Rmu_sc0006422.1_g000015

Auxin-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
Physical Location & Seq
Forward (+)
65198 .. 67233
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006422.1_g000015.1.cds

Sequence Viewer

Length: 1095 bp
atgattttccctatctttttcacatttgttctcctcctttccatttccgatgccgcagtgcaggacttctgtgttgcagactacaaggctccagaaggccctgcaggctactcctgcaagaaggctgcaaaagttaccgtagatgactttgtattctctggcctaggtgttgctggtaacaccacaaacattatcaaagctgcagtcaccccagcatttgctgctcaatttcctggtgttaacggccttggcatttcgctggctcgtctagacctggctcctggtggagttatcccatttcacacacaccctggagcttcagaagtcttgattgttacgcaaggaaccataattgccgggttcatttcatcagctaacacagtttatctgaaaacccttaagatgggagatcttatggtgttccctcaagggttattgcactttcaagtgaatggaggtaatacttcagcaattgccttccctagcttcagcagtccaagccccggtctgcagattctggactttgcacttttccaaaacgatttgcctacatcattgatagcaatgactactttcctcgatgttgctcagatcaagaaacttaagggtgttctaggtgagctctctctctctctctccttccctccccaatggcctccagtacgcccggtctccctacgccgtcgtttctgcgcttcttcgcaggagcaggagcttcgaatctactctgtagagatggagagatctggtagaggcggcagtgatttccgagacttgcttcggagatccttaggaggtccgatttcattcttgagcttttcgatgcctatggatttgaatgttgtttcggcggtggaggagtcggcggggacggtggcgattctggtagtggagtcgaagtggcgctcgcggcgaacgttgtcctctaattttttctgggcgcggcgtcgctggttgaatttctcgaaggttcgacactttgacatacttgtcgttgcattttgcattgccatttgcataaaagtctcacggagcctctcgcctttacttctggactatgcattatgtatatgtacagacgtacttcctccatag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

39.49

Weight (kDa)

