Rw2G016310

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000361
Physical Location & Seq
Forward (+)
19154335 .. 19154973
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016310.1

Sequence Viewer

Length: 639 bp
ATGATGATCTCCCCCATCTGTTTCTTCATATTTTCTCTCGTTCTCTCCTCTTCCTATGCTACCGTGCAAGACTTCTGTGTTGCAGACTACACAGCTCTTCAAGGCCCTGCAGGGTACTCTTGCAAAGACCCCGCAAAAGTTACGGTAGATGATTTCGTCTACTCTGGCCTAAGAGTTCCTGGCAATACCTCCAATATTCACAAGTTTGGATTTGTACCTGCAGTTGTTGCTCAGTTTCCAGGTCTCAATGGCCTCGGCGTTTCGGTGGCTCGCACGGACTTGGGTGTTGGTGGAGTTATCCCATTCCACACTCACCGCGGAGCTACAGAAGTGCTAATTGTCGCGGAAGGAAGTTCGGTACTTGCAGGGTTCATTGACTCGAATAACAAAGTTTATCTGAAAACTCTGAGCAAGGGTGATAGTATGATTTTCCCTCGAGGTTTATTTCACTTCGCAGTGAATCAAGGCGATACTCCAGTCCTTATGTATGCTAGCTTAAGCAGTGAAAACCCAGGTCTGGATGTTTTGGAGACTTCACTGTTTAAAAACGATTTGTCTACTGATTTGATATCCAAGACTACTTTACTGGAGAAATCTCAGATCAGGAAACTTAAGCGTCTTCTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

212

Amino Acids

22.69

Weight (kDa)

