MD02G1089800.v1.1

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000361
Physical Location & Seq
Forward (+)
7131941 .. 7132573
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1089800.v1.1.491

Sequence Viewer

Length: 633 bp
ATGATTTTCCCTATCTTCTTCACATTCTCTCTCCTCCTCTCCTCCTCCCTTGCTTCTGTGAAAGACTTCTGCATCGCAAACTACAAAGCCCGGGAGGGCCCTGCAGGCTACTCTTGCAAAAAGCCTGCTAAAGTTACGGTAGATGATTTCGTGTACTCTGGCCTAGGCATTCCCGGCAACACCACGAATATCTTCAAATCCGCAGTCACCCCTGCTTTTGCTGCTCAATTTCCTGGTGTGAATGGCCTCGGCATTTCATTCGCGCGCCTAGACCTAGCTGTGGGTGGAGTCATGCCACTTCACACGCACCCCAGGGGTTCGGAAATCCTACTTGTTGCTCAAGGAACAATAATTGCCGGGTTTGTTTCCTCAGCTAATAACACGGTTTATAGGAAAACTCTTAAAAAGGGTGACATTATGGCGATCCCTCAAGGTCTACTGCACTTCCAAGTGAATGGAGATAAAACTCCAGCCCTTGCATTTGTTAGCTTCAGTAGTCCAAGCCCTGGTCTGCAGATTCTGGACTATGCGCTGTTCCAAAACGACTTACCTACTGAATTGATAGCGCAGACTACTGTCCTCGACGCTGCGCAGATAAAGAAGCTTAAGGGTGTTCTCGGTGGTACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

211

Amino Acids

22.2

Weight (kDa)

9.25

Isoelectric Point (pI)

