FvH4_1g18630

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000361
Physical Location & Seq
Forward (+)
10936916 .. 10937852
937 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18630.t1

Sequence Viewer

Length: 627 bp
ATGATGATTTCTATCTTCTTCATGTTTTCTCTCATTCTCTCCTCTTCCTATGCTGCTGTGCAAGATTTCTGTGTAGCAGACTACAAAGCTCCTACAAGCCCTGCAGGATACGCTTGCAAAAACCCCTCAGATGTTAAAGTAGACGATTTCGTGTACTCTGGCCTAGGAGTTCCTGGTAACATCTCAAATCTGAGCAAAGTGGGAATCTCAGCTGCACTTGTTGCGCAAGTTCCTGGCCTGAATGGCCTTGGTCTTTCGATGGTTCGCGCCGATTTGGAGGTTGGTGGAGTTGTTCCGCTGCATACTCACCGAGCTTCAGAGGCCATATTTGTTGCGGAAGGCAAAGTTATAGCGGGGTTCATCGCCTCGGATAACAAAGCTTATGTGAAAAATCTGAAGAAGGGTGATTTTATGGTGTTACCTCGAAGTTTGCTTCACTTCCAAGTAAATGCAGGTAGTACTCCAGCCCTTGTGTATGCTCTCTTCAGTAGCGACGACCCAGGTGTGCAGATTCTGCAGAATGCGCTGTTTCAAAACGATTTCCAAACTGAATTGATAGCAAAGACTACTCTCCTTGACACTGCTGAGATCAAGAAACTTAAGGCTCTTCTTGGTGGTACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

22.03

Weight (kDa)

6.27

Isoelectric Point (pI)