8.98

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 989
AccII CGCG 2 cut(s) 910, 943
AciI CCGC 6 cut(s) 54, 756, 851, 866, 910, 943
AclI AACGTT 1 cut(s) 917
AclWI GGATC 1 cut(s) 780
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 3 cut(s) 303, 450, 472
AcyI GRCGYC 1 cut(s) 946
AfaI GTAC 3 cut(s) 663, 1075, 1083
AfiI CCNNNNNNNGG 2 cut(s) 403, 503
AflII CTTAAG 2 cut(s) 398, 602
AgsI TTSAA 3 cut(s) 446, 838, 958
AjnI CCWGG 4 cut(s) 232, 273, 280, 310
AluBI AGCT 7 cut(s) 200, 317, 374, 486, 622, 715, 816
AluI AGCT 7 cut(s) 200, 317, 374, 486, 622, 715, 816
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 3 cut(s) 676, 765, 1030
AlwI GGATC 1 cut(s) 780
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 4 cut(s) 97, 160, 244, 653
ApeKI GCWGC 3 cut(s) 125, 200, 221
ApoI RAATTY 1 cut(s) 958
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 3 cut(s) 695, 906, 943
AspS9I GGNCC 2 cut(s) 98, 797
AsuC2I CCSGG 3 cut(s) 358, 504, 668
AsuHPI GGTGA 2 cut(s) 199, 629
AsuII TTCGAA 1 cut(s) 718
AvaII GGWCC 1 cut(s) 797
AvrII CCTAGG 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 790
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 3 cut(s) 112, 187, 208
BccI CCATC 2 cut(s) 397, 730
BceAI ACGGC 2 cut(s) 259, 666
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 4 cut(s) 234, 275, 282, 312
BcnI CCSGG 3 cut(s) 358, 504, 668
BcoDI GTCTC 3 cut(s) 676, 765, 1030
BfaI CTAG 4 cut(s) 164, 269, 483, 614
BfmI CTRYAG 4 cut(s) 102, 201, 509, 729
BfoI RGCGCY 1 cut(s) 907
BfrI CTTAAG 2 cut(s) 398, 602
BglI GCCNNNNNGGC 1 cut(s) 105
BglII AGATCT 2 cut(s) 409, 743
BisI GCNGC 7 cut(s) 54, 126, 201, 222, 757, 911, 944
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 7 cut(s) 55, 127, 202, 223, 758, 912, 945
Bme1390I CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 668
Bme18I GGWCC 1 cut(s) 797
BmgT120I GGNCC 2 cut(s) 98, 797
BmiI GGNNCC 4 cut(s) 90, 279, 346, 1034
BmrFI CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 668
BmsI GCATC 2 cut(s) 40, 813
BpmI CTGGAG 3 cut(s) 75, 333, 642
Bpu14I TTCGAA 1 cut(s) 718
BpuEI CTTGAG 2 cut(s) 411, 832
BpuMI CCSGG 3 cut(s) 358, 504, 668
BsaHI GRCGYC 1 cut(s) 946
BsaI GGTCTC 1 cut(s) 676
BsaJI CCNNGG 4 cut(s) 163, 247, 310, 502
BsaXI ACNNNNNCTCC 2 cut(s) 884, 914
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 503
Bse1I ACTGG 1 cut(s) 659
Bse21I CCTNAGG 1 cut(s) 790
Bse3DI GCAATG 2 cut(s) 570, 1005
BseBI CCWGG 4 cut(s) 234, 275, 282, 312
BseDI CCNNGG 4 cut(s) 163, 247, 310, 502
BseLI CCNNNNNNNGG 2 cut(s) 403, 503
BseMI GCAATG 2 cut(s) 570, 1005
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 2 cut(s) 23, 872
BseXI GCAGC 3 cut(s) 112, 187, 208
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 80
Bsh1236I CGCG 2 cut(s) 910, 943
BshFI GGCC 4 cut(s) 99, 162, 246, 655
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 3 cut(s) 357, 504, 668
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 2 cut(s) 403, 503
BsmAI GTCTC 3 cut(s) 676, 765, 1030
BsmFI GGGAC 1 cut(s) 883
BsnI GGCC 4 cut(s) 99, 162, 246, 655
Bso31I GGTCTC 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 718
Bsp1286I GDGCHC 1 cut(s) 624
Bsp1407I TGTACA 1 cut(s) 1073
Bsp143I GATC 4 cut(s) 409, 591, 743, 785
BspACI CCGC 6 cut(s) 54, 756, 851, 866, 910, 943
BspANI GGCC 4 cut(s) 99, 162, 246, 655
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 2 cut(s) 910, 943
BspLI GGNNCC 4 cut(s) 90, 279, 346, 1034
BspMAI CTGCAG 3 cut(s) 106, 205, 513
BspPI GGATC 1 cut(s) 780
