FvH4_1g08541

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000361
Physical Location & Seq
Forward (+)
4530241 .. 4531179
939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08541.t1

Sequence Viewer

Length: 522 bp
ATGATGATTTTCCCTATCTTCTTCATATCTTTCTTCACTTTCTCCTCTTCCTATGCTGCTGTGCAGGACTTCTGCGTAGCAGACTACTCAGCTCCTCAAAGCCCTGCAGGCTACTCTTGCAAAAACCCTTCAAATGTCACAGTAGATGATTTTGTGTACTCTGGCCTAGGAGTTGCCGGTAACACCTCAAATGCAAACAAAATTGGGATCACCCCTGCATTTGCTGGTCAGTTTCCTAGTCTGAATGGCCTTGGCCTTTCTCTGTTACGCGAGGATTTGGAAGTTGGCGGAATTGGCCCGCTCCACTTACACCGCGGCGCTTCAGAAATCATACATGTTGTTAAAGGAACAATAATTGCAGGGTTCATCGCCACGGATAATACAGTCTATACAAAAACTCTGAAGCAGGGTGATATAATGCTTTTTCCTCAAGGTTTGCTCCACTTCCAGAAAAATGTAGGTGATATATACCAGCCCTTGTATTTGCTTGCTTCAGTAGTGAAAACCCGGGCTTGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

174

Amino Acids

18.6

Weight (kDa)

6.88

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 55 - 155 3e-24 Cupin
Cupin_2 PF07883 91 - 155 6e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 301
AccII CGCG 2 cut(s) 270, 315
AciI CCGC 4 cut(s) 288, 299, 313, 315
AclWI GGATC 1 cut(s) 215
AcuI CTGAAG 3 cut(s) 306, 422, 477
AfaI GTAC 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 1 cut(s) 132
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 4 cut(s) 163, 247, 253, 295
ApeKI GCWGC 1 cut(s) 56
AspA2I CCTAGG 1 cut(s) 166
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 2 cut(s) 508, 509
AsuHPI GGTGA 3 cut(s) 202, 422, 473
AvaI CYCGRG 1 cut(s) 507
AvrII CCTAGG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 43
BcnI CCSGG 2 cut(s) 508, 509
BfaI CTAG 2 cut(s) 167, 237
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 321
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 2 cut(s) 57, 316
BlnI CCTAGG 1 cut(s) 166
BlsI GCNGC 2 cut(s) 58, 317
Bme1390I CCNGG 2 cut(s) 508, 509
BmeT110I CYCGRG 1 cut(s) 507
BmgT120I GGNCC 1 cut(s) 296
BmrFI CCNGG 2 cut(s) 508, 509
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 2 cut(s) 508, 509
BsaJI CCNNGG 5 cut(s) 166, 250, 313, 372, 507
Bse118I RCCGGY 1 cut(s) 176
BseDI CCNNGG 5 cut(s) 166, 250, 313, 372, 507
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 34, 84
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 2 cut(s) 270, 315
BshFI GGCC 4 cut(s) 165, 249, 255, 297
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 2 cut(s) 177, 508
BsnI GGCC 4 cut(s) 165, 249, 255, 297
BsoBI CYCGRG 1 cut(s) 507
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 4 cut(s) 288, 299, 313, 315
BspANI GGCC 4 cut(s) 165, 249, 255, 297
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 2 cut(s) 270, 315
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 5 cut(s) 166, 250, 313, 372, 507
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 166, 250
Bst4CI ACNGT 2 cut(s) 142, 385
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 4 cut(s) 109, 299, 489, 514
BstDEI CTNAG 1 cut(s) 88
BstDSI CCRYGG 2 cut(s) 313, 372
BstFNI CGCG 2 cut(s) 270, 315
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 294
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 506, 507
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 2 cut(s) 270, 315
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 4 cut(s) 165, 249, 255, 297
BtgI CCRYGG 2 cut(s) 313, 372
BtgZI GCGATG 1 cut(s) 352
Cac8I GCNNGC 4 cut(s) 109, 299, 489, 514
CfoI GCGC 1 cut(s) 320
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 296
Cfr42I CCGCGG 1 cut(s) 316
Cfr9I CCCGGG 1 cut(s) 507
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 335
CviJI RGCY 9 cut(s) 92, 102, 111, 165, 249, 255, 297, 475, 512
CviKI_1 RGCY 9 cut(s) 92, 102, 111, 165, 249, 255, 297, 475, 512
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 88
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 166, 250
Eco57I CTGAAG 3 cut(s) 306, 422, 477
Eco88I CYCGRG 1 cut(s) 507
EcoT14I CCWWGG 2 cut(s) 166, 250
ErhI CCWWGG 2 cut(s) 166, 250
FaeI CATG 1 cut(s) 338
FaiI YATR 8 cut(s) 26, 54, 332, 336, 390, 416, 467, 469
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 57, 316
Fsp4HI GCNGC 2 cut(s) 57, 316
FspBI CTAG 2 cut(s) 167, 237
GlaI GCGC 1 cut(s) 319
GluI GCNGC 2 cut(s) 57, 316
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 4 cut(s) 165, 249, 255, 297
HapII CCGG 2 cut(s) 177, 508
HhaI GCGC 1 cut(s) 320
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HpaII CCGG 2 cut(s) 177, 508
HphI GGTGA 3 cut(s) 202, 422, 473
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 243, 325, 402
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 2 cut(s) 142, 385
HpyCH4V TGCA 7 cut(s) 64, 107, 120, 194, 218, 359, 516
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 294
HpyF3I CTNAG 1 cut(s) 88
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 318
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 3 cut(s) 97, 306, 444
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 2 cut(s) 167, 237
MaeIII GTNAC 3 cut(s) 136, 179, 264
MalI GATC 1 cut(s) 209
MbiI CCGCTC 1 cut(s) 301
MboI GATC 1 cut(s) 207
MboII GAAGA 4 cut(s) 10, 13, 25, 39
MluCI AATT 3 cut(s) 201, 291, 354
MnlI CCTC 5 cut(s) 55, 105, 196, 265, 438
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 315
MspI CCGG 2 cut(s) 177, 508
MspR9I CCNGG 2 cut(s) 508, 509
MvnI CGCG 2 cut(s) 270, 315
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 294
NciI CCSGG 2 cut(s) 508, 509
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PkrI GCNGC 2 cut(s) 58, 317
PscI ACATGT 1 cut(s) 334
PspPI GGNCC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacII CCGCGG 1 cut(s) 316
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 57, 316
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 296
SbfI CCTGCAGG 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 508, 509
SdaI CCTGCAGG 1 cut(s) 109
SetI ASST 4 cut(s) 94, 188, 436, 463
SfcI CTRYAG 1 cut(s) 105
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SmaI CCCGGG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse8387I CCTGCAGG 1 cut(s) 109
Sse9I AATT 3 cut(s) 201, 291, 354
SsiI CCGC 4 cut(s) 288, 299, 313, 315
SspMI CTAG 2 cut(s) 167, 237
StyD4I CCNGG 2 cut(s) 506, 507
StyI CCWWGG 2 cut(s) 166, 250
TaaI ACNGT 2 cut(s) 142, 385
TasI AATT 3 cut(s) 201, 291, 354
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 13, 355
TspGWI ACGGA 1 cut(s) 389
TspMI CCCGGG 1 cut(s) 507
XceI RCATGY 1 cut(s) 338
XmaI CCCGGG 1 cut(s) 507
XmaJI CCTAGG 1 cut(s) 166
XspI CTAG 2 cut(s) 167, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.