pycom02g07170

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000361
Physical Location & Seq
Forward (+)
5033911 .. 5034540
630 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07170.1

Sequence Viewer

Length: 630 bp
ATGATTTTCCCTATCTTCTTCACATTTTCTCTCCTCCTCTCCTCCTCCCTTGCTTCCGTGCAAGACTTCTGCGTCGCAAACTACAAAGCTCCGGAGGGCCCTGCTGGCTACTCTTGCAAAAAGCCTGCTAAAGTTACGGTAGATGATTTCGTGTACTCTGGCCTAGGCATTCCTGGCAACACCACGAATATCATCAAAGCTGCAGTCACCCCTGCTTTTGCTGCTCAATTTCCTGGTGTGAATGGCCTCGGCATTTCACTCGCACGCCTAGACCTAGCTGTGGGTGGAGTCATCCCATTTCACACTCACCCCGGGGCTTCTGAAGTCCTACTTGTTGCTCACGGAACAATAATTGCCGGGTTTGTTTCCTCAGCTAACACGGTTTATCTGAAAACTCTTAAAAAAGGTGACATTATGGTGTTCCCTCAAGGTCTACTGCACTTCCAAGTGAATGGAGATAAAACTCCAGCCCTTGCATTCGTTAGCTTCAGTAGTCCAAGCCCCGGTCTGCAGATTCTGGACTTTGCACTGTTCCAAAACGACTTACCTACTGAATTGATAGCGCAGACTACCTTCCTCGACGCTGCGCAGATAAAGAAGCTTAAGGGTGTTCTTGGTGGTACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

210

Amino Acids

21.9

Weight (kDa)

7.78

Isoelectric Point (pI)

