MD15G1216500.v1.1

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000361
Physical Location & Seq
Forward (+)
17466249 .. 17467013
765 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1216500.v1.1.491

Sequence Viewer

Length: 765 bp
ATGGGCATATTCCTAACAACCAATTGCAGTGAGCTCAAGATATTTTCATATCCCTCTATATATATGTTCCCAATTATCATGAAGCATATCTTAAAAACAGCTTTAGCAAGCACACAATTTTTGTGCTACGTAACGATGATATTCCCTATCTTGTTCACGTTTTCTCTCCTCCTCTCCTCCTCCAATGCCGCTGTGCAGGACTTCTGTGTTGCAGACCTCACAGCTCCTGACGGCCCTGCAGGCTACTCTTGCAAAAGCCCTGCAAATGTTAAAGTAGATGACTTTGTTTTCTCGGGCCTAGGCGTTGCTGGCAACACTACAAACATCATCAAAGCTGCAGTCACCCCTGCATTTGCTGCTCAGTTCCCTGGTGTCAACGGCCTTGGCATTTCACTTGCGCGTCTGGACCTGGCTGTTGGTGGAGTCATCCCATTTCACACACACCCTGGAGGTTCGGAAGTCCTAATTGTCATCGAAGGGACCATCTGCGCCGGCTTTGTTTCCTCAGCGAACACAGTTTATCTACAAACTCTTGAGAAGGGAGACATTATGGTTTTCCCTCAGGGGTTACTGCACTTCCAAGTGAATGGAGGTGAGACTATGGCCCTTGCATTTGTTAGCTTCAGTAGTCCAAGCCCGGGGCTGCAGATTCTGGACTATGCGCTGTTTAAAAATGATTTACCAACGGAACTGATAGCGCAGACTACTTTCCTTGACGTTGCTCAGATCAAGAAACTGAAGGCCGCTCTTGGTGGTACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

255

Amino Acids

26.86

Weight (kDa)

