCGTGTACTCTGGTCTAGGAGTTCCTGGTAACAACTTAAAATTAAACAAAGTCCGACTTAAAGCTGCATTTGTTGCTCAATTTCCTGGTCTAAATGGCCTTGGTATTTCGCTGGCTCGTGCGGATTTGGAGGTTGGTGGAGCTGTTCCGATGCACACTCACCGCGGAGCTTCAGAGGTTATACTTGTTGCGGAAGGGAAAGTTATAGCTGGGTTCATCGCCTCGGATAACAAAGCTTATGTAAAAAATCTGAAGAAAGGTGATATTATGGTTTTCCCACAAGGTTTGCTACACTTCCAAGTAAATGCAGGTGATACTCGAGCCCTTGTATTTGCTAGCTTCAGCAGTGACGACCCAGGTGTGCAGAGTCTGGAGACAGCACTGTTTCAAAACGATTTTCGTACTGAATTGATAGCACAGACTACTCTCCTTGACAGTGCTGAGATTAAGAAACTTAAGGGTCTTCTTGGTGGTACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

210

Amino Acids

22.34

Weight (kDa)

6.28

Isoelectric Point (pI)

25.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 55 - 199 4e-34 Cupin
Cupin_2 PF07883 91 - 161 4.9e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 449
Acc36I ACCTGC 1 cut(s) 449
AccII CGCG 1 cut(s) 315
AciI CCGC 4 cut(s) 272, 313, 315, 341
AcuI CTGAAG 3 cut(s) 306, 422, 475
AfaI GTAC 3 cut(s) 158, 553, 625
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 1 cut(s) 539
AjnI CCWGG 3 cut(s) 175, 235, 505
AluBI AGCT 7 cut(s) 92, 215, 293, 320, 359, 386, 489
AluI AGCT 7 cut(s) 92, 215, 293, 320, 359, 386, 489
Alw26I GTCTC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 56, 215
AsuHPI GGTGA 3 cut(s) 302, 422, 473
AsuNHI GCTAGC 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 468
BanII GRGCYC 1 cut(s) 475
BauI CACGAG 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 43, 202
BciT130I CCWGG 3 cut(s) 177, 237, 507
BciVI GTATCC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 2 cut(s) 167, 486
BfmI CTRYAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 605
BfuAI ACCTGC 1 cut(s) 449
BfuI GTATCC 1 cut(s) 104
BisI GCNGC 2 cut(s) 57, 216
BlsI GCNGC 2 cut(s) 58, 217
Bme1390I CCNGG 3 cut(s) 177, 237, 507
BmeT110I CYCGRG 1 cut(s) 468
BmrFI CCNGG 3 cut(s) 177, 237, 507
BmsI GCATC 1 cut(s) 291
BmtI GCTAGC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 250, 313, 372, 505
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
BseBI CCWGG 3 cut(s) 177, 237, 507
BseDI CCNNGG 4 cut(s) 250, 313, 372, 505
BseMII CTCAG 2 cut(s) 144, 582
BseRI GAGGAG 2 cut(s) 34, 84
BseXI GCAGC 2 cut(s) 43, 202
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 475
BspACI CCGC 4 cut(s) 272, 313, 315, 341
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 2 cut(s) 143, 583
BspFNI CGCG 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 449
BspOI GCTAGC 1 cut(s) 489
BspTI CTTAAG 1 cut(s) 605
BssECI CCNNGG 4 cut(s) 250, 313, 372, 505
BssSI CACGAG 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 177, 237, 507
Bst4CI ACNGT 2 cut(s) 534, 587
Bst6I CTCTTC 1 cut(s) 52
BstAFI CTTAAG 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 264, 487
BstDEI CTNAG 2 cut(s) 130, 591
BstDSI CCRYGG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 518
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 3 cut(s) 177, 237, 507
BstSCI CCNGG 3 cut(s) 175, 235, 505
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 43, 202
BstV2I GAAGAC 1 cut(s) 605
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 3 cut(s) 502, 530, 592
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 264, 487
CaiI CAGNNNCTG 1 cut(s) 520
Cfr42I CCGCGG 1 cut(s) 316
Csp6I GTAC 3 cut(s) 157, 552, 624