23.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 198 7.5e-38 Cupin
Cupin_2 PF07883 90 - 161 5e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
Acc16I TGCGCA 1 cut(s) 588
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 433
AccIII TCCGGA 1 cut(s) 91
AcuI CTGAAG 2 cut(s) 342, 472
AfaI GTAC 2 cut(s) 155, 622
AfiI CCNNNNNNNGG 2 cut(s) 280, 503
AflII CTTAAG 1 cut(s) 602
AjnI CCWGG 2 cut(s) 172, 232
AluBI AGCT 6 cut(s) 89, 200, 278, 374, 486, 601
AluI AGCT 6 cut(s) 89, 200, 278, 374, 486, 601
AlwNI CAGNNNCTG 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 3 cut(s) 97, 160, 244
ApaI GGGCCC 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 200, 221, 584
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
Asp718I GGTACC 1 cut(s) 620
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 2 cut(s) 565, 589
AspS9I GGNCC 2 cut(s) 97, 98
AsuC2I CCSGG 4 cut(s) 312, 313, 358, 504
AsuHPI GGTGA 3 cut(s) 199, 299, 419
AvaI CYCGRG 1 cut(s) 311
AvrII CCTAGG 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 620
BanII GRGCYC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 3 cut(s) 187, 208, 571
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 2 cut(s) 174, 234
BcnI CCSGG 4 cut(s) 312, 313, 358, 504
BfaI CTAG 3 cut(s) 164, 269, 275
BfmI CTRYAG 2 cut(s) 201, 509
BfrI CTTAAG 1 cut(s) 602
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 3 cut(s) 201, 222, 585
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 3 cut(s) 202, 223, 586
Bme1390I CCNGG 6 cut(s) 174, 234, 312, 313, 358, 504
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 97, 98
BmiI GGNNCC 2 cut(s) 99, 622
BmrFI CCNGG 6 cut(s) 174, 234, 312, 313, 358, 504
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 4 cut(s) 312, 313, 358, 504
BsaJI CCNNGG 6 cut(s) 163, 247, 310, 311, 312, 502
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 503
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 2 cut(s) 174, 234
BseDI CCNNGG 6 cut(s) 163, 247, 310, 311, 312, 502
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 280, 503
BseMII CTCAG 1 cut(s) 384
BseRI GAGGAG 4 cut(s) 23, 26, 31, 34
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 3 cut(s) 187, 208, 571
BsgI GTGCAG 1 cut(s) 422
BshFI GGCC 3 cut(s) 99, 162, 246
BshNI GGYRCC 1 cut(s) 620
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 4 cut(s) 92, 312, 357, 504
BslI CCNNNNNNNGG 2 cut(s) 280, 503
BsmI GAATGC 2 cut(s) 168, 476
BsnI GGCC 3 cut(s) 99, 162, 246
BsoBI CYCGRG 1 cut(s) 311
Bsp120I GGGCCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 91
BspANI GGCC 3 cut(s) 99, 162, 246
BspCNI CTCAG 1 cut(s) 383
BspEI TCCGGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 99, 622
BspMAI CTGCAG 2 cut(s) 205, 513
BspT107I GGYRCC 1 cut(s) 620
BspTI CTTAAG 1 cut(s) 602
BssECI CCNNGG 6 cut(s) 163, 247, 310, 311, 312, 502
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 174, 234
Bst4CI ACNGT 3 cut(s) 139, 382, 531
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 106, 126, 265
BstDEI CTNAG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 291
BstHHI GCGC 2 cut(s) 565, 589
BstMWI GCNNNNNNNGC 4 cut(s) 105, 114, 174, 221
BstNI CCWGG 2 cut(s) 174, 234
BstSCI CCNGG 6 cut(s) 172, 232, 310, 311, 356, 502
BstSFI CTRYAG 2 cut(s) 201, 509
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 3 cut(s) 187, 208, 571
BstXI CCANNNNNNTGG 1 cut(s) 452
BsuRI GGCC 3 cut(s) 99, 162, 246
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 527
Cac8I GCNNGC 3 cut(s) 106, 126, 265
CaiI CAGNNNCTG 1 cut(s) 517
CfoI GCGC 2 cut(s) 565, 589
Cfr13I GGNCC 2 cut(s) 97, 98
Cfr9I CCCGGG 1 cut(s) 311
CseI GACGC 2 cut(s) 61, 590
Csp6I GTAC 2 cut(s) 154, 621
CviQI GTAC 2 cut(s) 154, 621
DdeI CTNAG 1 cut(s) 370
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 342, 472
Eco88I CYCGRG 1 cut(s) 311
EcoO109I RGGNCCY 2 cut(s) 97, 98
EcoRII CCWGG 2 cut(s) 172, 232
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 163
FaiI YATR 1 cut(s) 416
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 201, 222, 585
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 201, 222, 585
FspBI CTAG 3 cut(s) 164, 269, 275
FspI TGCGCA 1 cut(s) 588
GlaI GCGC 2 cut(s) 564, 588
GluI GCNGC 3 cut(s) 201, 222, 585
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 3 cut(s) 99, 162, 246
HapII CCGG 4 cut(s) 92, 312, 357, 504
HgaI GACGC 2 cut(s) 61, 590
HhaI GCGC 2 cut(s) 565, 589
Hin6I GCGC 2 cut(s) 563, 587
HinP1I GCGC 2 cut(s) 563, 587
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 2 cut(s) 288, 514
HpaII CCGG 4 cut(s) 92, 312, 357, 504
HphI GGTGA 3 cut(s) 199, 299, 419
Hpy166II GTNNAC 2 cut(s) 154, 434
Hpy188I TCNGA 2 cut(s) 322, 390
Hpy188III TCNNGA 2 cut(s) 92, 518
Hpy8I GTNNAC 2 cut(s) 154, 434
Hpy99I CGWCG 2 cut(s) 77, 584
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 3 cut(s) 139, 382, 531
HpyCH4V TGCA 7 cut(s) 61, 117, 203, 439, 476, 511, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 114, 174, 221
HpyF3I CTNAG 1 cut(s) 370
HspAI GCGC 2 cut(s) 563, 587
Kpn2I TCCGGA 1 cut(s) 91
KpnI GGTACC 1 cut(s) 624
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 3 cut(s) 187, 208, 571
MaeI CTAG 3 cut(s) 164, 269, 275
MaeIII GTNAC 3 cut(s) 133, 205, 407
MboII GAAGA 2 cut(s) 7, 10
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 4 cut(s) 227, 351, 554, 625
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 9 cut(s) 44, 47, 52, 55, 88, 257, 379, 435, 587
MroI TCCGGA 1 cut(s) 91
MseI TTAA 2 cut(s) 399, 603
MslI CAYNNNNRTG 1 cut(s) 416
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 4 cut(s) 92, 312, 357, 504
MspR9I CCNGG 6 cut(s) 174, 234, 312, 313, 358, 504
Mva1269I GAATGC 2 cut(s) 168, 476
MvaI CCWGG 2 cut(s) 174, 234
MwoI GCNNNNNNNGC 4 cut(s) 105, 114, 174, 221
NciI CCSGG 4 cut(s) 312, 313, 358, 504
NlaIV GGNNCC 2 cut(s) 99, 622
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 205, 407
NsbI TGCGCA 1 cut(s) 588
PctI GAATGC 2 cut(s) 168, 476
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 3 cut(s) 202, 223, 586
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 172, 232
PspGI CCWGG 2 cut(s) 172, 232
PspN4I GGNNCC 2 cut(s) 99, 622
PspOMI GGGCCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 97, 98
PstI CTGCAG 2 cut(s) 205, 513
PstNI CAGNNNCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 155, 622
RsaNI GTAC 2 cut(s) 154, 621
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 2 cut(s) 399, 603
SatI GCNGC 3 cut(s) 201, 222, 585
Sau96I GGNCC 2 cut(s) 97, 98
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 6 cut(s) 174, 234, 312, 313, 358, 504
SduI GDGCHC 1 cut(s) 101
SfcI CTRYAG 2 cut(s) 201, 509
SmaI CCCGGG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 426, 602
SmoI CTYRAG 2 cut(s) 426, 602
Sse9I AATT 4 cut(s) 227, 351, 554, 625
SspMI CTAG 3 cut(s) 164, 269, 275
StyD4I CCNGG 6 cut(s) 172, 232, 310, 311, 356, 502
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 139, 382, 531
TaqI TCGA 1 cut(s) 579
TasI AATT 4 cut(s) 227, 351, 554, 625
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 2 cut(s) 399, 603
Tru9I TTAA 2 cut(s) 399, 603
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 2 cut(s) 205, 407
TseI GCWGC 3 cut(s) 200, 221, 584
Tsp45I GTSAC 2 cut(s) 205, 407
TspGWI ACGGA 2 cut(s) 46, 357
TspMI CCCGGG 1 cut(s) 311
TspRI CASTG 1 cut(s) 534
Vha464I CTTAAG 1 cut(s) 602
XmaI CCCGGG 1 cut(s) 311
XmaJI CCTAGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 433
XspI CTAG 3 cut(s) 164, 269, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.