Rorug02G0155100

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000361
Physical Location & Seq
Reverse (-)
13818503 .. 13820270
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0155100.1

Sequence Viewer

Length: 909 bp
ATGGGTCGGTCCGTGATCCAGACTCTCACGTTCTGGCTCTCGGAGCACCCATCAATCGTCGGGTTCCGGTGGTCTCACGCCAACTCCTGGGGCTCCACATGGTCCTTCCTCTTCACCGCCATCGCCCTTTACCTAACTATCTCCGTCCTCCTTCACCTCCTCCTCGCCCTCCTCCGCCGCAAGGGTCGACCCGTCCCTCTCGGACCTATCCCCGCCCTCCACTCCCTCTTCATGACCCTCCTCTCCTTCACCATCTTCGCCGGCATCACACTCTCCTCCGCCGCCGAAATCAAAGAAACCAAATGGTTCTGGCGGCGCTCCAAAACCCCCTTCCAGTGGCTCCTCTGCTTCCCCCTCGGGACCCGCCCCTCGGGTCGGGTCTTCTTCTGGTCCTACATCTACTACCTTTCCCGCTTCTTCCACATGATCCGCACATTCTTCACCATCCTCCGCCGCGGCAGATTAGTCCCCTTCCAGCTCTTCAACCACTCCATCCTCACCTTCATCTCCTTCATGTGGCTAGAATTCTCGCAGTCTTTCCAAGTGCTTGCCATACTTTCGACCACGTTGGTGTATTCTGTTGTTTATGCTTATCGGTTCTGGGTCGCAATCGGGCTGCCGCGGGCCGGCTTCGCGTTCGTGGTGAACTGCCAGATGCTGCTGCTGGGCTGCAATGTGGCCTGCCACGTTGGGGTTCTGCTGATGCATTTCATGAAAGGCGGCTGTAATGGAATCGGGGCTTGGGGTTTCAATTCGGTGCTGAATGCGGTGATTCTGTTGCTGTTCTTGAACTTCTACGTGAAGATACATTGGGGTTATGGGAGGAGGGTCGCGTTGGCTGCGGTGGAGGAGGCCAAGGCGGAGGCGGCGGCGGAGGAGGAGGAGTTGGTTAGAGTCAAGGACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

302

Amino Acids

34.62

Weight (kDa)