23.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 54 - 199 1.9e-38 Cupin
Cupin_2 PF07883 90 - 162 8.6e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 591
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 506
AccI GTMKAC 1 cut(s) 436
AccII CGCG 2 cut(s) 263, 265
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 475
AfaI GTAC 2 cut(s) 155, 625
AfiI CCNNNNNNNGG 2 cut(s) 280, 506
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 3 cut(s) 232, 311, 505
AluBI AGCT 4 cut(s) 278, 374, 489, 604
AluI AGCT 4 cut(s) 278, 374, 489, 604
AlwI GGATC 1 cut(s) 418
AlwNI CAGNNNCTG 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 3 cut(s) 97, 160, 244
ApaI GGGCCC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 221, 587
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
Asp700I GAANNNNTTC 2 cut(s) 65, 191
Asp718I GGTACC 1 cut(s) 623
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 5 cut(s) 265, 267, 532, 568, 592
AspS9I GGNCC 2 cut(s) 97, 98
AsuC2I CCSGG 4 cut(s) 91, 92, 174, 358
AsuHPI GGTGA 2 cut(s) 199, 422
AvaI CYCGRG 1 cut(s) 90
AvrII CCTAGG 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 208, 574
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 3 cut(s) 234, 313, 507
BcnI CCSGG 4 cut(s) 91, 92, 174, 358
BfaI CTAG 3 cut(s) 164, 269, 275
BfmI CTRYAG 2 cut(s) 102, 512
BfrI CTTAAG 1 cut(s) 605
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 2 cut(s) 222, 588
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 2 cut(s) 223, 589
Bme1390I CCNGG 7 cut(s) 91, 92, 174, 234, 313, 358, 507
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 97, 98
BmiI GGNNCC 2 cut(s) 99, 625
BmrFI CCNGG 7 cut(s) 91, 92, 174, 234, 313, 358, 507
BmsI GCATC 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 575
BpmI CTGGAG 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 370
BpuEI CTTGAG 2 cut(s) 324, 414
BpuMI CCSGG 4 cut(s) 91, 92, 174, 358
BsaJI CCNNGG 6 cut(s) 90, 163, 247, 311, 312, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 506
BseBI CCWGG 3 cut(s) 234, 313, 507
BseDI CCNNGG 6 cut(s) 90, 163, 247, 311, 312, 505
BseLI CCNNNNNNNGG 2 cut(s) 280, 506
BseMII CTCAG 1 cut(s) 384
BsePI GCGCGC 1 cut(s) 263
BseRI GAGGAG 4 cut(s) 23, 26, 31, 34
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 2 cut(s) 208, 574
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 2 cut(s) 263, 265
BshFI GGCC 3 cut(s) 99, 162, 246
BshNI GGYRCC 1 cut(s) 623
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 3 cut(s) 91, 174, 357
BslI CCNNNNNNNGG 2 cut(s) 280, 506
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 3 cut(s) 99, 162, 246
BsoBI CYCGRG 1 cut(s) 90
Bsp120I GGGCCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 423
BspACI CCGC 1 cut(s) 201
BspANI GGCC 3 cut(s) 99, 162, 246
BspCNI CTCAG 1 cut(s) 383
BspFNI CGCG 2 cut(s) 263, 265
BspLI GGNNCC 2 cut(s) 99, 625
BspMAI CTGCAG 2 cut(s) 106, 516
BspPI GGATC 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 623
BspTI CTTAAG 1 cut(s) 605
BssECI CCNNGG 6 cut(s) 90, 163, 247, 311, 312, 505
BssHII GCGCGC 1 cut(s) 263
BssMI GATC 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 3 cut(s) 234, 313, 507
Bst4CI ACNGT 3 cut(s) 139, 385, 577
BstAFI CTTAAG 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 106, 126, 265
BstDEI CTNAG 1 cut(s) 370
BstFNI CGCG 2 cut(s) 263, 265
BstHHI GCGC 5 cut(s) 265, 267, 532, 568, 592
BstKTI GATC 1 cut(s) 426
BstMBI GATC 1 cut(s) 423
BstMWI GCNNNNNNNGC 4 cut(s) 105, 114, 174, 221
BstNI CCWGG 3 cut(s) 234, 313, 507
BstPAI GACNNNNGTC 1 cut(s) 575
BstSCI CCNGG 7 cut(s) 89, 90, 172, 232, 311, 356, 505
BstSFI CTRYAG 2 cut(s) 102, 512
BstSLI GKGCMC 1 cut(s) 101
BstUI CGCG 2 cut(s) 263, 265
BstV1I GCAGC 2 cut(s) 208, 574
BstXI CCANNNNNNTGG 1 cut(s) 455
BsuRI GGCC 3 cut(s) 99, 162, 246
BtgZI GCGATG 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 106, 126, 265
CaiI CAGNNNCTG 1 cut(s) 520
CfoI GCGC 5 cut(s) 265, 267, 532, 568, 592
Cfr13I GGNCC 2 cut(s) 97, 98
Cfr9I CCCGGG 1 cut(s) 90
CseI GACGC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 154, 624
CviAII CATG 1 cut(s) 292
CviQI GTAC 2 cut(s) 154, 624
DdeI CTNAG 1 cut(s) 370
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 2 cut(s) 97, 98
