Rh2DG098300

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000361
Physical Location & Seq
Reverse (-)
7905589 .. 7908076
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG098300.1

Sequence Viewer

Length: 702 bp
ATGACCGTTTTCGCCGTCTCCTTCATTTTTTGTCTCGTTCTCTCATTTTCCTATGCTGCTGTGCAGGACTTCTGTGTTGCGGACTACGCAGCCCCTCAAAGCCCTGCAGGCTACTCTTGCAAAAACCCTGCAAATGTTACGGTAGATGATTTCGTATACACTGGTCTTGAAGTTGCCGGCAATACCTCAAATATTATTAAAGCTGGACTCAAGCCACCATTTGTTTCTCAGTTTCCTGGTCTGAATGGACTTGGCCTTTCACTGGCTCGGGCAGACTTGGCTGTTGGTGGAGTCATCCCACTTCACACACACCAGAGAGCTACAGAAATCATACTTATTGTCGAAGGAACAGTAGTTACCGGGTTCATTGACTCAAATAACAAACTTTATTTAAAAACTCTGAAGAAGGGTGACATTATGGTTTTGCCTTCAGGGTTGTTTCACTTCCAAGTGAATGGAGGTGATACTCCAGTACTTGAATTTGCTGCCTTCAGTAGTGCAAACCCTGGTGTGCAGATTCTGGAGAATTCACTGTTTCAAAACGATTTACCTACAGAATTGATACACAGACTACATTCCTCGAAGCTGCTTAGATTAAGAAATTTGAGGGTTTTCTTGGTGGAGATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGATGAAGATGCTAAACCCATTTTACAATATGGACACAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

233

Amino Acids

25.24

Weight (kDa)

