Rh2AG093800

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000361
Physical Location & Seq
Forward (+)
7880314 .. 7882897
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG093800.1

Sequence Viewer

Length: 576 bp
ATGGCTCAAGACTTCTGTGTTGCAGACTTGACAGCTCCAGAAGGCCCTGCAGGCTACTCCTGCAAGAAGCCTGCAAAAGTTACCGTAGATGACTTTGTGTTCTCTGGCCTAGGCATTGCTGGTAACACCACCAATATCATCAAAGCTGCAGTCACACCTGCTTTTGCTGCTCAATTTCCTGGTGTCAATGGCCTCGGCATTTCGCTGGCTCGTTTAGACTTGGCTGTTGATGGAGTCATCCCATTTCACACGCACCCCGGAGCTTCGGAAGTCCTGATTGTTGTGGAAGGGACAATCTGTGCCGGGTTTGTTTCCTCAGCTAACACAGTTTATCTACAAACTCTTGAGAAGGGTGACAGTATGGTTTTCCCTCAAGGTTTGTTGCACTTCCAAGTCAATGGAGGTGATACTCCAGCCCTTGCCTTTGTTAGCTTCAGTAGTCCTAGCCCCGGTCTGCAGATTCTGGACTTTGCATTATTTAAAAATGACTTACCGACCCCATTGATAGCTCAAACCACATTCCTCGACGTTGCTCAGATAAAGAAACTTAAGGGTGTTCTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

191

Amino Acids

19.75

Weight (kDa)

4.94

Isoelectric Point (pI)

23.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 36 - 180 2.3e-37 Cupin
Cupin_2 PF07883 73 - 143 1.6e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 1 cut(s) 449
AflII CTTAAG 1 cut(s) 548
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 6 cut(s) 35, 146, 263, 320, 432, 509
AluI AGCT 6 cut(s) 35, 146, 263, 320, 432, 509
AlwNI CAGNNNCTG 1 cut(s) 463
AoxI GGCC 3 cut(s) 43, 106, 190
ApeKI GCWGC 2 cut(s) 146, 167
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspA2I CCTAGG 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 3 cut(s) 258, 304, 450
AsuHPI GGTGA 2 cut(s) 365, 416
AvrII CCTAGG 1 cut(s) 109
BbvCI CCTCAGC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 133, 154
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 3 cut(s) 258, 304, 450
BfaI CTAG 2 cut(s) 110, 444
BfmI CTRYAG 3 cut(s) 48, 147, 455
BfrI CTTAAG 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 2 cut(s) 147, 168
BlnI CCTAGG 1 cut(s) 109
BlsI GCNGC 2 cut(s) 148, 169
Bme1390I CCNGG 4 cut(s) 180, 258, 304, 450
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 4 cut(s) 180, 258, 304, 450
BpmI CTGGAG 2 cut(s) 21, 396
Bpu10I CCTNAGC 1 cut(s) 316
BpuEI CTTGAG 2 cut(s) 357, 365
BpuMI CCSGG 3 cut(s) 258, 304, 450
BsaJI CCNNGG 4 cut(s) 109, 193, 256, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 4 cut(s) 109, 193, 256, 448
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 330, 548
BseXI GCAGC 2 cut(s) 133, 154
BshFI GGCC 3 cut(s) 45, 108, 192
BsiSI CCGG 3 cut(s) 258, 303, 450
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 3 cut(s) 45, 108, 192
BspANI GGCC 3 cut(s) 45, 108, 192
BspCNI CTCAG 2 cut(s) 329, 547
BspMAI CTGCAG 3 cut(s) 52, 151, 459
BspMI ACCTGC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 4 cut(s) 109, 193, 256, 448
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 85, 328, 359
BstAFI CTTAAG 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 52, 72, 207
BstDEI CTNAG 2 cut(s) 316, 534
BstF5I GGATG 1 cut(s) 237
BstMWI GCNNNNNNNGC 3 cut(s) 51, 60, 167
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 4 cut(s) 178, 256, 302, 448
BstSFI CTRYAG 3 cut(s) 48, 147, 455
BstV1I GCAGC 2 cut(s) 133, 154
BstXI CCANNNNNNTGG 1 cut(s) 398
BsuRI GGCC 3 cut(s) 45, 108, 192
BtsCI GGATG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 52, 72, 207
CaiI CAGNNNCTG 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 567
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 2 cut(s) 316, 534
DraI TTTAAA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaiI YATR 1 cut(s) 362
FaqI GGGAC 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 147, 168
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 147, 168
FspBI CTAG 2 cut(s) 110, 444
GluI GCNGC 2 cut(s) 147, 168
GsuI CTGGAG 2 cut(s) 21, 396
HaeIII GGCC 3 cut(s) 45, 108, 192
HapII CCGG 3 cut(s) 258, 303, 450
HinfI GANTC 2 cut(s) 234, 460
HpaII CCGG 3 cut(s) 258, 303, 450
HphI GGTGA 2 cut(s) 365, 416
Hpy188I TCNGA 2 cut(s) 268, 537
Hpy188III TCNNGA 5 cut(s) 8, 38, 274, 344, 464
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 3 cut(s) 35, 281, 343
HpyCH4III ACNGT 3 cut(s) 85, 328, 359
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 8 cut(s) 23, 50, 63, 74, 149, 385, 457, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 60, 167
HpyF3I CTNAG 2 cut(s) 316, 534
HpySE526I ACGT 1 cut(s) 528
LmnI GCTCC 2 cut(s) 40, 260
Lsp1109I GCAGC 2 cut(s) 133, 154
MaeI CTAG 2 cut(s) 110, 444
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 4 cut(s) 79, 122, 151, 353
MluCI AATT 2 cut(s) 173, 571
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 5 cut(s) 203, 325, 381, 395, 533
MseI TTAA 3 cut(s) 480, 549, 574
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 3 cut(s) 258, 303, 450
MspR9I CCNGG 4 cut(s) 180, 258, 304, 450
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 51, 60, 167
NciI CCSGG 3 cut(s) 258, 304, 450
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 151, 353
PaqCI CACCTGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 460
PkrI GCNGC 2 cut(s) 148, 169
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 3 cut(s) 52, 151, 459
PstNI CAGNNNCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SaqAI TTAA 3 cut(s) 480, 549, 574
SatI GCNGC 2 cut(s) 147, 168
Sau96I GGNCC 1 cut(s) 44
SbfI CCTGCAGG 1 cut(s) 52
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 4 cut(s) 180, 258, 304, 450
SdaI CCTGCAGG 1 cut(s) 52
SfcI CTRYAG 3 cut(s) 48, 147, 455
SmlI CTYRAG 4 cut(s) 6, 344, 372, 548
SmoI CTYRAG 4 cut(s) 6, 344, 372, 548
Sse8387I CCTGCAGG 1 cut(s) 52
Sse9I AATT 2 cut(s) 173, 571
SspMI CTAG 2 cut(s) 110, 444
StyD4I CCNGG 4 cut(s) 178, 256, 302, 448
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 85, 328, 359
TaiI ACGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 525
TasI AATT 2 cut(s) 173, 571
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 3 cut(s) 480, 549, 574
Tru9I TTAA 3 cut(s) 480, 549, 574
TseFI GTSAC 2 cut(s) 151, 353
TseI GCWGC 2 cut(s) 146, 167
Tsp45I GTSAC 2 cut(s) 151, 353
Vha464I CTTAAG 1 cut(s) 548
XmaJI CCTAGG 1 cut(s) 109
XspI CTAG 2 cut(s) 110, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.