Rorug02G0409200

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000361
Physical Location & Seq
Forward (+)
52346532 .. 52349093
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0409200.1

Sequence Viewer

Length: 1368 bp
ATGTATTTCTATTGTTGTGGTATAAGGTTTCATTGCAGATTTATGGCACCTAAGAGAACAAAATGTATGTCTATGGAGGAGTTGATTCCACCTTCTCCTGTGAGACCAAGAAAGGGTCAGTCGCAAGCACGATCAACTAAACGTACGTCTGCTTCTGGTCAGTATAAACGGCCTAGATCTAATACTACTGGAAATCAACAAGAAGTTCAATTGGAGACACCTACAGCTACTCAATCAGAGACATCGCAGCATCATGTGTCTGAAACTAGTCAGGAGGAGCCTGTTACAACTCAATTACATGATTCAGGTCAAATTACTCAAAGAGCTAAGAAAGGTAGAGGTGCTGCTTGTGGTATGCCTGAGTGGGGAACTGGAAAACTAATTCATATTGAGTTTGATGCTAACTGGATGCCTATTAGTGAAAATGGGAAGGGATTTAGTTCACAACTTGGAATTTTGGCGCGAGATGGAGAGAAGGTTCCTCTAACATATACTTCATGGAATGCCATGCCAGACGATATTTTGGATGCCATTTGGAAAGATGTCAAGGATAATACTGATGTTCCGGATGAGTATAAACAACATTGCTTAAAGGTTGTTGGTAGTAGATGGAGGGACTGGAAGTGCCGAGTCAAGACACAATGGTATGATAAATATGAAACGGATGAGCAGCGATTAACATTCATTCCTAGTCAGGTTGTTGGAGAGCAATGGAAGATATTAGTAAAGTATTGGGGTCTTCCGCAAATAAAGGAAATGTGTGAGACAAATAAATCTAGCCGTGCACAAGGAGGAGGTGTCCCTCATAGGACCGGTCGAAAATCTTTTGCTAGACTACGAAAAGAGATGATGGAGAATGGAGAGAAAACAGATCGTGTCAGCATGTTTGTCAAAACAAGAGCAATGAAAACAAAGGATGATGATGGTCAACCAATTGAAATTCATGATGAGGAGGCTACTGCTGTTATTAGTCAATTCAATGAATATTTGGAGGAGAGGCCAGATGAACAAGATAATACTTTTCGTGAAGAGGTATTCACTAAAGTGATGGGAGAAGATGCACATGGACGTGTTCGCATGTATGGAACAGGTGTGACTCCATCTCAAGTGTTTGGTAATTCCAAAGCTTATGAGACTAATGAGAAAAGGACAATTGAGGAAATGGATAGAAAATACGAGGAAATGGAAAAGAACTATCAGACAAAGCTAGATGATCTTAAATTGAGCCATGAATCTCAATTGGGAGACATGAAATTAAAGTACGATGATGTATCGAATCGTCTCAATCTTTTGATGTCTCATGTTGGTATCCAAGTAAACCCAAGTGGAAGTACAAGTGAACAAGTTGGAGAAATATCTAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

455

Amino Acids

52.26

Weight (kDa)