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviQI GTAC 3 cut(s) 157, 552, 624
DdeI CTNAG 2 cut(s) 130, 591
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 475
Eco57I CTGAAG 3 cut(s) 306, 422, 475
Eco88I CYCGRG 1 cut(s) 468
EcoRII CCWGG 3 cut(s) 175, 235, 505
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 250
FaiI YATR 5 cut(s) 26, 332, 356, 390, 419
FalI AAGNNNNNCTT 2 cut(s) 192, 224
Fnu4HI GCNGC 2 cut(s) 57, 216
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 57, 216
FspBI CTAG 2 cut(s) 167, 486
GluI GCNGC 2 cut(s) 57, 216
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 1 cut(s) 517
HphI GGTGA 3 cut(s) 302, 422, 473
Hpy166II GTNNAC 2 cut(s) 145, 157
Hpy188I TCNGA 6 cut(s) 133, 206, 300, 325, 376, 402
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 2 cut(s) 145, 157
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 2 cut(s) 534, 587
HpyCH4V TGCA 7 cut(s) 80, 107, 120, 218, 304, 458, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 130, 591
KspI CCGCGG 1 cut(s) 316
LmnI GCTCC 3 cut(s) 97, 290, 317
Lsp1109I GCAGC 2 cut(s) 43, 202
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 167, 486
MaeIII GTNAC 2 cut(s) 179, 497
MboII GAAGA 3 cut(s) 39, 415, 605
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 4 cut(s) 191, 230, 557, 628
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 7 cut(s) 22, 55, 105, 139, 274, 319, 382
MseI TTAA 6 cut(s) 138, 188, 194, 210, 597, 606
MspA1I CMGCKG 1 cut(s) 315
MspCI CTTAAG 1 cut(s) 605
MspR9I CCNGG 3 cut(s) 177, 237, 507
MvaI CCWGG 3 cut(s) 177, 237, 507
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 224
NheI GCTAGC 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 468
PaqCI CACCTGC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 58, 217
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
Psp6I CCWGG 3 cut(s) 175, 235, 505
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 3 cut(s) 175, 235, 505
PspXI VCTCGAGB 1 cut(s) 468
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 520
RsaI GTAC 3 cut(s) 158, 553, 625
RsaNI GTAC 3 cut(s) 157, 552, 624
SacII CCGCGG 1 cut(s) 316
SaqAI TTAA 6 cut(s) 138, 188, 194, 210, 597, 606
SatI GCNGC 2 cut(s) 57, 216
SbfI CCTGCAGG 1 cut(s) 109
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 3 cut(s) 177, 237, 507
SdaI CCTGCAGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 105
Sfr274I CTCGAG 1 cut(s) 468
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 468, 605
SmoI CTYRAG 2 cut(s) 468, 605
Sse8387I CCTGCAGG 1 cut(s) 109
Sse9I AATT 4 cut(s) 191, 230, 557, 628
SsiI CCGC 4 cut(s) 272, 313, 315, 341
SspMI CTAG 2 cut(s) 167, 486
StyD4I CCNGG 3 cut(s) 175, 235, 505
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 534, 587
TaqI TCGA 1 cut(s) 469
TasI AATT 4 cut(s) 191, 230, 557, 628
TatI WGTACW 1 cut(s) 156
Tru1I TTAA 6 cut(s) 138, 188, 194, 210, 597, 606
Tru9I TTAA 6 cut(s) 138, 188, 194, 210, 597, 606
TscAI CASTG 3 cut(s) 502, 537, 592
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 2 cut(s) 56, 215
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 13, 355
TspRI CASTG 3 cut(s) 502, 537, 592
Vha464I CTTAAG 1 cut(s) 605
XhoI CTCGAG 1 cut(s) 468
XspI CTAG 2 cut(s) 167, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.