BspT104I TTCGAA 1 cut(s) 718
BspTI CTTAAG 2 cut(s) 398, 602
BspTNI GGTCTC 1 cut(s) 676
BsrDI GCAATG 2 cut(s) 570, 1005
BsrGI TGTACA 1 cut(s) 1073
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 4 cut(s) 163, 247, 310, 502
BssMI GATC 4 cut(s) 409, 591, 743, 785
BssNI GRCGYC 1 cut(s) 946
BssT1I CCWWGG 2 cut(s) 163, 247
Bst2UI CCWGG 4 cut(s) 234, 275, 282, 312
Bst4CI ACNGT 3 cut(s) 139, 382, 874
BstACI GRCGYC 1 cut(s) 946
BstAFI CTTAAG 2 cut(s) 398, 602
BstAPI GCANNNNNTGC 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 1073
BstBI TTCGAA 1 cut(s) 718
BstC8I GCNNGC 3 cut(s) 106, 261, 908
BstDEI CTNAG 2 cut(s) 588, 790
BstFNI CGCG 2 cut(s) 910, 943
BstH2I RGCGCY 1 cut(s) 907
BstHHI GCGC 3 cut(s) 695, 906, 943
BstKTI GATC 4 cut(s) 412, 594, 746, 788
BstMAI GTCTC 3 cut(s) 676, 765, 1030
BstMBI GATC 4 cut(s) 409, 591, 743, 785
BstMWI GCNNNNNNNGC 5 cut(s) 105, 114, 221, 498, 910
BstNI CCWGG 4 cut(s) 234, 275, 282, 312
BstSCI CCNGG 7 cut(s) 232, 273, 280, 310, 356, 502, 666
BstSFI CTRYAG 4 cut(s) 102, 201, 509, 729
BstUI CGCG 2 cut(s) 910, 943
BstV1I GCAGC 3 cut(s) 112, 187, 208
BstX2I RGATCY 3 cut(s) 409, 743, 785
BstYI RGATCY 3 cut(s) 409, 743, 785
Bsu36I CCTNAGG 1 cut(s) 790
BsuRI GGCC 4 cut(s) 99, 162, 246, 655
BtsI GCAGTG 2 cut(s) 63, 766
BtsIMutI CAGTG 2 cut(s) 63, 766
Cac8I GCNNGC 3 cut(s) 106, 261, 908
CaiI CAGNNNCTG 1 cut(s) 517
CfoI GCGC 3 cut(s) 695, 906, 943
Cfr13I GGNCC 2 cut(s) 98, 797
CseI GACGC 1 cut(s) 935
Csp6I GTAC 3 cut(s) 662, 1074, 1082
CviQI GTAC 3 cut(s) 662, 1074, 1082
DdeI CTNAG 2 cut(s) 588, 790
DpnI GATC 4 cut(s) 411, 593, 745, 787
DpnII GATC 4 cut(s) 409, 591, 743, 785
DrdI GACNNNNNNGTC 1 cut(s) 989
DseDI GACNNNNNNGTC 1 cut(s) 989
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 2 cut(s) 163, 247
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 797
Eco53kI GAGCTC 1 cut(s) 622
Eco57I CTGAAG 3 cut(s) 303, 450, 472
Eco81I CCTNAGG 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 4 cut(s) 232, 273, 280, 310
EcoT14I CCWWGG 2 cut(s) 163, 247
EcoT22I ATGCAT 1 cut(s) 1063
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 2 cut(s) 163, 247
FaqI GGGAC 1 cut(s) 883
FauI CCCGC 1 cut(s) 859
Fnu4HI GCNGC 7 cut(s) 54, 126, 201, 222, 757, 911, 944
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 7 cut(s) 54, 126, 201, 222, 757, 911, 944
FspBI CTAG 4 cut(s) 164, 269, 483, 614
GlaI GCGC 3 cut(s) 694, 905, 942
GluI GCNGC 7 cut(s) 54, 126, 201, 222, 757, 911, 944
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 3 cut(s) 75, 333, 642
HaeII RGCGCY 1 cut(s) 907
HaeIII GGCC 4 cut(s) 99, 162, 246, 655
HapII CCGG 3 cut(s) 357, 504, 668
HgaI GACGC 1 cut(s) 935
HhaI GCGC 3 cut(s) 695, 906, 943
Hin1I GRCGYC 1 cut(s) 946
Hin6I GCGC 3 cut(s) 693, 904, 941
HinP1I GCGC 3 cut(s) 693, 904, 941
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 5 cut(s) 514, 720, 860, 880, 893
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 3 cut(s) 357, 504, 668
HphI GGTGA 2 cut(s) 199, 629
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 7 cut(s) 49, 322, 390, 591, 770, 783, 801
Hpy188III TCNNGA 8 cut(s) 92, 269, 328, 518, 595, 811, 964, 1052
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 2 cut(s) 687, 951
HpyAV CCTTC 5 cut(s) 89, 115, 487, 649, 961
HpyCH4III ACNGT 3 cut(s) 139, 382, 874
HpyCH4IV ACGT 2 cut(s) 917, 1080
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 114, 221, 498, 910
HpyF3I CTNAG 2 cut(s) 588, 790
HpySE526I ACGT 2 cut(s) 917, 1080
Hsp92I GRCGYC 1 cut(s) 946