6.89

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 56 - 201 3.4e-29 Cupin
Cupin_2 PF07883 93 - 163 3.6e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 226
AccI GTMKAC 2 cut(s) 159, 557
AccII CGCG 2 cut(s) 318, 344
AciI CCGC 4 cut(s) 132, 316, 318, 344
AfaI GTAC 4 cut(s) 116, 216, 360, 631
AfiI CCNNNNNNNGG 1 cut(s) 517
AflII CTTAAG 2 cut(s) 496, 611
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 3 cut(s) 178, 238, 511
AluBI AGCT 3 cut(s) 95, 323, 495
AluI AGCT 3 cut(s) 95, 323, 495
Alw26I GTCTC 2 cut(s) 248, 524
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 3 cut(s) 103, 166, 250
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 305, 428
AsuNHI GCTAGC 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 435
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BbsI GAAGAC 1 cut(s) 611
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 3 cut(s) 180, 240, 513
BcoDI GTCTC 2 cut(s) 248, 524
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 3 cut(s) 108, 219, 324
BfrI CTTAAG 2 cut(s) 496, 611
BfuAI ACCTGC 1 cut(s) 226
Bme1390I CCNGG 3 cut(s) 180, 240, 513
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 3 cut(s) 180, 240, 513
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 611
BpmI CTGGAG 2 cut(s) 459, 608
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 253, 316, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 476, 591
BseBI CCWGG 3 cut(s) 180, 240, 513
BseDI CCNNGG 3 cut(s) 253, 316, 511
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 3 cut(s) 245, 398, 611
BseNI ACTGG 2 cut(s) 476, 591
BseRI GAGGAG 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 318, 344
BshFI GGCC 3 cut(s) 105, 168, 252
BsiHKCI CYCGRG 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 2 cut(s) 248, 524
BsnI GGCC 3 cut(s) 105, 168, 252
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 435
Bsp143I GATC 2 cut(s) 6, 600
BspACI CCGC 4 cut(s) 132, 316, 318, 344
BspANI GGCC 3 cut(s) 105, 168, 252
BspCNI CTCAG 3 cut(s) 244, 399, 610
BspFNI CGCG 2 cut(s) 318, 344
BspMAI CTGCAG 2 cut(s) 112, 223
BspMI ACCTGC 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 495
BspQI GCTCTTC 1 cut(s) 102
BspTI CTTAAG 2 cut(s) 496, 611
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 2 cut(s) 476, 591
BssECI CCNNGG 3 cut(s) 253, 316, 511
BssMI GATC 2 cut(s) 6, 600
Bst2UI CCWGG 3 cut(s) 180, 240, 513
Bst4CI ACNGT 3 cut(s) 64, 145, 540
Bst6I CTCTTC 2 cut(s) 55, 102
BstAFI CTTAAG 2 cut(s) 496, 611
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 271, 493
BstDEI CTNAG 4 cut(s) 170, 231, 407, 597
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 526
BstFNI CGCG 2 cut(s) 318, 344
BstKTI GATC 2 cut(s) 9, 603
BstMAI GTCTC 2 cut(s) 248, 524
BstMBI GATC 2 cut(s) 6, 600
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 3 cut(s) 180, 240, 513
BstSCI CCNGG 3 cut(s) 178, 238, 511
BstSFI CTRYAG 3 cut(s) 108, 219, 324
BstUI CGCG 2 cut(s) 318, 344
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 3 cut(s) 105, 168, 252
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 526
BtsI GCAGTG 2 cut(s) 462, 508
BtsIMutI CAGTG 3 cut(s) 462, 508, 536
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 271, 493
Cfr13I GGNCC 1 cut(s) 104
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 1 cut(s) 605
Csp6I GTAC 4 cut(s) 115, 215, 359, 630
CviJI RGCY 7 cut(s) 95, 105, 168, 252, 269, 323, 495
CviKI_1 RGCY 7 cut(s) 95, 105, 168, 252, 269, 323, 495
CviQI GTAC 4 cut(s) 115, 215, 359, 630
DdeI CTNAG 4 cut(s) 170, 231, 407, 597
DpnI GATC 2 cut(s) 8, 602
DpnII GATC 2 cut(s) 6, 600
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 55, 102
EarI CTCTTC 2 cut(s) 55, 102
Eco31I GGTCTC 1 cut(s) 248
Eco32I GATATC 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 3 cut(s) 178, 238, 511
EcoRV GATATC 1 cut(s) 570
FaiI YATR 5 cut(s) 29, 57, 425, 485, 489
FauI CCCGC 1 cut(s) 139
FblI GTMKAC 2 cut(s) 159, 557
FokI GGATG 1 cut(s) 533
FspBI CTAG 1 cut(s) 492
GsuI CTGGAG 2 cut(s) 459, 608
HaeIII GGCC 3 cut(s) 105, 168, 252
HgaI GACGC 1 cut(s) 605
HinfI GANTC 2 cut(s) 377, 460
HphI GGTGA 2 cut(s) 305, 428
Hpy166II GTNNAC 2 cut(s) 160, 558
Hpy188I TCNGA 3 cut(s) 399, 408, 600
Hpy188III TCNNGA 2 cut(s) 518, 604
Hpy8I GTNNAC 2 cut(s) 160, 558
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 3 cut(s) 64, 145, 540
HpyCH4V TGCA 6 cut(s) 67, 83, 110, 123, 221, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 4 cut(s) 170, 231, 407, 597
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 6, 600
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 320
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 8, 602
MboI GATC 2 cut(s) 6, 600
MboII GAAGA 4 cut(s) 16, 42, 89, 611
MluCI AATT 2 cut(s) 336, 634
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 5 cut(s) 58, 199, 263, 431, 444
MseI TTAA 4 cut(s) 497, 543, 612, 637
MspA1I CMGCKG 1 cut(s) 318
MspCI CTTAAG 2 cut(s) 496, 611
MspR9I CCNGG 3 cut(s) 180, 240, 513
MvaI CCWGG 3 cut(s) 180, 240, 513
MvnI CGCG 2 cut(s) 318, 344
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 2 cut(s) 6, 600
NheI GCTAGC 1 cut(s) 491
NmeAIII GCCGAG 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 460
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 3 cut(s) 178, 238, 511
PspGI CCWGG 3 cut(s) 178, 238, 511
PspPI GGNCC 1 cut(s) 104
PspXI VCTCGAGB 1 cut(s) 435
PstI CTGCAG 2 cut(s) 112, 223
RsaI GTAC 4 cut(s) 116, 216, 360, 631
RsaNI GTAC 4 cut(s) 115, 215, 359, 630
SacII CCGCGG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 497, 543, 612, 637
Sau3AI GATC 2 cut(s) 6, 600
Sau96I GGNCC 1 cut(s) 104
SbfI CCTGCAGG 1 cut(s) 112
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 180, 240, 513
SdaI CCTGCAGG 1 cut(s) 112
SetI ASST 8 cut(s) 97, 191, 220, 244, 325, 442, 497, 517
SfcI CTRYAG 3 cut(s) 108, 219, 324
Sfr274I CTCGAG 1 cut(s) 435
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 3 cut(s) 435, 496, 611
SmoI CTYRAG 3 cut(s) 435, 496, 611
Sse8387I CCTGCAGG 1 cut(s) 112
Sse9I AATT 2 cut(s) 336, 634
SsiI CCGC 4 cut(s) 132, 316, 318, 344
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 178, 238, 511
TaaI ACNGT 3 cut(s) 64, 145, 540
TaqI TCGA 2 cut(s) 380, 436
TasI AATT 2 cut(s) 336, 634
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 4 cut(s) 497, 543, 612, 637
Tru9I TTAA 4 cut(s) 497, 543, 612, 637
TscAI CASTG 3 cut(s) 462, 508, 543
TspDTI ATGAA 2 cut(s) 16, 361
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 3 cut(s) 462, 508, 543
Vha464I CTTAAG 2 cut(s) 496, 611
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 2 cut(s) 159, 557
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.