6.85

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 236 - 367 9.2e-26 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccII CGCG 1 cut(s) 463
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 1 cut(s) 743
AcsI RAATTY 2 cut(s) 453, 939
AfaI GTAC 3 cut(s) 145, 1262, 1333
AfiI CCNNNNNNNGG 2 cut(s) 113, 365
AflIII ACRYGT 1 cut(s) 1069
AgeI ACCGGT 1 cut(s) 812
AgsI TTSAA 3 cut(s) 209, 938, 979
AhlI ACTAGT 1 cut(s) 266
AjiI CACGTC 1 cut(s) 1070
AleI CACNNNNGTG 1 cut(s) 1043
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 4 cut(s) 227, 326, 1127, 1207
AluI AGCT 4 cut(s) 227, 326, 1127, 1207
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 8 cut(s) 97, 209, 233, 758, 1127, 1239, 1286, 1302
Alw44I GTGCAC 1 cut(s) 783
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 2 cut(s) 170, 998
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 3 cut(s) 247, 344, 670
ApoI RAATTY 2 cut(s) 453, 939
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AsiGI ACCGGT 1 cut(s) 812
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 810
AvaII GGWCC 1 cut(s) 810
BaeGI GKGCMC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 3 cut(s) 259, 331, 682
BccI CCATC 6 cut(s) 461, 603, 844, 917, 1042, 1108
BceAI ACGGC 2 cut(s) 185, 765
BciVI GTATCC 1 cut(s) 1319
BcoDI GTCTC 8 cut(s) 97, 209, 233, 758, 1127, 1239, 1286, 1302
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 7 cut(s) 174, 267, 690, 777, 831, 1208, 1359
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 1319
BglII AGATCT 1 cut(s) 176
BisI GCNGC 3 cut(s) 248, 345, 671
BlsI GCNGC 3 cut(s) 249, 346, 672
Bme18I GGWCC 1 cut(s) 810
BmgBI CACGTC 1 cut(s) 1070
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 3 cut(s) 48, 279, 480
BmsI GCATC 5 cut(s) 259, 388, 399, 517, 1048
BpiI GAAGAC 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 1089
BsaI GGTCTC 1 cut(s) 97
BsaWI WCCGGW 2 cut(s) 565, 812
BsaXI ACNNNNNCTCC 4 cut(s) 462, 492, 783, 813
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 365
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 4 cut(s) 193, 376, 410, 623
Bse3DI GCAATG 4 cut(s) 31, 583, 716, 909
BseAI TCCGGA 1 cut(s) 565
BseGI GGATG 5 cut(s) 414, 532, 574, 670, 922
BseLI CCNNNNNNNGG 2 cut(s) 113, 365
BseMI GCAATG 4 cut(s) 31, 583, 716, 909
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 4 cut(s) 193, 376, 410, 623
BseRI GAGGAG 5 cut(s) 92, 290, 807, 965, 1007
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 3 cut(s) 259, 331, 682
Bsh1236I CGCG 1 cut(s) 463
Bsh1285I CGRYCG 1 cut(s) 817
BshFI GGCC 2 cut(s) 172, 1000
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 812
BsiEI CGRYCG 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 787
BsiSI CCGG 2 cut(s) 566, 813
BsiWI CGTACG 1 cut(s) 143
BslFI GGGAC 2 cut(s) 629, 785
BslI CCNNNNNNNGG 2 cut(s) 113, 365
BsmAI GTCTC 8 cut(s) 97, 209, 233, 758, 1127, 1239, 1286, 1302
BsmBI CGTCTC 1 cut(s) 1286
BsmFI GGGAC 2 cut(s) 629, 785
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 2 cut(s) 172, 1000
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 787
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 4 cut(s) 131, 176, 871, 1213
BspACI CCGC 1 cut(s) 743
BspANI GGCC 2 cut(s) 172, 1000
BspCNI CTCAG 1 cut(s) 352
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 1 cut(s) 463
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 3 cut(s) 48, 279, 480
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 4 cut(s) 31, 583, 716, 909
BsrFI RCCGGY 1 cut(s) 812
BsrI ACTGG 4 cut(s) 193, 376, 410, 623
BssAI RCCGGY 1 cut(s) 812
BssMI GATC 4 cut(s) 131, 176, 871, 1213
Bst6I CTCTTC 1 cut(s) 1023
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 51, 327, 360
BstF5I GGATG 5 cut(s) 414, 532, 574, 670, 922
BstFNI CGCG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 4 cut(s) 134, 179, 874, 1216
BstMAI GTCTC 8 cut(s) 97, 209, 233, 758, 1127, 1239, 1286, 1302
BstMBI GATC 4 cut(s) 131, 176, 871, 1213
BstMCI CGRYCG 1 cut(s) 817
BstNSI RCATGY 2 cut(s) 886, 1081
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 3 cut(s) 259, 331, 682
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 1319
BsuRI GGCC 2 cut(s) 172, 1000