5.45

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 99 - 243 2.3e-36 Cupin
Cupin_2 PF07883 135 - 203 2.1e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 746
AccII CGCG 1 cut(s) 400
AciI CCGC 2 cut(s) 189, 744
AcuI CTGAAG 2 cut(s) 607, 758
AfaI GTAC 1 cut(s) 757
AfiI CCNNNNNNNGG 1 cut(s) 638
AjnI CCWGG 3 cut(s) 367, 408, 445
AluBI AGCT 5 cut(s) 34, 101, 224, 335, 621
AluI AGCT 5 cut(s) 34, 101, 224, 335, 621
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 537, 590
AlwNI CAGNNNCTG 2 cut(s) 227, 652
Ama87I CYCGRG 2 cut(s) 292, 637
AoxI GGCC 5 cut(s) 232, 295, 379, 603, 741
ApeKI GCWGC 3 cut(s) 335, 356, 643
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
AspA2I CCTAGG 1 cut(s) 298
AspLEI GCGC 4 cut(s) 400, 491, 664, 700
AspS9I GGNCC 5 cut(s) 233, 295, 406, 480, 604
AsuC2I CCSGG 2 cut(s) 638, 639
AsuHPI GGTGA 2 cut(s) 334, 605
AvaI CYCGRG 2 cut(s) 292, 637
AvaII GGWCC 2 cut(s) 406, 480
AvrII CCTAGG 1 cut(s) 298
AxyI CCTNAGG 1 cut(s) 561
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 505
BbvI GCAGC 3 cut(s) 322, 343, 630
BccI CCATC 1 cut(s) 491
BceAI ACGGC 2 cut(s) 247, 394
BciT130I CCWGG 3 cut(s) 369, 410, 447
BcnI CCSGG 2 cut(s) 638, 639
BcoDI GTCTC 2 cut(s) 537, 590
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 3 cut(s) 237, 336, 644
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 5 cut(s) 189, 336, 357, 644, 744
BlnI CCTAGG 1 cut(s) 298
BlsI GCNGC 5 cut(s) 190, 337, 358, 645, 745
Bme1390I CCNGG 5 cut(s) 369, 410, 447, 638, 639
Bme18I GGWCC 2 cut(s) 406, 480
BmeT110I CYCGRG 2 cut(s) 292, 637
BmgT120I GGNCC 5 cut(s) 233, 295, 406, 480, 604
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 5 cut(s) 369, 410, 447, 638, 639
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 505
BpuEI CTTGAG 2 cut(s) 20, 554
BpuMI CCSGG 2 cut(s) 638, 639
BsaAI YACGTR 1 cut(s) 130
BsaJI CCNNGG 6 cut(s) 298, 367, 382, 445, 637, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse118I RCCGGY 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 561
BseBI CCWGG 3 cut(s) 369, 410, 447
BseDI CCNNGG 6 cut(s) 298, 367, 382, 445, 637, 638
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMII CTCAG 4 cut(s) 374, 519, 575, 737
BseRI GAGGAG 4 cut(s) 158, 161, 166, 169
BseXI GCAGC 3 cut(s) 322, 343, 630
BsgI GTGCAG 2 cut(s) 215, 557
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 5 cut(s) 234, 297, 381, 605, 743
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 2 cut(s) 292, 637
BsiSI CCGG 2 cut(s) 492, 638
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 2 cut(s) 537, 590
BsmFI GGGAC 1 cut(s) 493
BsnI GGCC 5 cut(s) 234, 297, 381, 605, 743
BsoBI CYCGRG 2 cut(s) 292, 637
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 726
BspACI CCGC 2 cut(s) 189, 744
BspANI GGCC 5 cut(s) 234, 297, 381, 605, 743
BspCNI CTCAG 4 cut(s) 373, 518, 574, 736
BspFNI CGCG 1 cut(s) 400
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 3 cut(s) 241, 340, 648
BsrBI CCGCTC 1 cut(s) 746
BsrFI RCCGGY 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 6 cut(s) 298, 367, 382, 445, 637, 638
BssMI GATC 1 cut(s) 726
BssT1I CCWWGG 2 cut(s) 298, 382
Bst2UI CCWGG 3 cut(s) 369, 410, 447
Bst4CI ACNGT 1 cut(s) 517
BstAPI GCANNNNNTGC 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 109, 241, 310, 493
BstDEI CTNAG 4 cut(s) 360, 505, 561, 723
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 1 cut(s) 400
BstHHI GCGC 4 cut(s) 400, 491, 664, 700
BstKTI GATC 1 cut(s) 729
BstMAI GTCTC 2 cut(s) 537, 590
BstMBI GATC 1 cut(s) 726
BstMWI GCNNNNNNNGC 4 cut(s) 240, 249, 309, 356
BstNI CCWGG 3 cut(s) 369, 410, 447
BstSCI CCNGG 5 cut(s) 367, 408, 445, 636, 637
BstSFI CTRYAG 3 cut(s) 237, 336, 644
BstSNI TACGTA 1 cut(s) 130
BstUI CGCG 1 cut(s) 400
BstV1I GCAGC 3 cut(s) 322, 343, 630
BstXI CCANNNNNNTGG 1 cut(s) 587
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 5 cut(s) 234, 297, 381, 605, 743
BtsCI GGATG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 4 cut(s) 109, 241, 310, 493
CaiI CAGNNNCTG 2 cut(s) 227, 652
CciI TCATGA 1 cut(s) 78
CfoI GCGC 4 cut(s) 400, 491, 664, 700
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 5 cut(s) 233, 295, 406, 480, 604
Cfr9I CCCGGG 1 cut(s) 637
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 756
CviAII CATG 1 cut(s) 79
CviQI GTAC 1 cut(s) 756
DdeI CTNAG 4 cut(s) 360, 505, 561, 723
DpnI GATC 1 cut(s) 728
DpnII GATC 1 cut(s) 726
DraI TTTAAA 1 cut(s) 670
Ecl136II GAGCTC 1 cut(s) 34
Eco105I TACGTA 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 298, 382
