Rmu_sc0004359.1_g000003

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004359.1
OG0000361
Physical Location & Seq
Forward (+)
20648 .. 21283
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004359.1_g000003.1.cds

Sequence Viewer

Length: 636 bp
atgacgatcttctttttgttcttcatctgttctcacattccctcatcatcctttgctgctgtgcaagacttttgtgttgcagactacacagctccttctggacctgcaggctactcctgcaaaaggcccgaaactgttacagtgaatgattttgtatactcgggcctaggagtttccggtaacacctcaaaccttttcagagttggagatatccctgcatatgttgatcaagtcccgggtttgaatggcctcggcatttcaatggctcgagtagacatagctcccggtggtgttgtcccattacacattcaccgcggagctacagaagtgttccttgttgtacaaggaacactagttgctggtttcatttcctcggatcggaacacagtttatataacaactattaagagtggtgatattatggttttccctcaagggttattgcacttccaagtgaatattggagctactcgagtcgttggatatgctagctacagtagtcaaagtccaggtctgcagattctggactatgcactatttcaaggtaactttcctactcgattgatagctcgcactactttccttgacattcttgagatatggaagcttaagtttatctttggtggtactaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

211

Amino Acids

22.75

Weight (kDa)

6.39

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
AccI GTMKAC 2 cut(s) 156, 273
AccII CGCG 1 cut(s) 315
AciI CCGC 2 cut(s) 313, 315
AclWI GGATC 1 cut(s) 384
AfaI GTAC 2 cut(s) 342, 628
AfiI CCNNNNNNNGG 2 cut(s) 123, 378
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 3 cut(s) 244, 261, 542
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 7 cut(s) 92, 281, 320, 467, 492, 569, 607
AluI AGCT 7 cut(s) 92, 281, 320, 467, 492, 569, 607
AlwI GGATC 1 cut(s) 384
AlwNI CAGNNNCTG 1 cut(s) 523
Ama87I CYCGRG 4 cut(s) 160, 235, 267, 471
AoxI GGCC 3 cut(s) 125, 163, 247
ApeKI GCWGC 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 496, 528
AspA2I CCTAGG 1 cut(s) 166
AspS9I GGNCC 3 cut(s) 101, 126, 163
AsuC2I CCSGG 3 cut(s) 236, 237, 285
AsuHPI GGTGA 2 cut(s) 302, 425
AsuNHI GCTAGC 1 cut(s) 488
AvaI CYCGRG 4 cut(s) 160, 235, 267, 471
AvaII GGWCC 1 cut(s) 101
AvrII CCTAGG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 510
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 3 cut(s) 236, 237, 285
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 3 cut(s) 167, 353, 489
BfmI CTRYAG 4 cut(s) 105, 321, 493, 515
BfrI CTTAAG 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 57
BlnI CCTAGG 1 cut(s) 166
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 4 cut(s) 236, 237, 285, 510
Bme18I GGWCC 1 cut(s) 101
BmeT110I CYCGRG 4 cut(s) 160, 235, 267, 471
BmgT120I GGNCC 3 cut(s) 101, 126, 163
BmrFI CCNGG 4 cut(s) 236, 237, 285, 510
BmtI GCTAGC 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 417, 614
BpuMI CCSGG 3 cut(s) 236, 237, 285
BsaJI CCNNGG 5 cut(s) 166, 235, 250, 313, 372
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 378
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 5 cut(s) 166, 235, 250, 313, 372
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 123, 378
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 127, 165, 249
BsiHKCI CYCGRG 4 cut(s) 160, 235, 267, 471
BsiSI CCGG 3 cut(s) 177, 236, 285
BslFI GGGAC 2 cut(s) 218, 281
BslI CCNNNNNNNGG 2 cut(s) 123, 378
BsmFI GGGAC 2 cut(s) 218, 281
BsnI GGCC 3 cut(s) 127, 165, 249
BsoBI CYCGRG 4 cut(s) 160, 235, 267, 471
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 3 cut(s) 6, 226, 376
BspACI CCGC 2 cut(s) 313, 315
BspANI GGCC 3 cut(s) 127, 165, 249
BspFNI CGCG 1 cut(s) 315
BspMAI CTGCAG 2 cut(s) 109, 519
BspMI ACCTGC 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 608
BsrGI TGTACA 1 cut(s) 340
BssECI CCNNGG 5 cut(s) 166, 235, 250, 313, 372
BssMI GATC 3 cut(s) 6, 226, 376
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 4 cut(s) 136, 142, 388, 497
BstAFI CTTAAG 1 cut(s) 608
BstAUI TGTACA 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 109, 490, 571
BstDSI CCRYGG 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 315
BstKTI GATC 3 cut(s) 9, 229, 379
BstMBI GATC 3 cut(s) 6, 226, 376
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 4 cut(s) 234, 235, 283, 508
BstSFI CTRYAG 4 cut(s) 105, 321, 493, 515
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 127, 165, 249
