RLG00000016517

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000361
Physical Location & Seq
Reverse (-)
7225805 .. 7226440
636 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016517

Sequence Viewer

Length: 636 bp
ATGGCGGTTTTCTTTATCTTTATGTTTTCTCTCATTCTGTCCTCCTCCTATGCTGCTGTGCAAGACTTTTGTGTTGCAGACTACACAGCTCCTTCCGCACCTGCAGGCTACTCCTGCAAAAGTTCTGGAACTGTTACGGTGAATGATTTTGTATACTCCGGCCTAGGCATTCCCGGTAACACCTCAAACATTTTCAGAGCTGCAAACACCCCTGCGTCCGCGGCTGAGTTTCCTGGAGTGAATGGCCTTGGCATTTCAATGTCACGTGTAGACTTGGCTGCCGGTGGTGTTGTCCCTTTGCATATACACCCCGGAGCGAATGAAGTCTTACTTGTTGCGCAAGGAACTCTAGTTGCCGGGTTCATATCCTCAGATCGCAACACAGTTTTTCTGAAAACTATTAACAGTGGTGATATTATGGTTTTCCCTCAAGGGTTATTGCACTTCCAAGTGAATGTTGGAAATGCTACGCCAGTCCTTGCATTTGCTAGCTACAGCAGTCCAAGGCCAGGTCTGCAGATTGTGGACTATGCACTATTTCAAAGCAACTTTCCTACTCAGTTGATAGCTAGCACTACTTTCCTTGGCATTCCTGAAATAAGTAGACTTAAGGCTGTCTTTGGTAGCACTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

212

Amino Acids

22.08

Weight (kDa)

