Rh2DG093700

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000361
Physical Location & Seq
Forward (+)
7337416 .. 7338045
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG093700.1

Sequence Viewer

Length: 630 bp
ATGATTTTGCCTATCTTCTTCATATTTTTTCTCACTTTCTCCTCTTCCTATGCTGCTGTGCAAGACTTCTGCGTCGCAGACTACACAGCTCCTCAAGGTCCTGCAGGCTACTCTTGCAAAAACCCTGCAAATGTCACTGCGGATGATTTCGTCTACTCTGGCCTAGCAGTTGCGGGTAACACCTCAAATTTAAACAAAGTTGGAATCAACCCTGCATTTGCTGGTCAGTTTCCTGGTCTGAATGGCCTTGGCCTTTCACTGGTGCGCGCGGACTTTGAAGTTGGTGGAGTCGGCCCGCTCCATTTACACCATGGAGCTTCAGAACTCATACTTGTTGTTCAAGGAACAATAATTGCAGGGTTCATTGCCACGGATAATACGGTCTATCTAAAAACTCTGAAGCAGGGTGATATAATGCTTCTTCCTCAAGGTTTGCTCCACTTTCAAAAAAATGGAGGTGATACACCAGCCCTTTTATTTGCTAGCTTCAATAGTGAAAACCCGGGTGTGCAGCTTCTGGAGAATGCATTATTTCAAAGCGATTTACCTACTGAGTTGATATCACAGACGACTTCCATCGACACTGCTGAGATTAAGAAACTTAAGGGTCTTTTTGGTGGTACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

22.06

Weight (kDa)

4.82

Isoelectric Point (pI)