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 109, 490, 571
CaiI CAGNNNCTG 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 101, 126, 163
Cfr42I CCGCGG 1 cut(s) 316
Cfr9I CCCGGG 1 cut(s) 235
Csp6I GTAC 2 cut(s) 341, 627
CviQI GTAC 2 cut(s) 341, 627
DpnI GATC 3 cut(s) 8, 228, 378
DpnII GATC 3 cut(s) 6, 226, 376
Eco130I CCWWGG 1 cut(s) 166
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 101
Eco88I CYCGRG 4 cut(s) 160, 235, 267, 471
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 508
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FalI AAGNNNNNCTT 4 cut(s) 318, 350, 602, 634
FaqI GGGAC 2 cut(s) 218, 281
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 2 cut(s) 156, 273
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 3 cut(s) 167, 353, 489
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 3 cut(s) 127, 165, 249
HapII CCGG 3 cut(s) 177, 236, 285
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 2 cut(s) 474, 520
HpaII CCGG 3 cut(s) 177, 236, 285
HphI GGTGA 2 cut(s) 302, 425
Hpy166II GTNNAC 2 cut(s) 157, 274
Hpy188I TCNGA 3 cut(s) 200, 376, 381
Hpy188III TCNNGA 3 cut(s) 99, 524, 593
Hpy8I GTNNAC 2 cut(s) 157, 274
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 4 cut(s) 136, 142, 388, 497
HpyCH4V TGCA 8 cut(s) 64, 80, 107, 120, 218, 445, 517, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 226
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 3 cut(s) 6, 226, 376
LmnI GCTCC 4 cut(s) 97, 286, 317, 464
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 3 cut(s) 167, 353, 489
MaeIII GTNAC 3 cut(s) 136, 179, 545
MalI GATC 3 cut(s) 8, 228, 378
MboI GATC 3 cut(s) 6, 226, 376
MboII GAAGA 1 cut(s) 13
MluCI AATT 1 cut(s) 631
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 2 cut(s) 184, 460
MnlI CCTC 5 cut(s) 52, 196, 260, 382, 441
MseI TTAA 3 cut(s) 405, 609, 634
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 315
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 3 cut(s) 177, 236, 285
MspR9I CCNGG 4 cut(s) 236, 237, 285, 510
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 3 cut(s) 236, 237, 285
NdeI CATATG 1 cut(s) 220
NdeII GATC 3 cut(s) 6, 226, 376
NheI GCTAGC 1 cut(s) 488
NmeAIII GCCGAG 1 cut(s) 231
PaeR7I CTCGAG 2 cut(s) 267, 471
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspPI GGNCC 3 cut(s) 101, 126, 163
PspXI VCTCGAGB 2 cut(s) 267, 471
PstI CTGCAG 2 cut(s) 109, 519
PstNI CAGNNNCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 342, 628
RsaNI GTAC 2 cut(s) 341, 627
RseI CAYNNNNRTG 1 cut(s) 260
SacII CCGCGG 1 cut(s) 316
SaqAI TTAA 3 cut(s) 405, 609, 634
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 3 cut(s) 6, 226, 376
Sau96I GGNCC 3 cut(s) 101, 126, 163
SbfI CCTGCAGG 1 cut(s) 109
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 4 cut(s) 236, 237, 285, 510
SdaI CCTGCAGG 1 cut(s) 109
SfcI CTRYAG 4 cut(s) 105, 321, 493, 515
Sfr274I CTCGAG 2 cut(s) 267, 471
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
SinI GGWCC 1 cut(s) 101
SlaI CTCGAG 2 cut(s) 267, 471
SmaI CCCGGG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 5 cut(s) 267, 432, 471, 593, 608
SmoI CTYRAG 5 cut(s) 267, 432, 471, 593, 608
SpeI ACTAGT 1 cut(s) 352
Sse8387I CCTGCAGG 1 cut(s) 109
Sse9I AATT 1 cut(s) 631
SsiI CCGC 2 cut(s) 313, 315
SspI AATATT 1 cut(s) 460
SspMI CTAG 3 cut(s) 167, 353, 489
StyD4I CCNGG 4 cut(s) 234, 235, 283, 508
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 4 cut(s) 136, 142, 388, 497
TaqI TCGA 3 cut(s) 268, 472, 559
TasI AATT 1 cut(s) 631
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 3 cut(s) 405, 609, 634
Tru9I TTAA 3 cut(s) 405, 609, 634
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 13, 355
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 1 cut(s) 147
Vha464I CTTAAG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XhoI CTCGAG 2 cut(s) 267, 471
XmaI CCCGGG 1 cut(s) 235
XmaJI CCTAGG 1 cut(s) 166
XmiI GTMKAC 2 cut(s) 156, 273
XspI CTAG 3 cut(s) 167, 353, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.