6.01

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 196 1.4e-32 Cupin
Cupin_2 PF07883 89 - 160 6.9e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc16I TGCGCA 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 3 cut(s) 153, 270, 604
AccII CGCG 1 cut(s) 221
AciI CCGC 4 cut(s) 5, 96, 219, 221
AcvI CACGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 509
AflII CTTAAG 1 cut(s) 608
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 258, 542
AjnI CCWGG 2 cut(s) 232, 508
AluBI AGCT 4 cut(s) 89, 200, 492, 569
AluI AGCT 4 cut(s) 89, 200, 492, 569
AoxI GGCC 3 cut(s) 160, 244, 506
ApeKI GCWGC 3 cut(s) 53, 200, 278
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 1 cut(s) 340
AsuC2I CCSGG 3 cut(s) 174, 312, 358
AsuHPI GGTGA 2 cut(s) 151, 422
AsuNHI GCTAGC 2 cut(s) 488, 569
AvrII CCTAGG 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 266
BbvI GCAGC 3 cut(s) 40, 187, 265
BciT130I CCWGG 2 cut(s) 234, 510
BcnI CCSGG 3 cut(s) 174, 312, 358
BfaI CTAG 4 cut(s) 164, 350, 489, 570
BfmI CTRYAG 3 cut(s) 102, 493, 515
BfrI CTTAAG 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 4 cut(s) 54, 201, 222, 279
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 4 cut(s) 55, 202, 223, 280
Bme1390I CCNGG 5 cut(s) 174, 234, 312, 358, 510
BmrFI CCNGG 5 cut(s) 174, 234, 312, 358, 510
BmtI GCTAGC 2 cut(s) 492, 573
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 3 cut(s) 174, 312, 358
BsaAI YACGTR 1 cut(s) 266
BsaJI CCNNGG 6 cut(s) 163, 219, 247, 310, 503, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 473
BseBI CCWGG 2 cut(s) 234, 510
BseDI CCNNGG 6 cut(s) 163, 219, 247, 310, 503, 583
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 216, 384, 572
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 40, 187, 265
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 3 cut(s) 162, 246, 508
BsiSI CCGG 5 cut(s) 159, 174, 282, 312, 357
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 2 cut(s) 168, 588
BsnI GGCC 3 cut(s) 162, 246, 508
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 4 cut(s) 5, 96, 219, 221
BspANI GGCC 3 cut(s) 162, 246, 508
BspCNI CTCAG 3 cut(s) 217, 383, 571
BspFNI CGCG 1 cut(s) 221
BspMAI CTGCAG 2 cut(s) 106, 519
BspMI ACCTGC 1 cut(s) 109
BspOI GCTAGC 2 cut(s) 492, 573
BspTI CTTAAG 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 6 cut(s) 163, 219, 247, 310, 503, 583
BssMI GATC 1 cut(s) 373
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 4 cut(s) 163, 247, 503, 583
Bst1107I GTATAC 1 cut(s) 154
Bst2UI CCWGG 2 cut(s) 234, 510
Bst4CI ACNGT 4 cut(s) 133, 139, 385, 407
BstAFI CTTAAG 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 106, 490, 571
BstDEI CTNAG 3 cut(s) 225, 370, 558
BstDSI CCRYGG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 4 cut(s) 95, 114, 221, 514
BstNI CCWGG 2 cut(s) 234, 510
BstSCI CCNGG 5 cut(s) 172, 232, 310, 356, 508
BstSFI CTRYAG 3 cut(s) 102, 493, 515
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 40, 187, 265
BstZ17I GTATAC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 162, 246, 508
BtgI CCRYGG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 412
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 3 cut(s) 106, 490, 571
CfoI GCGC 1 cut(s) 340
Cfr10I RCCGGY 1 cut(s) 281
Cfr42I CCGCGG 1 cut(s) 222
CseI GACGC 1 cut(s) 204
DdeI CTNAG 3 cut(s) 225, 370, 558
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eco130I CCWWGG 4 cut(s) 163, 247, 503, 583
Eco72I CACGTG 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 232, 508
EcoT14I CCWWGG 4 cut(s) 163, 247, 503, 583
ErhI CCWWGG 4 cut(s) 163, 247, 503, 583
FaiI YATR 8 cut(s) 23, 51, 154, 303, 305, 365, 419, 531
FalI AAGNNNNNCTT 4 cut(s) 315, 347, 602, 634
FaqI GGGAC 1 cut(s) 278
FblI GTMKAC 3 cut(s) 153, 270, 604
Fnu4HI GCNGC 4 cut(s) 54, 201, 222, 279
Fsp4HI GCNGC 4 cut(s) 54, 201, 222, 279
FspBI CTAG 4 cut(s) 164, 350, 489, 570
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 1 cut(s) 339
GluI GCNGC 4 cut(s) 54, 201, 222, 279
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 3 cut(s) 162, 246, 508
HapII CCGG 5 cut(s) 159, 174, 282, 312, 357
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HpaII CCGG 5 cut(s) 159, 174, 282, 312, 357
HphI GGTGA 2 cut(s) 151, 422
Hpy166II GTNNAC 4 cut(s) 154, 271, 526, 605
Hpy188I TCNGA 3 cut(s) 197, 373, 393
Hpy188III TCNNGA 2 cut(s) 126, 593
Hpy8I GTNNAC 4 cut(s) 154, 271, 526, 605
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 4 cut(s) 133, 139, 385, 407
HpyCH4IV ACGT 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 114, 221, 514
HpyF3I CTNAG 3 cut(s) 225, 370, 558
HpySE526I ACGT 1 cut(s) 265
HspAI GCGC 1 cut(s) 338
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 94, 314
Lsp1109I GCAGC 3 cut(s) 40, 187, 265
MaeI CTAG 4 cut(s) 164, 350, 489, 570
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 3 cut(s) 133, 176, 261
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 5 cut(s) 52, 55, 193, 379, 438
MseI TTAA 3 cut(s) 402, 609, 634
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 5 cut(s) 159, 174, 282, 312, 357
MspR9I CCNGG 5 cut(s) 174, 234, 312, 358, 510
Mva1269I GAATGC 2 cut(s) 168, 588
MvaI CCWGG 2 cut(s) 234, 510
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 95, 114, 221, 514
NciI CCSGG 3 cut(s) 174, 312, 358
NdeII GATC 1 cut(s) 373
NheI GCTAGC 2 cut(s) 488, 569
NmuCI GTSAC 1 cut(s) 261
NsbI TGCGCA 1 cut(s) 339
PaqCI CACCTGC 1 cut(s) 109
PctI GAATGC 2 cut(s) 168, 588
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 4 cut(s) 55, 202, 223, 280
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 232, 508
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 2 cut(s) 232, 508
PstI CTGCAG 2 cut(s) 106, 519
RseI CAYNNNNRTG 1 cut(s) 257
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 3 cut(s) 402, 609, 634
SatI GCNGC 4 cut(s) 54, 201, 222, 279
Sau3AI GATC 1 cut(s) 373
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 5 cut(s) 174, 234, 312, 358, 510
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 8 cut(s) 91, 103, 185, 202, 268, 494, 514, 571
SfcI CTRYAG 3 cut(s) 102, 493, 515
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 429, 608
SmoI CTYRAG 2 cut(s) 429, 608
Sse8387I CCTGCAGG 1 cut(s) 106
SsiI CCGC 4 cut(s) 5, 96, 219, 221
SspMI CTAG 4 cut(s) 164, 350, 489, 570
StyD4I CCNGG 5 cut(s) 172, 232, 310, 356, 508
StyI CCWWGG 4 cut(s) 163, 247, 503, 583
TaaI ACNGT 4 cut(s) 133, 139, 385, 407
TaiI ACGT 1 cut(s) 268
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 402, 609, 634
Tru9I TTAA 3 cut(s) 402, 609, 634
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 3 cut(s) 53, 200, 278
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 336, 352
TspRI CASTG 1 cut(s) 412
Vha464I CTTAAG 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmaJI CCTAGG 1 cut(s) 163
XmiI GTMKAC 3 cut(s) 153, 270, 604
XspI CTAG 4 cut(s) 164, 350, 489, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.