BtgZI GCGATG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 1070
BtsCI GGATG 5 cut(s) 414, 532, 574, 670, 922
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 943
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 812
Cfr13I GGNCC 1 cut(s) 810
Csp6I GTAC 3 cut(s) 144, 1261, 1332
CspAI ACCGGT 1 cut(s) 812
CviQI GTAC 3 cut(s) 144, 1261, 1332
DdeI CTNAG 3 cut(s) 51, 327, 360
DpnI GATC 4 cut(s) 133, 178, 873, 1215
DpnII GATC 4 cut(s) 131, 176, 871, 1213
Eam1104I CTCTTC 1 cut(s) 1023
EarI CTCTTC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 810
Esp3I CGTCTC 1 cut(s) 1286
FaqI GGGAC 2 cut(s) 629, 785
Fnu4HI GCNGC 3 cut(s) 248, 345, 671
FokI GGATG 5 cut(s) 421, 539, 581, 677, 929
Fsp4HI GCNGC 3 cut(s) 248, 345, 671
FspBI CTAG 7 cut(s) 174, 267, 690, 777, 831, 1208, 1359
GlaI GCGC 1 cut(s) 462
GluI GCNGC 3 cut(s) 248, 345, 671
HaeIII GGCC 2 cut(s) 172, 1000
HapII CCGG 2 cut(s) 566, 813
HhaI GCGC 1 cut(s) 463
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 1 cut(s) 929
HindII GTYRAC 1 cut(s) 929
HindIII AAGCTT 1 cut(s) 1125
HinfI GANTC 6 cut(s) 85, 302, 630, 1096, 1232, 1276
HpaII CCGG 2 cut(s) 566, 813
Hpy166II GTNNAC 5 cut(s) 443, 785, 929, 1318, 1340
Hpy188I TCNGA 3 cut(s) 238, 262, 1200
Hpy188III TCNNGA 5 cut(s) 272, 566, 634, 944, 1025
Hpy8I GTNNAC 5 cut(s) 443, 785, 929, 1318, 1340
HpyAV CCTTC 3 cut(s) 102, 424, 469
HpyCH4IV ACGT 3 cut(s) 142, 146, 1069
HpyCH4V TGCA 3 cut(s) 36, 785, 1061
HpyF3I CTNAG 3 cut(s) 51, 327, 360
HpySE526I ACGT 3 cut(s) 142, 146, 1069
HspAI GCGC 1 cut(s) 461
Kpn2I TCCGGA 1 cut(s) 565
Kzo9I GATC 4 cut(s) 131, 176, 871, 1213
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 3 cut(s) 259, 331, 682
LweI GCATC 5 cut(s) 259, 388, 399, 517, 1048
MaeI CTAG 7 cut(s) 174, 267, 690, 777, 831, 1208, 1359
MaeII ACGT 3 cut(s) 142, 146, 1069
MaeIII GTNAC 2 cut(s) 283, 1093
MalI GATC 4 cut(s) 133, 178, 873, 1215
MboI GATC 4 cut(s) 131, 176, 871, 1213
MboII GAAGA 4 cut(s) 727, 731, 1040, 1067
MfeI CAATTG 4 cut(s) 209, 933, 1152, 1238
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 787
MlyI GAGTC 2 cut(s) 639, 1090
MmeI TCCRAC 2 cut(s) 682, 1327
MroI TCCGGA 1 cut(s) 565
MseI TTAA 4 cut(s) 590, 677, 1218, 1256
MslI CAYNNNNRTG 2 cut(s) 1043, 1068
MspI CCGG 2 cut(s) 566, 813
MunI CAATTG 4 cut(s) 209, 933, 1152, 1238
Mva1269I GAATGC 1 cut(s) 508
MvnI CGCG 1 cut(s) 463
NdeII GATC 4 cut(s) 131, 176, 871, 1213
NlaIV GGNNCC 3 cut(s) 48, 279, 480
NmeAIII GCCGAG 1 cut(s) 653
NmuCI GTSAC 1 cut(s) 1093
NspI RCATGY 2 cut(s) 886, 1081
OliI CACNNNNGTG 1 cut(s) 1043
PagI TCATGA 1 cut(s) 943
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 4 cut(s) 85, 302, 1232, 1276
Pfl23II CGTACG 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 812
PkrI GCNGC 3 cut(s) 249, 346, 672
PleI GAGTC 2 cut(s) 638, 1090
PpsI GAGTC 2 cut(s) 638, 1090
PspLI CGTACG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 48, 279, 480
PspPI GGNCC 1 cut(s) 810
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 3 cut(s) 145, 1262, 1333
RsaNI GTAC 3 cut(s) 144, 1261, 1332
RseI CAYNNNNRTG 2 cut(s) 1043, 1068
SaqAI TTAA 4 cut(s) 590, 677, 1218, 1256
SatI GCNGC 3 cut(s) 248, 345, 671
Sau3AI GATC 4 cut(s) 131, 176, 871, 1213
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 2 cut(s) 639, 1090
SduI GDGCHC 1 cut(s) 787
SfaNI GCATC 5 cut(s) 259, 388, 399, 517, 1048
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 810
SmiMI CAYNNNNRTG 2 cut(s) 1043, 1068
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
SpeI ACTAGT 1 cut(s) 266
SsiI CCGC 1 cut(s) 743
SspI AATATT 1 cut(s) 986
SspMI CTAG 7 cut(s) 174, 267, 690, 777, 831, 1208, 1359
TaiI ACGT 3 cut(s) 145, 149, 1072
TaqI TCGA 2 cut(s) 817, 1274
TatI WGTACW 1 cut(s) 1331
TfiI GAWTC 4 cut(s) 85, 302, 1232, 1276
Tru1I TTAA 4 cut(s) 590, 677, 1218, 1256
Tru9I TTAA 4 cut(s) 590, 677, 1218, 1256
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 3 cut(s) 247, 344, 670
Tsp45I GTSAC 1 cut(s) 1093
TspGWI ACGGA 1 cut(s) 677
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 810
XapI RAATTY 2 cut(s) 453, 939
XceI RCATGY 2 cut(s) 886, 1081
XspI CTAG 7 cut(s) 174, 267, 690, 777, 831, 1208, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.