RLG00000003674

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000361
Physical Location & Seq
Forward (+)
51474103 .. 51474588
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003674

Sequence Viewer

Length: 486 bp
ATGAGCAAGTTGATCATGATGAGGACGTCTTTCCCTATTTTCTTTGTGTTGTCTCTCATTCCCTCTTCCTCCTATGCTGCTGCGCAAGACTTGTGTGTTGCAGACTACACAGCGCCTCATGGCCCCGCAGGCTACTCTTGCAAAAATCCTGCAAATGTTACGGTAGATGATTTCGTCTACTCTGCCTTAGGAGTTCCTTGTAACACCTCAAATATGATCAAAGCCGGAGTCACCACAGCATTTTCTTCTCAATTCCCTGGTTTGAATGACCTTGGCGTTGCACTAGCTCGCGCAGACTTGGCTGTTGGTGGAGTTGTCCCAATGCACACACACCATGGAGCTTCAGAAATTGTACTTGTTATTGAAGGAACCCTAACCACCGGGTTCATTTCCTCAGATAACAAAGTTTATCTAAAAACTCTTAAGAAGGGTGACATTCATGGTTATCCCTCAAGGGCTGTTGCACTTCCAAGTGAATGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

162

Amino Acids

16.99

Weight (kDa)

6.48

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 64 - 150 2.5e-19 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
Acc16I TGCGCA 1 cut(s) 84
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 354
AflII CTTAAG 1 cut(s) 422
AgsI TTSAA 2 cut(s) 265, 365
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 2 cut(s) 287, 341
AluI AGCT 2 cut(s) 287, 341
Alw26I GTCTC 1 cut(s) 57
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 77, 80
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 3 cut(s) 85, 115, 293
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 223, 443
AxyI CCTNAGG 1 cut(s) 187
BbvI GCAGC 2 cut(s) 64, 67
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 2 cut(s) 12, 216
BcnI CCSGG 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 284
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 422
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
Bme1390I CCNGG 2 cut(s) 258, 382
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 124, 370
BmrFI CCNGG 2 cut(s) 258, 382
BpuEI CTTGAG 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 382
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 256, 271, 334
Bse21I CCTNAGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 256, 271, 334
BseMII CTCAG 1 cut(s) 408
BseXI GCAGC 2 cut(s) 64, 67
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 225, 381
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 12, 216
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 407
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 124, 370
BspTI CTTAAG 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 256, 271, 334
BssMI GATC 2 cut(s) 12, 216
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 2 cut(s) 271, 334
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 130, 289
BstDEI CTNAG 2 cut(s) 187, 394
BstDSI CCRYGG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 3 cut(s) 85, 115, 293
BstKTI GATC 2 cut(s) 15, 219
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 12, 216
BstMWI GCNNNNNNNGC 3 cut(s) 129, 138, 299
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 256, 380
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 64, 67
Bsu36I CCTNAGG 1 cut(s) 187
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 130, 289
CciI TCATGA 1 cut(s) 15
CfoI GCGC 3 cut(s) 85, 115, 293
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 353
CviAII CATG 4 cut(s) 16, 119, 335, 440
CviJI RGCY 7 cut(s) 123, 132, 224, 287, 302, 341, 458
CviKI_1 RGCY 7 cut(s) 123, 132, 224, 287, 302, 341, 458
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 2 cut(s) 187, 394
DpnI GATC 2 cut(s) 14, 218
DpnII GATC 2 cut(s) 12, 216
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 271, 334
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 271, 334
ErhI CCWWGG 2 cut(s) 271, 334
FaeI CATG 4 cut(s) 19, 122, 338, 443
FaiI YATR 6 cut(s) 17, 75, 120, 215, 336, 441
FaqI GGGAC 1 cut(s) 302
FatI CATG 4 cut(s) 15, 118, 334, 439
FauI CCCGC 1 cut(s) 133
FbaI TGATCA 2 cut(s) 12, 216
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 78, 81
Fsp4HI GCNGC 2 cut(s) 78, 81
FspBI CTAG 1 cut(s) 284
FspI TGCGCA 1 cut(s) 84
GlaI GCGC 3 cut(s) 84, 114, 292
GluI GCNGC 2 cut(s) 78, 81
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 123
HapII CCGG 2 cut(s) 225, 381
HhaI GCGC 3 cut(s) 85, 115, 293
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 4 cut(s) 19, 122, 338, 443
Hin6I GCGC 3 cut(s) 83, 113, 291
HinP1I GCGC 3 cut(s) 83, 113, 291
HinfI GANTC 1 cut(s) 228
HpaII CCGG 2 cut(s) 225, 381
HphI GGTGA 2 cut(s) 223, 443
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 346, 397
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 359, 421
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 6 cut(s) 101, 141, 152, 281, 325, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 138, 299
HpyF3I CTNAG 2 cut(s) 187, 394
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 4 cut(s) 19, 122, 338, 443
HspAI GCGC 3 cut(s) 83, 113, 291
Ksp22I TGATCA 2 cut(s) 12, 216
Kzo9I GATC 2 cut(s) 12, 216
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 6 cut(s) 114, 162, 238, 243, 270, 394
Lsp1109I GCAGC 2 cut(s) 64, 67
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 4 cut(s) 157, 200, 229, 431
MalI GATC 2 cut(s) 14, 218
MboI GATC 2 cut(s) 12, 216
MboII GAAGA 2 cut(s) 57, 237
MluCI AATT 2 cut(s) 251, 348
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 7 cut(s) 15, 73, 79, 126, 217, 403, 460
MseI TTAA 1 cut(s) 423
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 2 cut(s) 225, 381
MspR9I CCNGG 2 cut(s) 258, 382
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 129, 138, 299
NciI CCSGG 1 cut(s) 382
NcoI CCATGG 1 cut(s) 334
NdeII GATC 2 cut(s) 12, 216
NlaIII CATG 4 cut(s) 19, 122, 338, 443
NlaIV GGNNCC 2 cut(s) 124, 370
NmuCI GTSAC 2 cut(s) 229, 431
NsbI TGCGCA 1 cut(s) 84
PagI TCATGA 1 cut(s) 15
PkrI GCNGC 2 cut(s) 79, 82
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 124, 370
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 78, 81
Sau3AI GATC 2 cut(s) 12, 216
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 258, 382
SetI ASST 5 cut(s) 29, 209, 273, 289, 343
SmlI CTYRAG 2 cut(s) 422, 451
SmoI CTYRAG 2 cut(s) 422, 451
Sse9I AATT 2 cut(s) 251, 348
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 256, 380
StyI CCWWGG 2 cut(s) 271, 334
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 29
TasI AATT 2 cut(s) 251, 348
TatI WGTACW 1 cut(s) 352
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseFI GTSAC 2 cut(s) 229, 431
TseI GCWGC 2 cut(s) 77, 80
Tsp45I GTSAC 2 cut(s) 229, 431
TspDTI ATGAA 2 cut(s) 376, 428
Vha464I CTTAAG 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 284
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.