Prupe.7G200100_v2.0.a1

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000361
Physical Location & Seq
Reverse (-)
18714706 .. 18715382
677 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G200100.1

Sequence Viewer

Length: 630 bp
ATGATTTTCCCTATCTTGTTCACATTTTTTCTCCTCCTCTCCTCCTCCAATGCGGCTGTGCAAGACTTCTGTGTTGCAGACTTAGCAGCTCCTGAAGGCCCTGCAGGCTTCTCTTGCAAAAAGCCTGCAAGTGTTAAAGTAAATGATTTTGTGTTCTCGGGCCTGGGCATTGCTGGTAACACCAGTAACATCATCAAAGCTGCAGTCACCCCTGCATTTGTTGCTCAGTTTCCTGGTGTGAATGGCCTCGGCATTTCCATCGCCCGTCTAGACTTGGCGGTTGGCGGAGTTGTCCCATTTCACACACACCCTGGAGCTTCAGAAGTCCTAATTGTCGCCCAAGGGACAATCTGCGCCGGGTTTGTTGCCTCAGATAACACACCTTATCTGCAAACTCTTGAGAAGGGTGACATTATGGTTTTCCCACAGGGGCTGTTGCACTTCCAAGTCAATGGAGGTGAGGCTCCAGCCCTTGCATTTGCTAGCTTCGGGAGTGCAAGCCCGGGTCTCCAAATTCTGGACTTTGCTTTGTTCAAAAACGATTTGCCTACCGAAGTAATAGCTCAGACTACTTTCCTTGATGCTGCTCAGATAAAGAAACTGAAGGGTGTTCTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

210

Amino Acids

21.56

Weight (kDa)

5.18

Isoelectric Point (pI)