26.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 197 2.5e-31 Cupin
Cupin_2 PF07883 90 - 160 2.2e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 267
AciI CCGC 3 cut(s) 296, 335, 353
AcuI CTGAAG 3 cut(s) 300, 416, 469
AfaI GTAC 3 cut(s) 155, 460, 619
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 1 cut(s) 533
AjnI CCWGG 3 cut(s) 172, 232, 499
AluBI AGCT 4 cut(s) 89, 212, 314, 380
AluI AGCT 4 cut(s) 89, 212, 314, 380
AlwNI CAGNNNCTG 1 cut(s) 514
AoxI GGCC 4 cut(s) 160, 235, 244, 321
ApeKI GCWGC 3 cut(s) 53, 212, 298
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 3 cut(s) 226, 269, 526
AsuHPI GGTGA 2 cut(s) 299, 416
AvrII CCTAGG 1 cut(s) 163
BarI GAAGNNNNNNTAC 2 cut(s) 467, 499
BbvI GCAGC 3 cut(s) 40, 199, 285
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 3 cut(s) 174, 234, 501
BciVI GTATCC 1 cut(s) 101
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 2 cut(s) 102, 515
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 443
BfuI GTATCC 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 3 cut(s) 54, 213, 299
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 3 cut(s) 55, 214, 300
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 174, 234, 501
BmrFI CCNGG 3 cut(s) 174, 234, 501
BpmI CTGGAG 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 163, 247, 366, 499
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 3 cut(s) 174, 234, 501
BseDI CCNNGG 4 cut(s) 163, 247, 366, 499
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 4 cut(s) 141, 182, 222, 576
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 3 cut(s) 40, 199, 285
BsgI GTGCAG 2 cut(s) 198, 527
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 4 cut(s) 162, 237, 246, 323
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 4 cut(s) 162, 237, 246, 323
Bsp143I GATC 1 cut(s) 588
BspACI CCGC 3 cut(s) 296, 335, 353
BspANI GGCC 4 cut(s) 162, 237, 246, 323
BspCNI CTCAG 4 cut(s) 140, 183, 221, 577
BspFNI CGCG 1 cut(s) 267
BspMAI CTGCAG 2 cut(s) 106, 519
BspMI ACCTGC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 612
BspTI CTTAAG 1 cut(s) 599
BssECI CCNNGG 4 cut(s) 163, 247, 366, 499
BssMI GATC 1 cut(s) 588
BssT1I CCWWGG 2 cut(s) 163, 247
Bst2UI CCWGG 3 cut(s) 174, 234, 501
Bst6I CTCTTC 3 cut(s) 49, 488, 612
BstAFI CTTAAG 1 cut(s) 599
BstAPI GCANNNNNTGC 2 cut(s) 221, 514
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 4 cut(s) 127, 191, 208, 585
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 3 cut(s) 226, 269, 526
BstKTI GATC 1 cut(s) 591
BstMBI GATC 1 cut(s) 588
BstMWI GCNNNNNNNGC 6 cut(s) 110, 221, 243, 320, 514, 523
BstNI CCWGG 3 cut(s) 174, 234, 501
BstSCI CCNGG 3 cut(s) 172, 232, 499
BstSFI CTRYAG 2 cut(s) 102, 515
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 40, 199, 285
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 4 cut(s) 162, 237, 246, 323
BtgZI GCGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 1 cut(s) 115
CaiI CAGNNNCTG 1 cut(s) 514
CfoI GCGC 3 cut(s) 226, 269, 526
Csp6I GTAC 3 cut(s) 154, 459, 618
CviAII CATG 1 cut(s) 22
CviQI GTAC 3 cut(s) 154, 459, 618
DdeI CTNAG 4 cut(s) 127, 191, 208, 585
DpnI GATC 1 cut(s) 590
DpnII GATC 1 cut(s) 588
Eam1104I CTCTTC 3 cut(s) 49, 488, 612
EarI CTCTTC 3 cut(s) 49, 488, 612
Eco130I CCWWGG 2 cut(s) 163, 247
Eco57I CTGAAG 3 cut(s) 300, 416, 469
EcoRII CCWGG 3 cut(s) 172, 232, 499
EcoT14I CCWWGG 2 cut(s) 163, 247
ErhI CCWWGG 2 cut(s) 163, 247
FaeI CATG 1 cut(s) 25
FaiI YATR 8 cut(s) 23, 51, 303, 326, 350, 384, 413, 477
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 346
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 54, 213, 299
Fsp4HI GCNGC 3 cut(s) 54, 213, 299
FspBI CTAG 1 cut(s) 164
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 3 cut(s) 225, 268, 525
GluI GCNGC 3 cut(s) 54, 213, 299
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 4 cut(s) 162, 237, 246, 323
HhaI GCGC 3 cut(s) 226, 269, 526
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 3 cut(s) 224, 267, 524
HinP1I GCGC 3 cut(s) 224, 267, 524
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 2 cut(s) 204, 511
HphI GGTGA 2 cut(s) 299, 416
Hpy166II GTNNAC 2 cut(s) 142, 154
Hpy188I TCNGA 5 cut(s) 130, 192, 319, 370, 396
Hpy188III TCNNGA 1 cut(s) 592
Hpy8I GTNNAC 2 cut(s) 142, 154
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 332, 394
HpyCH4V TGCA 8 cut(s) 61, 104, 117, 215, 301, 452, 508, 517
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 221, 243, 320, 514, 523
HpyF3I CTNAG 4 cut(s) 127, 191, 208, 585
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 3 cut(s) 224, 267, 524
Kzo9I GATC 1 cut(s) 588
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 3 cut(s) 40, 199, 285
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 176, 417
MalI GATC 1 cut(s) 590
MboI GATC 1 cut(s) 588
MboII GAAGA 6 cut(s) 7, 10, 36, 409, 475, 599
MluCI AATT 2 cut(s) 551, 622
MnlI CCTC 6 cut(s) 52, 136, 271, 313, 376, 432
MseI TTAA 2 cut(s) 135, 600
MspA1I CMGCKG 2 cut(s) 212, 298
MspCI CTTAAG 1 cut(s) 599
MspR9I CCNGG 3 cut(s) 174, 234, 501
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 3 cut(s) 174, 234, 501
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 6 cut(s) 110, 221, 243, 320, 514, 523
NdeII GATC 1 cut(s) 588
NlaIII CATG 1 cut(s) 25
NsbI TGCGCA 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 612
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 204, 511
PkrI GCNGC 3 cut(s) 55, 214, 300
Psp6I CCWGG 3 cut(s) 172, 232, 499
PspGI CCWGG 3 cut(s) 172, 232, 499
PstI CTGCAG 2 cut(s) 106, 519
PstNI CAGNNNCTG 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 3 cut(s) 155, 460, 619
RsaNI GTAC 3 cut(s) 154, 459, 618
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 135, 600
SatI GCNGC 3 cut(s) 54, 213, 299
Sau3AI GATC 1 cut(s) 588
SbfI CCTGCAGG 1 cut(s) 106
ScaI AGTACT 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 174, 234, 501
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 8 cut(s) 91, 214, 282, 316, 382, 424, 457, 505
SfcI CTRYAG 2 cut(s) 102, 515
SfiI GGCCNNNNNGGCC 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 2 cut(s) 551, 622
SsiI CCGC 3 cut(s) 296, 335, 353
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 3 cut(s) 172, 232, 499
StyI CCWWGG 2 cut(s) 163, 247
TaqI TCGA 2 cut(s) 257, 424
TasI AATT 2 cut(s) 551, 622
TatI WGTACW 2 cut(s) 153, 458
TfiI GAWTC 2 cut(s) 204, 511
Tru1I TTAA 2 cut(s) 135, 600
Tru9I TTAA 2 cut(s) 135, 600
TscAI CASTG 1 cut(s) 586
TseI GCWGC 3 cut(s) 53, 212, 298
TspDTI ATGAA 2 cut(s) 10, 349
TspRI CASTG 1 cut(s) 586
Vha464I CTTAAG 1 cut(s) 599
XmaJI CCTAGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.