10.11

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 31 - 269 1.1e-38 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 87
AccI GTMKAC 1 cut(s) 187
AccII CGCG 4 cut(s) 456, 622, 635, 833
AclWI GGATC 2 cut(s) 10, 421
AcsI RAATTY 1 cut(s) 524
AfiI CCNNNNNNNGG 8 cut(s) 87, 181, 336, 370, 375, 516, 626, 691
AgsI TTSAA 3 cut(s) 484, 751, 790
AjnI CCWGG 1 cut(s) 86
AjuI GAANNNNNNNTTGG 4 cut(s) 314, 346, 724, 756
AleI CACNNNNGTG 1 cut(s) 569
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 2 cut(s) 10, 421
AlwNI CAGNNNCTG 1 cut(s) 658
Ama87I CYCGRG 2 cut(s) 356, 370
AoxI GGCC 3 cut(s) 624, 678, 852
ApeKI GCWGC 5 cut(s) 616, 658, 661, 669, 839
ApoI RAATTY 1 cut(s) 524
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 6 cut(s) 9, 102, 203, 360, 390, 624
AsuHPI GGTGA 7 cut(s) 106, 146, 241, 433, 490, 655, 781
AvaI CYCGRG 2 cut(s) 356, 370
AvaII GGWCC 5 cut(s) 9, 102, 203, 360, 390
BanII GRGCYC 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 5 cut(s) 603, 645, 648, 656, 826
BccI CCATC 5 cut(s) 58, 128, 260, 452, 500
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 5 cut(s) 9, 102, 203, 360, 390
BmeT110I CYCGRG 2 cut(s) 356, 370
BmgT120I GGNCC 6 cut(s) 9, 102, 203, 360, 390, 624
BmiI GGNNCC 5 cut(s) 65, 94, 341, 361, 362
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 3 cut(s) 273, 645, 693
BpiI GAAGAC 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 799
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 6 cut(s) 87, 355, 369, 454, 620, 855
BsaWI WCCGGW 1 cut(s) 66
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 869, 899
Bsc4I CCNNNNNNNGG 8 cut(s) 87, 181, 336, 370, 375, 516, 626, 691
Bse118I RCCGGY 2 cut(s) 260, 626
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 679
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 6 cut(s) 87, 355, 369, 454, 620, 855
BseGI GGATG 2 cut(s) 444, 492
BseLI CCNNNNNNNGG 8 cut(s) 87, 181, 336, 370, 375, 516, 626, 691
BseMI GCAATG 1 cut(s) 679
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 5 cut(s) 603, 645, 648, 656, 826
BseYI CCCAGC 1 cut(s) 664
Bsh1236I CGCG 4 cut(s) 456, 622, 635, 833
BshFI GGCC 3 cut(s) 626, 680, 854
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 2 cut(s) 356, 370
BsiSI CCGG 3 cut(s) 67, 261, 627
BslFI GGGAC 3 cut(s) 179, 373, 452
BslI CCNNNNNNNGG 8 cut(s) 87, 181, 336, 370, 375, 516, 626, 691
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 3 cut(s) 179, 373, 452
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 3 cut(s) 626, 680, 854
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 2 cut(s) 356, 370
Bsp1286I GDGCHC 2 cut(s) 48, 95
Bsp143I GATC 2 cut(s) 15, 426
BspANI GGCC 3 cut(s) 626, 680, 854
BspFNI CGCG 4 cut(s) 456, 622, 635, 833
BspHI TCATGA 2 cut(s) 231, 711
BspLI GGNNCC 5 cut(s) 65, 94, 341, 361, 362
BspPI GGATC 2 cut(s) 10, 421
BspQI GCTCTTC 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 679
BsrFI RCCGGY 2 cut(s) 260, 626
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 260, 626
BssECI CCNNGG 6 cut(s) 87, 355, 369, 454, 620, 855
BssMI GATC 2 cut(s) 15, 426
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 88
Bst6I CTCTTC 3 cut(s) 116, 233, 485
BstBAI YACGTR 1 cut(s) 799
BstC8I GCNNGC 5 cut(s) 262, 549, 624, 628, 682
BstDSI CCRYGG 2 cut(s) 454, 620
BstF5I GGATG 2 cut(s) 444, 492
BstFNI CGCG 4 cut(s) 456, 622, 635, 833
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 2 cut(s) 18, 429
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 15, 426
BstMWI GCNNNNNNNGC 4 cut(s) 43, 632, 839, 866
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstUI CGCG 4 cut(s) 456, 622, 635, 833
BstV1I GCAGC 5 cut(s) 603, 645, 648, 656, 826
BstV2I GAAGAC 1 cut(s) 373
BsuRI GGCC 3 cut(s) 626, 680, 854
BtgI CCRYGG 2 cut(s) 454, 620
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 444, 492
BtsIMutI CAGTG 1 cut(s) 341
Cac8I GCNNGC 5 cut(s) 262, 549, 624, 628, 682
CaiI CAGNNNCTG 1 cut(s) 658
CciI TCATGA 2 cut(s) 231, 711
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 2 cut(s) 260, 626
Cfr13I GGNCC 6 cut(s) 9, 102, 203, 360, 390, 624
Cfr42I CCGCGG 2 cut(s) 457, 623
CpoI CGGWCCG 1 cut(s) 9
CspI CGGWCCG 1 cut(s) 9
CviAII CATG 5 cut(s) 99, 232, 424, 514, 712
DpnI GATC 2 cut(s) 17, 428
DpnII GATC 2 cut(s) 15, 426
Eam1104I CTCTTC 3 cut(s) 116, 233, 485
EarI CTCTTC 3 cut(s) 116, 233, 485
