RchiOBHm_Chr2g0094741

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000361
Physical Location & Seq
Forward (+)
7667830 .. 7668776
947 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46974

Sequence Viewer

Length: 630 bp
ATGATTTTCCCTATCTTTTTCACATTTGTTCTCCTCCTTTCCATTTCCGATGCTGCAGTGCAGGACTTCTGTGTTGCAGACTACAAGGCTCCAGAAGGCCCTGCAGGCTACTCCTGCAAGAAGGCTGCAAAAGTTACCGTAGATGACTTTGTATTCTCTGGCCTAGGTGTTGCTGGTAACACCACAAACATTATCAAAGCTGCAGTCACCCCAGCATTTGCTGCTCAATTTCCTGGTGTTAACGGCCTTGGCATTTCGCTGGCTCGTCTAGACCTGGCTCCTGGTGGAGTTATCCCATTTCACACACACCCTGGAGCTTCAGAAGTCTTGATTGTTACGCAAGGAACCATAATTGCCGGGTTCATTTCATCAGCTAACACAGTTTATCTGAAAACCCTTAAGACGGGTGATCTTATGGTGTTCCCTCAAGGGTTATTGCACTTTCAAGTGAATGGAGGTGGTACTCCAGCAATTGCCTTCCCTAGCTTCAGTAGTCCAAGCCCCGGTCTGCAGATTCTGGACTTTGCACTTTTCAAAAACGATTTGCCTACATCATTGGTAGCAATGACTACTTTCCTCGATGTTGCTCAGATCAAGAAACTTAAGGGTGTTCTAGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

21.7

Weight (kDa)

6.81

Isoelectric Point (pI)