21.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 198 4.3e-32 Cupin
Cupin_2 PF07883 90 - 160 2.1e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 153
AccII CGCG 2 cut(s) 267, 269
AciI CCGC 4 cut(s) 140, 173, 269, 296
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 2 cut(s) 303, 419
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 259
AflII CTTAAG 1 cut(s) 602
AgsI TTSAA 5 cut(s) 278, 341, 446, 490, 536
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 4 cut(s) 89, 317, 486, 514
AluI AGCT 4 cut(s) 89, 317, 486, 514
AlwNI CAGNNNCTG 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 4 cut(s) 160, 244, 250, 292
ApeKI GCWGC 2 cut(s) 53, 511
ApoI RAATTY 1 cut(s) 187
AspLEI GCGC 2 cut(s) 267, 269
AspS9I GGNCC 2 cut(s) 98, 293
AsuC2I CCSGG 2 cut(s) 503, 504
AsuHPI GGTGA 2 cut(s) 419, 470
AsuNHI GCTAGC 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 40, 523
BccI CCATC 1 cut(s) 584
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 2 cut(s) 503, 504
BfaI CTAG 2 cut(s) 164, 483
BfmI CTRYAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 602
BisI GCNGC 2 cut(s) 54, 512
BlsI GCNGC 2 cut(s) 55, 513
Bme1390I CCNGG 3 cut(s) 234, 503, 504
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 502
BmgT120I GGNCC 2 cut(s) 98, 293
BmrFI CCNGG 3 cut(s) 234, 503, 504
BmtI GCTAGC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 78, 411
BpuMI CCSGG 2 cut(s) 503, 504
BsaJI CCNNGG 4 cut(s) 247, 310, 369, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 4 cut(s) 247, 310, 369, 502
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 543, 579
BseNI ACTGG 1 cut(s) 264
BsePI GCGCGC 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 31, 81
BseXI GCAGC 2 cut(s) 40, 523
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 2 cut(s) 267, 269
BshFI GGCC 4 cut(s) 162, 246, 252, 294
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 259
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 4 cut(s) 162, 246, 252, 294
BsoBI CYCGRG 1 cut(s) 502
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 4 cut(s) 140, 173, 269, 296
BspANI GGCC 4 cut(s) 162, 246, 252, 294
BspCNI CTCAG 2 cut(s) 544, 580
BspFNI CGCG 2 cut(s) 267, 269
BspMAI CTGCAG 1 cut(s) 106
BspOI GCTAGC 1 cut(s) 486
BspTI CTTAAG 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 4 cut(s) 247, 310, 369, 502
BssHII GCGCGC 1 cut(s) 265
BssT1I CCWWGG 2 cut(s) 247, 310
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 49
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 106, 267, 296, 484
BstDEI CTNAG 2 cut(s) 552, 588
BstDSI CCRYGG 2 cut(s) 310, 369
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 2 cut(s) 267, 269
BstHHI GCGC 2 cut(s) 267, 269
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 232, 501, 502
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 2 cut(s) 267, 269
BstV1I GCAGC 2 cut(s) 40, 523
BsuRI GGCC 4 cut(s) 162, 246, 252, 294
BtgI CCRYGG 2 cut(s) 310, 369
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 2 cut(s) 135, 582
BtsIMutI CAGTG 3 cut(s) 135, 257, 582
Cac8I GCNNGC 4 cut(s) 106, 267, 296, 484
CaiI CAGNNNCTG 1 cut(s) 517
CfoI GCGC 2 cut(s) 267, 269
Cfr13I GGNCC 2 cut(s) 98, 293
Cfr9I CCCGGG 1 cut(s) 502
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 621
CviAII CATG 1 cut(s) 311
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 2 cut(s) 552, 588
DraI TTTAAA 1 cut(s) 192
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 247, 310
Eco32I GATATC 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 303, 419
Eco88I CYCGRG 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 2 cut(s) 247, 310
EcoT22I ATGCAT 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 247, 310
FaeI CATG 1 cut(s) 314
FaiI YATR 5 cut(s) 23, 51, 312, 329, 413
FatI CATG 1 cut(s) 310
FauI CCCGC 2 cut(s) 166, 303
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 54, 512
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 54, 512
FspBI CTAG 2 cut(s) 164, 483
GlaI GCGC 2 cut(s) 266, 268
GluI GCNGC 2 cut(s) 54, 512
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 4 cut(s) 162, 246, 252, 294
HapII CCGG 1 cut(s) 503
HgaI GACGC 1 cut(s) 61
HhaI GCGC 2 cut(s) 267, 269
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 2 cut(s) 265, 267
HinP1I GCGC 2 cut(s) 265, 267
HinfI GANTC 2 cut(s) 204, 288
HpaII CCGG 1 cut(s) 503
HphI GGTGA 2 cut(s) 419, 470
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 240, 322, 399
Hpy188III TCNNGA 1 cut(s) 518
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 8 cut(s) 61, 104, 117, 128, 215, 356, 511, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 552, 588
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 2 cut(s) 265, 267
LmnI GCTCC 4 cut(s) 94, 303, 314, 441
Lsp1109I GCAGC 2 cut(s) 40, 523
MaeI CTAG 2 cut(s) 164, 483
MaeIII GTNAC 2 cut(s) 133, 176
MbiI CCGCTC 1 cut(s) 298
MboII GAAGA 4 cut(s) 7, 10, 36, 413
MluCI AATT 3 cut(s) 187, 351, 625
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 5 cut(s) 52, 102, 193, 435, 449
Mph1103I ATGCAT 1 cut(s) 529
MseI TTAA 3 cut(s) 191, 594, 603
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 3 cut(s) 234, 503, 504
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 2 cut(s) 267, 269
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 2 cut(s) 503, 504
NcoI CCATGG 1 cut(s) 310
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 529
PauI GCGCGC 1 cut(s) 265
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 2 cut(s) 55, 513
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 2 cut(s) 98, 293
PspPPI RGGWCCY 1 cut(s) 98
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 517
PteI GCGCGC 1 cut(s) 265
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SaqAI TTAA 3 cut(s) 191, 594, 603
SatI GCNGC 2 cut(s) 54, 512
Sau96I GGNCC 2 cut(s) 98, 293
SbfI CCTGCAGG 1 cut(s) 106
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 3 cut(s) 234, 503, 504
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 9 cut(s) 91, 100, 185, 319, 433, 460, 488, 516, 550
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 504
SmlI CTYRAG 3 cut(s) 93, 426, 602
SmoI CTYRAG 3 cut(s) 93, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 3 cut(s) 187, 351, 625
SsiI CCGC 4 cut(s) 140, 173, 269, 296
SspMI CTAG 2 cut(s) 164, 483
StyD4I CCNGG 3 cut(s) 232, 501, 502
StyI CCWWGG 2 cut(s) 247, 310
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 579
TasI AATT 3 cut(s) 187, 351, 625
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 3 cut(s) 191, 594, 603
Tru9I TTAA 3 cut(s) 191, 594, 603
TscAI CASTG 3 cut(s) 142, 264, 589
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 53, 511
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 10, 352
TspGWI ACGGA 1 cut(s) 386
TspMI CCCGGG 1 cut(s) 502
TspRI CASTG 3 cut(s) 142, 264, 589
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
XmaI CCCGGG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 2 cut(s) 164, 483
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.