EciI GGCGGA 5 cut(s) 164, 268, 440, 875, 887
Eco130I CCWWGG 1 cut(s) 855
Eco24I GRGCYC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 5 cut(s) 9, 102, 203, 360, 390
Eco88I CYCGRG 2 cut(s) 356, 370
EcoO109I RGGNCCY 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 855
EcoT22I ATGCAT 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 5 cut(s) 102, 235, 427, 517, 715
FaiI YATR 8 cut(s) 100, 233, 425, 515, 554, 588, 713, 819
FaqI GGGAC 3 cut(s) 179, 373, 452
FatI CATG 5 cut(s) 98, 231, 423, 513, 711
FauI CCCGC 4 cut(s) 220, 371, 419, 615
FblI GTMKAC 1 cut(s) 187
FokI GGATG 2 cut(s) 431, 479
FriOI GRGCYC 1 cut(s) 95
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 317
GsaI CCCAGC 1 cut(s) 668
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 3 cut(s) 626, 680, 854
HapII CCGG 3 cut(s) 67, 261, 627
HhaI GCGC 1 cut(s) 318
Hin1II CATG 5 cut(s) 102, 235, 427, 517, 715
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 4 cut(s) 22, 732, 772, 894
HpaII CCGG 3 cut(s) 67, 261, 627
HphI GGTGA 7 cut(s) 106, 146, 241, 433, 490, 655, 781
Hpy166II GTNNAC 2 cut(s) 188, 646
Hpy188I TCNGA 2 cut(s) 43, 203
Hpy188III TCNNGA 5 cut(s) 19, 232, 358, 712, 787
Hpy8I GTNNAC 2 cut(s) 188, 646
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 7 cut(s) 115, 161, 256, 340, 481, 511, 520
HpyCH4IV ACGT 4 cut(s) 29, 566, 687, 798
HpyCH4V TGCA 2 cut(s) 672, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 632, 839, 866
HpySE526I ACGT 4 cut(s) 29, 566, 687, 798
Hsp92II CATG 5 cut(s) 102, 235, 427, 517, 715
HspAI GCGC 1 cut(s) 316
KflI GGGWCCC 1 cut(s) 360
KroI GCCGGC 2 cut(s) 260, 626
KroNI GCCGGC 2 cut(s) 262, 628
KspI CCGCGG 2 cut(s) 457, 623
Kzo9I GATC 2 cut(s) 15, 426
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 4 cut(s) 43, 98, 323, 345
Lsp1109I GCAGC 5 cut(s) 603, 645, 648, 656, 826
LweI GCATC 3 cut(s) 273, 645, 693
MaeI CTAG 1 cut(s) 521
MaeII ACGT 4 cut(s) 29, 566, 687, 798
MalI GATC 2 cut(s) 17, 428
MboI GATC 2 cut(s) 15, 426
MboII GAAGA 9 cut(s) 103, 220, 247, 373, 376, 409, 430, 472, 814
MhlI GDGCHC 2 cut(s) 48, 95
MluCI AATT 2 cut(s) 524, 751
MlyI GAGTC 2 cut(s) 16, 903
Mph1103I ATGCAT 1 cut(s) 708
MroNI GCCGGC 2 cut(s) 260, 626
MslI CAYNNNNRTG 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 456, 622
MspI CCGG 3 cut(s) 67, 261, 627
MspR9I CCNGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 4 cut(s) 456, 622, 635, 833
MwoI GCNNNNNNNGC 4 cut(s) 43, 632, 839, 866
NaeI GCCGGC 2 cut(s) 262, 628
NdeII GATC 2 cut(s) 15, 426
NgoMIV GCCGGC 2 cut(s) 260, 626
NlaIII CATG 5 cut(s) 102, 235, 427, 517, 715
NlaIV GGNNCC 5 cut(s) 65, 94, 341, 361, 362
NsiI ATGCAT 1 cut(s) 708
OliI CACNNNNGTG 1 cut(s) 569
PagI TCATGA 2 cut(s) 231, 711
PciSI GCTCTTC 1 cut(s) 485
PctI GAATGC 1 cut(s) 769
PdiI GCCGGC 2 cut(s) 262, 628
PfeI GAWTC 2 cut(s) 732, 772
PflMI CCANNNNNTGG 1 cut(s) 87
PleI GAGTC 2 cut(s) 16, 902
PpsI GAGTC 2 cut(s) 16, 902
Ppu21I YACGTR 1 cut(s) 799
PpuMI RGGWCCY 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 664
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 5 cut(s) 65, 94, 341, 361, 362
PspPI GGNCC 6 cut(s) 9, 102, 203, 360, 390, 624
PspPPI RGGWCCY 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 658
RseI CAYNNNNRTG 1 cut(s) 569
Rsr2I CGGWCCG 1 cut(s) 9
RsrII CGGWCCG 1 cut(s) 9
SacII CCGCGG 2 cut(s) 457, 623
SalI GTCGAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 485
Sau3AI GATC 2 cut(s) 15, 426
Sau96I GGNCC 6 cut(s) 9, 102, 203, 360, 390, 624
SchI GAGTC 2 cut(s) 16, 903
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 48, 95
SfaNI GCATC 3 cut(s) 273, 645, 693
Sfr303I CCGCGG 2 cut(s) 457, 623
SgrBI CCGCGG 2 cut(s) 457, 623
SinI GGWCC 5 cut(s) 9, 102, 203, 360, 390
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 2 cut(s) 524, 751
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 855
TaiI ACGT 4 cut(s) 32, 569, 690, 801
TaqI TCGA 2 cut(s) 187, 560
TasI AATT 2 cut(s) 524, 751
TauI GCSGC 9 cut(s) 180, 284, 316, 456, 459, 622, 723, 869, 872
TfiI GAWTC 2 cut(s) 732, 772
TscAI CASTG 1 cut(s) 341
TseI GCWGC 5 cut(s) 616, 658, 661, 669, 839
TspDTI ATGAA 5 cut(s) 220, 493, 502, 700, 728
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 87
VpaK11BI GGWCC 5 cut(s) 9, 102, 203, 360, 390
XapI RAATTY 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.