23.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 198 1.8e-36 Cupin
Cupin_2 PF07883 90 - 158 5.3e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 303, 472
AfaI GTAC 2 cut(s) 463, 622
AfiI CCNNNNNNNGG 2 cut(s) 403, 503
AflII CTTAAG 2 cut(s) 398, 602
AgsI TTSAA 2 cut(s) 446, 535
AjnI CCWGG 4 cut(s) 232, 273, 280, 310
AluBI AGCT 4 cut(s) 200, 317, 374, 486
AluI AGCT 4 cut(s) 200, 317, 374, 486
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 3 cut(s) 97, 160, 244
ApeKI GCWGC 4 cut(s) 53, 125, 200, 221
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspA2I CCTAGG 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 2 cut(s) 358, 504
AsuHPI GGTGA 2 cut(s) 199, 419
AvrII CCTAGG 1 cut(s) 163
BbvI GCAGC 4 cut(s) 40, 112, 187, 208
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 4 cut(s) 234, 275, 282, 312
BcnI CCSGG 2 cut(s) 358, 504
BfaI CTAG 4 cut(s) 164, 269, 483, 614
BfmI CTRYAG 4 cut(s) 54, 102, 201, 509
BfrI CTTAAG 2 cut(s) 398, 602
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 4 cut(s) 54, 126, 201, 222
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 4 cut(s) 55, 127, 202, 223
Bme1390I CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 3 cut(s) 90, 279, 346
BmrFI CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
BmsI GCATC 1 cut(s) 40
BpmI CTGGAG 3 cut(s) 75, 333, 450
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 2 cut(s) 358, 504
BsaJI CCNNGG 4 cut(s) 163, 247, 310, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 503
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 4 cut(s) 234, 275, 282, 312
BseDI CCNNGG 4 cut(s) 163, 247, 310, 502
BseLI CCNNNNNNNGG 2 cut(s) 403, 503
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 4 cut(s) 40, 112, 187, 208
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 3 cut(s) 99, 162, 246
BsiSI CCGG 2 cut(s) 357, 504
BslI CCNNNNNNNGG 2 cut(s) 403, 503
BsnI GGCC 3 cut(s) 99, 162, 246
Bsp143I GATC 2 cut(s) 409, 591
BspANI GGCC 3 cut(s) 99, 162, 246
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 3 cut(s) 90, 279, 346
BspMAI CTGCAG 4 cut(s) 58, 106, 205, 513
BspTI CTTAAG 2 cut(s) 398, 602
BsrDI GCAATG 1 cut(s) 570
BssECI CCNNGG 4 cut(s) 163, 247, 310, 502
BssMI GATC 2 cut(s) 409, 591
BssT1I CCWWGG 2 cut(s) 163, 247
Bst2UI CCWGG 4 cut(s) 234, 275, 282, 312
Bst4CI ACNGT 2 cut(s) 139, 382
BstAFI CTTAAG 2 cut(s) 398, 602
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 106, 261
BstDEI CTNAG 1 cut(s) 588
BstKTI GATC 2 cut(s) 412, 594
BstMBI GATC 2 cut(s) 409, 591
BstMWI GCNNNNNNNGC 3 cut(s) 105, 114, 221
BstNI CCWGG 4 cut(s) 234, 275, 282, 312
BstSCI CCNGG 6 cut(s) 232, 273, 280, 310, 356, 502
BstSFI CTRYAG 4 cut(s) 54, 102, 201, 509
BstV1I GCAGC 4 cut(s) 40, 112, 187, 208
BsuRI GGCC 3 cut(s) 99, 162, 246
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 106, 261
CaiI CAGNNNCTG 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 462, 621
CviQI GTAC 2 cut(s) 462, 621
DdeI CTNAG 1 cut(s) 588
DpnI GATC 2 cut(s) 411, 593
DpnII GATC 2 cut(s) 409, 591
Eco130I CCWWGG 2 cut(s) 163, 247
Eco57I CTGAAG 2 cut(s) 303, 472
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 4 cut(s) 232, 273, 280, 310
EcoT14I CCWWGG 2 cut(s) 163, 247
ErhI CCWWGG 2 cut(s) 163, 247
FaiI YATR 2 cut(s) 350, 416
Fnu4HI GCNGC 4 cut(s) 54, 126, 201, 222
Fsp4HI GCNGC 4 cut(s) 54, 126, 201, 222
FspBI CTAG 4 cut(s) 164, 269, 483, 614
GluI GCNGC 4 cut(s) 54, 126, 201, 222
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 3 cut(s) 75, 333, 450
HaeIII GGCC 3 cut(s) 99, 162, 246
HapII CCGG 2 cut(s) 357, 504
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 514
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 2 cut(s) 357, 504
HphI GGTGA 2 cut(s) 199, 419
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 4 cut(s) 49, 322, 390, 591
Hpy188III TCNNGA 5 cut(s) 92, 269, 328, 518, 595
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 89, 115, 487
HpyCH4III ACNGT 2 cut(s) 139, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 114, 221
HpyF3I CTNAG 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 409, 591
LmnI GCTCC 3 cut(s) 94, 283, 314
Lsp1109I GCAGC 4 cut(s) 40, 112, 187, 208
LweI GCATC 1 cut(s) 40
MaeI CTAG 4 cut(s) 164, 269, 483, 614
MaeIII GTNAC 4 cut(s) 133, 176, 205, 334
MalI GATC 2 cut(s) 411, 593
MboI GATC 2 cut(s) 409, 591
MfeI CAATTG 1 cut(s) 471
MluCI AATT 4 cut(s) 227, 351, 471, 625
MnlI CCTC 4 cut(s) 44, 435, 449, 587
MseI TTAA 4 cut(s) 240, 399, 603, 628
MspCI CTTAAG 2 cut(s) 398, 602
MspI CCGG 2 cut(s) 357, 504
MspR9I CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 4 cut(s) 234, 275, 282, 312
MwoI GCNNNNNNNGC 3 cut(s) 105, 114, 221
NciI CCSGG 2 cut(s) 358, 504
NdeII GATC 2 cut(s) 409, 591
NlaIV GGNNCC 3 cut(s) 90, 279, 346
NmuCI GTSAC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 4 cut(s) 55, 127, 202, 223
Psp6I CCWGG 4 cut(s) 232, 273, 280, 310
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 4 cut(s) 232, 273, 280, 310
PspN4I GGNNCC 3 cut(s) 90, 279, 346
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 4 cut(s) 58, 106, 205, 513
PstNI CAGNNNCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 463, 622
RsaNI GTAC 2 cut(s) 462, 621
SaqAI TTAA 4 cut(s) 240, 399, 603, 628
SatI GCNGC 4 cut(s) 54, 126, 201, 222
Sau3AI GATC 2 cut(s) 409, 591
Sau96I GGNCC 1 cut(s) 98
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 8 cut(s) 169, 202, 276, 319, 376, 460, 488, 619
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 4 cut(s) 54, 102, 201, 509
SmlI CTYRAG 3 cut(s) 398, 426, 602
SmoI CTYRAG 3 cut(s) 398, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 4 cut(s) 227, 351, 471, 625
SspMI CTAG 4 cut(s) 164, 269, 483, 614
StyD4I CCNGG 6 cut(s) 232, 273, 280, 310, 356, 502
StyI CCWWGG 2 cut(s) 163, 247
TaaI ACNGT 2 cut(s) 139, 382
TaqI TCGA 1 cut(s) 579
TasI AATT 4 cut(s) 227, 351, 471, 625
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 4 cut(s) 240, 399, 603, 628
Tru9I TTAA 4 cut(s) 240, 399, 603, 628
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 53, 125, 200, 221
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 352, 357
TspRI CASTG 1 cut(s) 63
Vha464I CTTAAG 2 cut(s) 398, 602
XbaI TCTAGA 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 4 cut(s) 164, 269, 483, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.