HspAI GCGC 3 cut(s) 693, 904, 941
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 4 cut(s) 409, 591, 743, 785
LmnI GCTCC 6 cut(s) 94, 283, 314, 706, 712, 1032
Lsp1109I GCAGC 3 cut(s) 112, 187, 208
LweI GCATC 2 cut(s) 40, 813
MaeI CTAG 4 cut(s) 164, 269, 483, 614
MaeII ACGT 2 cut(s) 917, 1080
MaeIII GTNAC 4 cut(s) 133, 176, 205, 334
MalI GATC 4 cut(s) 411, 593, 745, 787
MboI GATC 4 cut(s) 409, 591, 743, 785
MboII GAAGA 1 cut(s) 690
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 3 cut(s) 409, 743, 785
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 5 cut(s) 227, 351, 471, 928, 958
MlyI GAGTC 2 cut(s) 869, 902
Mph1103I ATGCAT 1 cut(s) 1063
MseI TTAA 3 cut(s) 240, 399, 603
MspCI CTTAAG 2 cut(s) 398, 602
MspI CCGG 3 cut(s) 357, 504, 668
MspR9I CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 668
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 4 cut(s) 234, 275, 282, 312
MvnI CGCG 2 cut(s) 910, 943
MwoI GCNNNNNNNGC 5 cut(s) 105, 114, 221, 498, 910
NciI CCSGG 3 cut(s) 358, 504, 668
NdeII GATC 4 cut(s) 409, 591, 743, 785
NlaIV GGNNCC 4 cut(s) 90, 279, 346, 1034
NmuCI GTSAC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 1063
NspV TTCGAA 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 914
PfeI GAWTC 3 cut(s) 514, 720, 880
PkrI GCNGC 7 cut(s) 55, 127, 202, 223, 758, 912, 945
PleI GAGTC 2 cut(s) 868, 901
PpsI GAGTC 2 cut(s) 868, 901
Psp124BI GAGCTC 1 cut(s) 624
Psp1406I AACGTT 1 cut(s) 917
Psp6I CCWGG 4 cut(s) 232, 273, 280, 310
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 4 cut(s) 232, 273, 280, 310
PspN4I GGNNCC 4 cut(s) 90, 279, 346, 1034
PspPI GGNCC 2 cut(s) 98, 797
PstI CTGCAG 3 cut(s) 106, 205, 513
PstNI CAGNNNCTG 1 cut(s) 517
PsuI RGATCY 3 cut(s) 409, 743, 785
RsaI GTAC 3 cut(s) 663, 1075, 1083
RsaNI GTAC 3 cut(s) 662, 1074, 1082
SacI GAGCTC 1 cut(s) 624
SaqAI TTAA 3 cut(s) 240, 399, 603
SatI GCNGC 7 cut(s) 54, 126, 201, 222, 757, 911, 944
Sau3AI GATC 4 cut(s) 409, 591, 743, 785
Sau96I GGNCC 2 cut(s) 98, 797
SbfI CCTGCAGG 1 cut(s) 106
SchI GAGTC 2 cut(s) 869, 902
ScrFI CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 668
SdaI CCTGCAGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 2 cut(s) 40, 813
SfcI CTRYAG 4 cut(s) 102, 201, 509, 729
SfuI TTCGAA 1 cut(s) 718
SinI GGWCC 1 cut(s) 797
SmlI CTYRAG 4 cut(s) 398, 426, 602, 811
SmoI CTYRAG 4 cut(s) 398, 426, 602, 811
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 5 cut(s) 227, 351, 471, 928, 958
SsiI CCGC 6 cut(s) 54, 756, 851, 866, 910, 943
SspMI CTAG 4 cut(s) 164, 269, 483, 614
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 7 cut(s) 232, 273, 280, 310, 356, 502, 666
StyI CCWWGG 2 cut(s) 163, 247
TaaI ACNGT 3 cut(s) 139, 382, 874
TaiI ACGT 2 cut(s) 920, 1083
TaqI TCGA 6 cut(s) 579, 718, 821, 896, 965, 973
TasI AATT 5 cut(s) 227, 351, 471, 928, 958
TatI WGTACW 1 cut(s) 1073
TauI GCSGC 4 cut(s) 56, 759, 913, 946
TfiI GAWTC 3 cut(s) 514, 720, 880
Tru1I TTAA 3 cut(s) 240, 399, 603
Tru9I TTAA 3 cut(s) 240, 399, 603
TscAI CASTG 2 cut(s) 63, 766
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 3 cut(s) 125, 200, 221
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 352, 357, 795
TspGWI ACGGA 1 cut(s) 1045
TspRI CASTG 2 cut(s) 63, 766
Vha464I CTTAAG 2 cut(s) 398, 602
VpaK11BI GGWCC 1 cut(s) 797
XapI RAATTY 1 cut(s) 958
XbaI TCTAGA 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 4 cut(s) 164, 269, 483, 614
Zsp2I ATGCAT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.