EcoRII CCWGG 3 cut(s) 232, 311, 505
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 295
FaiI YATR 4 cut(s) 293, 390, 419, 528
FatI CATG 1 cut(s) 291
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 222, 588
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 222, 588
FspBI CTAG 3 cut(s) 164, 269, 275
FspI TGCGCA 1 cut(s) 591
GlaI GCGC 5 cut(s) 264, 266, 531, 567, 591
GluI GCNGC 2 cut(s) 222, 588
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 3 cut(s) 99, 162, 246
HapII CCGG 3 cut(s) 91, 174, 357
HgaI GACGC 1 cut(s) 593
HhaI GCGC 5 cut(s) 265, 267, 532, 568, 592
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 5 cut(s) 263, 265, 530, 566, 590
HinP1I GCGC 5 cut(s) 263, 265, 530, 566, 590
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 2 cut(s) 288, 517
HpaII CCGG 3 cut(s) 91, 174, 357
HphI GGTGA 2 cut(s) 199, 422
Hpy166II GTNNAC 2 cut(s) 154, 437
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 2 cut(s) 154, 437
Hpy99I CGWCG 1 cut(s) 587
HpyCH4III ACNGT 3 cut(s) 139, 385, 577
HpyCH4V TGCA 6 cut(s) 72, 104, 117, 442, 479, 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 114, 174, 221
HpyF3I CTNAG 1 cut(s) 370
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 5 cut(s) 263, 265, 530, 566, 590
KpnI GGTACC 1 cut(s) 627
Kzo9I GATC 1 cut(s) 423
Lsp1109I GCAGC 2 cut(s) 208, 574
LweI GCATC 1 cut(s) 81
MaeI CTAG 3 cut(s) 164, 269, 275
MaeIII GTNAC 3 cut(s) 133, 205, 410
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 3 cut(s) 7, 10, 184
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 4 cut(s) 227, 351, 557, 628
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 9 cut(s) 44, 47, 52, 55, 88, 257, 379, 438, 590
MroXI GAANNNNTTC 2 cut(s) 65, 191
MseI TTAA 2 cut(s) 402, 606
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 3 cut(s) 91, 174, 357
MspR9I CCNGG 7 cut(s) 91, 92, 174, 234, 313, 358, 507
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 3 cut(s) 234, 313, 507
MvnI CGCG 2 cut(s) 263, 265
MwoI GCNNNNNNNGC 4 cut(s) 105, 114, 174, 221
NciI CCSGG 4 cut(s) 91, 92, 174, 358
NdeII GATC 1 cut(s) 423
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 99, 625
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 205, 410
NsbI TGCGCA 1 cut(s) 591
PasI CCCWGGG 1 cut(s) 312
PauI GCGCGC 1 cut(s) 263
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 2 cut(s) 65, 191
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 2 cut(s) 223, 589
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PshAI GACNNNNGTC 1 cut(s) 575
Psp6I CCWGG 3 cut(s) 232, 311, 505
PspGI CCWGG 3 cut(s) 232, 311, 505
PspN4I GGNNCC 2 cut(s) 99, 625
PspOMI GGGCCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 97, 98
PstI CTGCAG 2 cut(s) 106, 516
PstNI CAGNNNCTG 1 cut(s) 520
PteI GCGCGC 1 cut(s) 263
RsaI GTAC 2 cut(s) 155, 625
RsaNI GTAC 2 cut(s) 154, 624
SaqAI TTAA 2 cut(s) 402, 606
SatI GCNGC 2 cut(s) 222, 588
Sau3AI GATC 1 cut(s) 423
Sau96I GGNCC 2 cut(s) 97, 98
SbfI CCTGCAGG 1 cut(s) 106
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 7 cut(s) 91, 92, 174, 234, 313, 358, 507
SdaI CCTGCAGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 101
SetI ASST 7 cut(s) 276, 280, 376, 436, 491, 553, 606
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 102, 512
SmaI CCCGGG 1 cut(s) 92
SmlI CTYRAG 3 cut(s) 339, 429, 605
SmoI CTYRAG 3 cut(s) 339, 429, 605
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 4 cut(s) 227, 351, 557, 628
SsiI CCGC 1 cut(s) 201
SspMI CTAG 3 cut(s) 164, 269, 275
StyD4I CCNGG 7 cut(s) 89, 90, 172, 232, 311, 356, 505
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 139, 385, 577
TaqI TCGA 1 cut(s) 582
TasI AATT 4 cut(s) 227, 351, 557, 628
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 2 cut(s) 402, 606
Tru9I TTAA 2 cut(s) 402, 606
TseFI GTSAC 2 cut(s) 205, 410
TseI GCWGC 2 cut(s) 221, 587
Tsp45I GTSAC 2 cut(s) 205, 410
TspDTI ATGAA 1 cut(s) 246
TspMI CCCGGG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 506
Vha464I CTTAAG 1 cut(s) 605
XmaI CCCGGG 1 cut(s) 90
XmaJI CCTAGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 436
XmnI GAANNNNTTC 2 cut(s) 65, 191
XspI CTAG 3 cut(s) 164, 269, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.