5.83

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 60 - 189 5.1e-33 Cupin
Cupin_2 PF07883 91 - 158 3.2e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AciI CCGC 1 cut(s) 80
AcsI RAATTY 3 cut(s) 479, 526, 601
AcuI CTGAAG 3 cut(s) 414, 422, 475
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 3 cut(s) 170, 479, 539
AjnI CCWGG 2 cut(s) 235, 505
AluBI AGCT 3 cut(s) 203, 320, 586
AluI AGCT 3 cut(s) 203, 320, 586
Alw26I GTCTC 2 cut(s) 22, 38
AlwNI CAGNNNCTG 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 56, 89, 485, 586
ApoI RAATTY 3 cut(s) 479, 526, 601
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 422, 473
AvaI CYCGRG 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 456, 489
BanII GRGCYC 1 cut(s) 650
BbvI GCAGC 4 cut(s) 43, 101, 472, 573
BciT130I CCWGG 2 cut(s) 237, 507
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 22, 38
BfmI CTRYAG 3 cut(s) 105, 321, 552
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 4 cut(s) 57, 90, 486, 587
BlsI GCNGC 4 cut(s) 58, 91, 487, 588
BmcAI AGTACT 1 cut(s) 474
Bme1390I CCNGG 3 cut(s) 237, 361, 507
BmeT110I CYCGRG 1 cut(s) 267
BmrFI CCNGG 3 cut(s) 237, 361, 507
BmsI GCATC 1 cut(s) 658
BpmI CTGGAG 2 cut(s) 453, 542
BpuEI CTTGAG 2 cut(s) 194, 634
BpuMI CCSGG 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 505
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 3 cut(s) 166, 267, 470
BseBI CCWGG 2 cut(s) 237, 507
BseDI CCNNGG 1 cut(s) 505
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 3 cut(s) 166, 267, 470
BseXI GCAGC 4 cut(s) 43, 101, 472, 573
BsgI GTGCAG 2 cut(s) 83, 533
BshFI GGCC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 177, 360
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 22, 38
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 650
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 3 cut(s) 166, 267, 470
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 505
BssNAI GTATAC 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 237, 507
Bst4CI ACNGT 4 cut(s) 7, 142, 352, 534
BstC8I GCNNGC 2 cut(s) 109, 178
BstDEI CTNAG 2 cut(s) 228, 590
BstF5I GGATG 1 cut(s) 294
BstMAI GTCTC 2 cut(s) 22, 38
BstMWI GCNNNNNNNGC 4 cut(s) 86, 108, 117, 278
BstNI CCWGG 2 cut(s) 237, 507
BstSCI CCNGG 3 cut(s) 235, 359, 505
BstSFI CTRYAG 3 cut(s) 105, 321, 552
BstV1I GCAGC 4 cut(s) 43, 101, 472, 573
BstXI CCANNNNNNTGG 1 cut(s) 455
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 3 cut(s) 159, 260, 530
Cac8I GCNNGC 2 cut(s) 109, 178
CaiI CAGNNNCTG 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 176
Csp6I GTAC 1 cut(s) 473
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 2 cut(s) 228, 590
DraI TTTAAA 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 650
Eco57I CTGAAG 3 cut(s) 414, 422, 475
Eco88I CYCGRG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 235, 505
EcoT38I GRGCYC 1 cut(s) 650
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 6 cut(s) 54, 157, 332, 419, 644, 690
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 57, 90, 486, 587
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 650
Fsp4HI GCNGC 4 cut(s) 57, 90, 486, 587
GluI GCNGC 4 cut(s) 57, 90, 486, 587
GsuI CTGGAG 2 cut(s) 453, 542
HaeIII GGCC 1 cut(s) 255
HapII CCGG 2 cut(s) 177, 360
HinfI GANTC 4 cut(s) 207, 291, 371, 517
HpaII CCGG 2 cut(s) 177, 360
HphI GGTGA 2 cut(s) 422, 473
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 243, 402
Hpy188III TCNNGA 2 cut(s) 167, 521
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 5 cut(s) 31, 338, 400, 438, 499
HpyCH4III ACNGT 4 cut(s) 7, 142, 352, 534
HpyCH4V TGCA 6 cut(s) 64, 107, 120, 131, 500, 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 108, 117, 278
HpyF3I CTNAG 2 cut(s) 228, 590
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Lsp1109I GCAGC 4 cut(s) 43, 101, 472, 573
LweI GCATC 1 cut(s) 658
MaeIII GTNAC 3 cut(s) 136, 355, 410
MboII GAAGA 2 cut(s) 415, 677
MhlI GDGCHC 1 cut(s) 650
MluCI AATT 4 cut(s) 479, 526, 557, 601
MlyI GAGTC 3 cut(s) 201, 300, 365
MnlI CCTC 6 cut(s) 105, 196, 452, 589, 600, 622
MroNI GCCGGC 1 cut(s) 176
MseI TTAA 3 cut(s) 198, 392, 596
MspI CCGG 2 cut(s) 177, 360
MspR9I CCNGG 3 cut(s) 237, 361, 507
MvaI CCWGG 2 cut(s) 237, 507
MwoI GCNNNNNNNGC 4 cut(s) 86, 108, 117, 278
NaeI GCCGGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 361
NgoMIV GCCGGC 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 410
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 4 cut(s) 58, 91, 487, 588
PleI GAGTC 3 cut(s) 201, 299, 365
PpsI GAGTC 3 cut(s) 201, 299, 365
Psp6I CCWGG 2 cut(s) 235, 505
PspGI CCWGG 2 cut(s) 235, 505
PsrI GAACNNNNNNTAC 2 cut(s) 340, 372
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 520
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SaqAI TTAA 3 cut(s) 198, 392, 596
SatI GCNGC 4 cut(s) 57, 90, 486, 587
SbfI CCTGCAGG 1 cut(s) 109
ScaI AGTACT 1 cut(s) 474
SchI GAGTC 3 cut(s) 201, 300, 365
ScrFI CCNGG 3 cut(s) 237, 361, 507
SdaI CCTGCAGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 650
SetI ASST 7 cut(s) 188, 205, 322, 463, 553, 588, 701
SfaNI GCATC 1 cut(s) 658
SfcI CTRYAG 3 cut(s) 105, 321, 552
SmlI CTYRAG 2 cut(s) 209, 649
SmoI CTYRAG 2 cut(s) 209, 649
Sse8387I CCTGCAGG 1 cut(s) 109
Sse9I AATT 4 cut(s) 479, 526, 557, 601
SsiI CCGC 1 cut(s) 80
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 235, 359, 505
TaaI ACNGT 4 cut(s) 7, 142, 352, 534
TaqI TCGA 2 cut(s) 342, 581
TasI AATT 4 cut(s) 479, 526, 557, 601
TatI WGTACW 1 cut(s) 472
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 3 cut(s) 198, 392, 596
Tru9I TTAA 3 cut(s) 198, 392, 596
TscAI CASTG 3 cut(s) 166, 267, 537
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 4 cut(s) 56, 89, 485, 586
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 13, 355, 678
TspRI CASTG 3 cut(s) 166, 267, 537
XapI RAATTY 3 cut(s) 479, 526, 601
XmiI GTMKAC 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.