26.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 517
AciI CCGC 3 cut(s) 53, 278, 285
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 3 cut(s) 114, 303, 623
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 1 cut(s) 535
AjnI CCWGG 3 cut(s) 162, 232, 310
AluBI AGCT 5 cut(s) 89, 200, 317, 486, 563
AluI AGCT 5 cut(s) 89, 200, 317, 486, 563
Alw26I GTCTC 1 cut(s) 512
AlwNI CAGNNNCTG 2 cut(s) 92, 433
Ama87I CYCGRG 2 cut(s) 157, 502
AoxI GGCC 3 cut(s) 97, 160, 244
ApeKI GCWGC 3 cut(s) 86, 200, 584
ApoI RAATTY 1 cut(s) 513
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 98, 160
AsuC2I CCSGG 3 cut(s) 358, 503, 504
AsuHPI GGTGA 3 cut(s) 199, 419, 470
AsuNHI GCTAGC 1 cut(s) 482
AvaI CYCGRG 2 cut(s) 157, 502
BbvI GCAGC 3 cut(s) 98, 187, 571
BccI CCATC 1 cut(s) 266
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 3 cut(s) 164, 234, 312
BcnI CCSGG 3 cut(s) 358, 503, 504
BcoDI GTCTC 1 cut(s) 512
BfaI CTAG 2 cut(s) 269, 483
BfmI CTRYAG 2 cut(s) 102, 201
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 4 cut(s) 54, 87, 201, 585
BlsI GCNGC 4 cut(s) 55, 88, 202, 586
Bme1390I CCNGG 6 cut(s) 164, 234, 312, 358, 503, 504
BmeT110I CYCGRG 2 cut(s) 157, 502
BmgT120I GGNCC 2 cut(s) 98, 160
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 6 cut(s) 164, 234, 312, 358, 503, 504
BmsI GCATC 1 cut(s) 571
BmtI GCTAGC 1 cut(s) 486
BpmI CTGGAG 2 cut(s) 333, 450
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 3 cut(s) 358, 503, 504
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 5 cut(s) 163, 247, 310, 340, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 3 cut(s) 164, 234, 312
BseDI CCNNGG 5 cut(s) 163, 247, 310, 340, 502
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 4 cut(s) 239, 384, 578, 602
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 4 cut(s) 23, 26, 31, 34
BseXI GCAGC 3 cut(s) 98, 187, 571
BshFI GGCC 3 cut(s) 99, 162, 246
BsiHKCI CYCGRG 2 cut(s) 157, 502
BsiSI CCGG 2 cut(s) 357, 503
BslFI GGGAC 2 cut(s) 278, 358
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 1 cut(s) 512
BsmFI GGGAC 2 cut(s) 278, 358
BsnI GGCC 3 cut(s) 99, 162, 246
Bso31I GGTCTC 1 cut(s) 512
BsoBI CYCGRG 2 cut(s) 157, 502
BspACI CCGC 3 cut(s) 53, 278, 285
BspANI GGCC 3 cut(s) 99, 162, 246
BspCNI CTCAG 4 cut(s) 238, 383, 577, 601
BspLI GGNNCC 1 cut(s) 465
BspMAI CTGCAG 2 cut(s) 106, 205
BspOI GCTAGC 1 cut(s) 486
BspTNI GGTCTC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 5 cut(s) 163, 247, 310, 340, 502
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 3 cut(s) 164, 234, 312
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 106, 126, 484, 499
BstDEI CTNAG 5 cut(s) 82, 225, 370, 564, 588
BstHHI GCGC 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 512
BstMWI GCNNNNNNNGC 4 cut(s) 83, 105, 114, 221
BstNI CCWGG 3 cut(s) 164, 234, 312
BstSCI CCNGG 6 cut(s) 162, 232, 310, 356, 501, 502
BstSFI CTRYAG 2 cut(s) 102, 201
BstV1I GCAGC 3 cut(s) 98, 187, 571
BstXI CCANNNNNNTGG 1 cut(s) 452
BsuRI GGCC 3 cut(s) 99, 162, 246
BtgZI GCGATG 1 cut(s) 244
Cac8I GCNNGC 4 cut(s) 106, 126, 484, 499
CaiI CAGNNNCTG 2 cut(s) 92, 433
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 98, 160
Cfr9I CCCGGG 1 cut(s) 502
Csp6I GTAC 1 cut(s) 621
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 5 cut(s) 82, 225, 370, 564, 588
EciI GGCGGA 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 512
Eco57I CTGAAG 3 cut(s) 114, 303, 623
Eco88I CYCGRG 2 cut(s) 157, 502
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 3 cut(s) 162, 232, 310
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaiI YATR 1 cut(s) 416
FaqI GGGAC 2 cut(s) 278, 358
Fnu4HI GCNGC 4 cut(s) 54, 87, 201, 585
Fsp4HI GCNGC 4 cut(s) 54, 87, 201, 585
FspBI CTAG 2 cut(s) 269, 483
GlaI GCGC 1 cut(s) 355
GluI GCNGC 4 cut(s) 54, 87, 201, 585
GsuI CTGGAG 2 cut(s) 333, 450
HaeIII GGCC 3 cut(s) 99, 162, 246
HapII CCGG 2 cut(s) 357, 503
HhaI GCGC 1 cut(s) 356
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HpaII CCGG 2 cut(s) 357, 503
HphI GGTGA 3 cut(s) 199, 419, 470
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 4 cut(s) 322, 373, 567, 591
Hpy188III TCNNGA 5 cut(s) 92, 269, 398, 490, 518
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 3 cut(s) 89, 397, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 105, 114, 221
HpyF3I CTNAG 5 cut(s) 82, 225, 370, 564, 588
HspAI GCGC 1 cut(s) 354
LmnI GCTCC 3 cut(s) 94, 314, 469
Lsp1109I GCAGC 3 cut(s) 98, 187, 571
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 269, 483
MaeIII GTNAC 4 cut(s) 176, 185, 205, 407
MluCI AATT 3 cut(s) 330, 513, 625
MnlI CCTC 8 cut(s) 44, 47, 52, 55, 257, 379, 449, 454
MseI TTAA 2 cut(s) 135, 628
MspI CCGG 2 cut(s) 357, 503
MspR9I CCNGG 6 cut(s) 164, 234, 312, 358, 503, 504
MvaI CCWGG 3 cut(s) 164, 234, 312
MwoI GCNNNNNNNGC 4 cut(s) 83, 105, 114, 221
NciI CCSGG 3 cut(s) 358, 503, 504
NheI GCTAGC 1 cut(s) 482
NlaIV GGNNCC 1 cut(s) 465
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 205, 407
PflMI CCANNNNNTGG 1 cut(s) 517
PkrI GCNGC 4 cut(s) 55, 88, 202, 586
Psp6I CCWGG 3 cut(s) 162, 232, 310
PspGI CCWGG 3 cut(s) 162, 232, 310
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 98, 160
PstI CTGCAG 2 cut(s) 106, 205
PstNI CAGNNNCTG 2 cut(s) 92, 433
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 135, 628
SatI GCNGC 4 cut(s) 54, 87, 201, 585
Sau96I GGNCC 2 cut(s) 98, 160
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 6 cut(s) 164, 234, 312, 358, 503, 504
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 7 cut(s) 91, 202, 319, 385, 460, 488, 565
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 2 cut(s) 102, 201
SmaI CCCGGG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 3 cut(s) 330, 513, 625
SsiI CCGC 3 cut(s) 53, 278, 285
SspMI CTAG 2 cut(s) 269, 483
StyD4I CCNGG 6 cut(s) 162, 232, 310, 356, 501, 502
StyI CCWWGG 1 cut(s) 340
TasI AATT 3 cut(s) 330, 513, 625
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 135, 628
Tru9I TTAA 2 cut(s) 135, 628
TseFI GTSAC 2 cut(s) 205, 407
TseI GCWGC 3 cut(s) 86, 200, 584
Tsp45I GTSAC 2 cut(s) 205, 407
TspMI CCCGGG 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 517
XapI RAATTY 1 cut(s) 513
XbaI TCTAGA 1 cut(s) 268
XmaI CCCGGG 1 cut(s) 502
XspI CTAG 2 cut(s) 269, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.