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 406, 480
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 2 cut(s) 607, 758
Eco81I CCTNAGG 1 cut(s) 561
Eco88I CYCGRG 2 cut(s) 292, 637
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 3 cut(s) 367, 408, 445
EcoT14I CCWWGG 2 cut(s) 298, 382
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 298, 382
FaeI CATG 1 cut(s) 82
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 493
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 5 cut(s) 189, 336, 357, 644, 744
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 189, 336, 357, 644, 744
FspBI CTAG 1 cut(s) 299
GlaI GCGC 4 cut(s) 399, 490, 663, 699
GluI GCNGC 5 cut(s) 189, 336, 357, 644, 744
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 5 cut(s) 234, 297, 381, 605, 743
HapII CCGG 2 cut(s) 492, 638
HgaI GACGC 1 cut(s) 389
HhaI GCGC 4 cut(s) 400, 491, 664, 700
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 4 cut(s) 398, 489, 662, 698
HinP1I GCGC 4 cut(s) 398, 489, 662, 698
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 2 cut(s) 423, 649
HpaII CCGG 2 cut(s) 492, 638
HphI GGTGA 2 cut(s) 334, 605
Hpy166II GTNNAC 2 cut(s) 156, 376
Hpy188I TCNGA 2 cut(s) 457, 726
Hpy188III TCNNGA 7 cut(s) 37, 79, 227, 404, 533, 653, 730
Hpy8I GTNNAC 2 cut(s) 156, 376
HpyAV CCTTC 3 cut(s) 470, 532, 733
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 3 cut(s) 129, 158, 717
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 249, 309, 356
HpyF3I CTNAG 4 cut(s) 360, 505, 561, 723
HpySE526I ACGT 3 cut(s) 129, 158, 717
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 4 cut(s) 398, 489, 662, 698
KroI GCCGGC 1 cut(s) 491
KroNI GCCGGC 1 cut(s) 493
Kzo9I GATC 1 cut(s) 726
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 3 cut(s) 322, 343, 630
MaeI CTAG 1 cut(s) 299
MaeII ACGT 3 cut(s) 129, 158, 717
MaeIII GTNAC 3 cut(s) 130, 340, 567
MalI GATC 1 cut(s) 728
MbiI CCGCTC 1 cut(s) 746
MboI GATC 1 cut(s) 726
MfeI CAATTG 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 5 cut(s) 22, 72, 116, 465, 760
MlyI GAGTC 1 cut(s) 432
MroNI GCCGGC 1 cut(s) 491
MseI TTAA 3 cut(s) 92, 270, 669
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 492, 638
MspR9I CCNGG 5 cut(s) 369, 410, 447, 638, 639
MunI CAATTG 1 cut(s) 22
MvaI CCWGG 3 cut(s) 369, 410, 447
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 4 cut(s) 240, 249, 309, 356
NaeI GCCGGC 1 cut(s) 493
NciI CCSGG 2 cut(s) 638, 639
NdeII GATC 1 cut(s) 726
NgoMIV GCCGGC 1 cut(s) 491
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 340
PagI TCATGA 1 cut(s) 78
PdiI GCCGGC 1 cut(s) 493
PfeI GAWTC 1 cut(s) 649
PkrI GCNGC 5 cut(s) 190, 337, 358, 645, 745
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Ppu21I YACGTR 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 3 cut(s) 367, 408, 445
PspGI CCWGG 3 cut(s) 367, 408, 445
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 5 cut(s) 233, 295, 406, 480, 604
PstI CTGCAG 3 cut(s) 241, 340, 648
PstNI CAGNNNCTG 2 cut(s) 227, 652
RsaI GTAC 1 cut(s) 757
RsaNI GTAC 1 cut(s) 756
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 92, 270, 669
SatI GCNGC 5 cut(s) 189, 336, 357, 644, 744
Sau3AI GATC 1 cut(s) 726
Sau96I GGNCC 5 cut(s) 233, 295, 406, 480, 604
SbfI CCTGCAGG 1 cut(s) 241
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 5 cut(s) 369, 410, 447, 638, 639
SdaI CCTGCAGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 36
SfcI CTRYAG 3 cut(s) 237, 336, 644
SinI GGWCC 2 cut(s) 406, 480
SmaI CCCGGG 1 cut(s) 639
SmlI CTYRAG 2 cut(s) 35, 533
SmoI CTYRAG 2 cut(s) 35, 533
SnaBI TACGTA 1 cut(s) 130
Sse8387I CCTGCAGG 1 cut(s) 241
Sse9I AATT 5 cut(s) 22, 72, 116, 465, 760
SsiI CCGC 2 cut(s) 189, 744
SspMI CTAG 1 cut(s) 299
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 5 cut(s) 367, 408, 445, 636, 637
StyI CCWWGG 2 cut(s) 298, 382
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 3 cut(s) 132, 161, 720
TaqI TCGA 1 cut(s) 474
TasI AATT 5 cut(s) 22, 72, 116, 465, 760
TauI GCSGC 2 cut(s) 191, 746
TfiI GAWTC 1 cut(s) 649
Tru1I TTAA 3 cut(s) 92, 270, 669
Tru9I TTAA 3 cut(s) 92, 270, 669
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 335, 356, 643
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 36, 95
TspGWI ACGGA 1 cut(s) 701
TspMI CCCGGG 1 cut(s) 637
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 406, 480
XmaI CCCGGG 1 cut(s) 637
XmaJI CCTAGG 1 cut(s) 298
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.