FvH4_6g36650

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000361
Physical Location & Seq
Forward (+)
28830858 .. 28831484
627 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36650.t1

Sequence Viewer

Length: 627 bp
ATGATTTCCCGTGTCTTCTTCGTATTTTCTCTCATCCTCTCCAGTTCCTATGCTGCTATGCAAGACTTTTGTGTTGCAGATTATGCAGCTCCTCAAAGCCCTGCAGGGTACGCTTGCAAAGACCCCGTAAAGGTTACGGTAGATGATTTCGTGTTCTCTGGCCTTAGGGTTGCAGGTAACATCTCAAGTATCAACAAAATCGGGCTCTCGGCGGCATTTGCTGTTAACTTTCCTGGTCTTAACGGCCTCGGCGTTGCTCTGGTTCGTGCAGACTTTGCTGTTGGTGGAGTTGTTCCGATTCACTCACACCGTGACGCTACAGAACTCGTTATCCTTGTCGAAGGAACAGTCGTTGCCGGGTTCATTGCCTCGAATAACAAGGCGTATGTGAAGACTCTGCACAAGGGTGACACTATGGTTTTTCCTCAAGGTTTGTTTCACTTCCTAGTGAATGTCGGTCGTACTCCAGCTCTAGCATATGCCAGCTTCAGCAGTGCAAACCCAGGTGTGCAGACTCTGGAGACAGCTCTCTTCCAAAACGATTTACCTACCGAAATCATAGCCAAGTCCACTTTACTTGACAAAGTTCAGATTCAGAAACTTAAGCGTCTTCTTGGGGGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

22.04

Weight (kDa)

8.55

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 55 - 198 4.5e-33 Cupin
Cupin_2 PF07883 90 - 159 2.4e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AciI CCGC 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 472
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 110, 463
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 1 cut(s) 602
AjnI CCWGG 2 cut(s) 232, 502
AleI CACNNNNGTG 1 cut(s) 405
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 5 cut(s) 89, 470, 486, 527, 624
AluI AGCT 5 cut(s) 89, 470, 486, 527, 624
Alw26I GTCTC 1 cut(s) 515
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 2 cut(s) 160, 244
ApeKI GCWGC 2 cut(s) 53, 86
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 164
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 3 cut(s) 7, 398, 602
BbvI GCAGC 2 cut(s) 40, 98
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 234, 504
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 3 cut(s) 446, 473, 625
BfmI CTRYAG 2 cut(s) 102, 318
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 3 cut(s) 54, 87, 213
BlsI GCNGC 3 cut(s) 55, 88, 214
Bme1390I CCNGG 3 cut(s) 234, 358, 504
BmrFI CCNGG 3 cut(s) 234, 358, 504
BpiI GAAGAC 3 cut(s) 7, 398, 602
BpmI CTGGAG 3 cut(s) 25, 450, 539
BpuEI CTTGAG 2 cut(s) 169, 411
BpuMI CCSGG 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 247, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 42
Bse21I CCTNAGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 234, 504
BseDI CCNNGG 2 cut(s) 247, 502
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 40, 98
BsgI GTGCAG 3 cut(s) 288, 383, 530
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 2 cut(s) 162, 246
BsiEI CGRYCG 1 cut(s) 460
BsiSI CCGG 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 515
BsnI GGCC 2 cut(s) 162, 246
Bsp1286I GDGCHC 1 cut(s) 207
BspACI CCGC 1 cut(s) 212
BspANI GGCC 2 cut(s) 162, 246
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 247, 502
Bst2UI CCWGG 2 cut(s) 234, 504
Bst4CI ACNGT 3 cut(s) 139, 311, 349
Bst6I CTCTTC 1 cut(s) 536
BstAFI CTTAAG 1 cut(s) 602
BstAPI GCANNNNNTGC 2 cut(s) 83, 275
BstC8I GCNNGC 2 cut(s) 115, 484
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 515
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 4 cut(s) 83, 110, 218, 275
BstNI CCWGG 2 cut(s) 234, 504
BstSCI CCNGG 3 cut(s) 232, 356, 502
BstSFI CTRYAG 2 cut(s) 102, 318
BstV1I GCAGC 2 cut(s) 40, 98
BstV2I GAAGAC 3 cut(s) 7, 398, 602
Bsu36I CCTNAGG 1 cut(s) 164
BsuRI GGCC 2 cut(s) 162, 246
BtsCI GGATG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 499
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 115, 484
CaiI CAGNNNCTG 1 cut(s) 517
CseI GACGC 2 cut(s) 323, 596
Csp6I GTAC 2 cut(s) 109, 462
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviQI GTAC 2 cut(s) 109, 462
DdeI CTNAG 1 cut(s) 164
DraIII CACNNNGTG 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 472
Eco81I CCTNAGG 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 232, 502
EcoT38I GRGCYC 1 cut(s) 207
FaiI YATR 8 cut(s) 51, 59, 84, 387, 416, 478, 480, 560
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 54, 87, 213
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 54, 87, 213
FspBI CTAG 3 cut(s) 446, 473, 625
GluI GCNGC 3 cut(s) 54, 87, 213
GsuI CTGGAG 3 cut(s) 25, 450, 539
HaeIII GGCC 2 cut(s) 162, 246
HapII CCGG 1 cut(s) 357
HgaI GACGC 2 cut(s) 323, 596
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 4 cut(s) 298, 394, 514, 592
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 1 cut(s) 357
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 226, 570
Hpy188I TCNGA 3 cut(s) 297, 591, 597
Hpy188III TCNNGA 1 cut(s) 518
Hpy8I GTNNAC 2 cut(s) 226, 570
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 3 cut(s) 139, 311, 349
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 110, 218, 275
HpyF3I CTNAG 1 cut(s) 164
KspAI GTTAAC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 40, 98
MaeI CTAG 3 cut(s) 446, 473, 625
MaeIII GTNAC 4 cut(s) 133, 176, 311, 407
MboII GAAGA 5 cut(s) 7, 10, 403, 523, 602
MhlI GDGCHC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 388, 508
MnlI CCTC 5 cut(s) 47, 102, 257, 379, 435
MseI TTAA 3 cut(s) 225, 240, 603
MslI CAYNNNNRTG 1 cut(s) 405
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 3 cut(s) 234, 358, 504
MvaI CCWGG 2 cut(s) 234, 504
MwoI GCNNNNNNNGC 4 cut(s) 83, 110, 218, 275
NciI CCSGG 1 cut(s) 358
NdeI CATATG 1 cut(s) 478
NmeAIII GCCGAG 2 cut(s) 188, 228
NmuCI GTSAC 2 cut(s) 311, 407
OliI CACNNNNGTG 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 298, 592
PkrI GCNGC 3 cut(s) 55, 88, 214
PleI GAGTC 2 cut(s) 388, 508
PpsI GAGTC 2 cut(s) 388, 508
Psp6I CCWGG 2 cut(s) 232, 502
PspGI CCWGG 2 cut(s) 232, 502
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 110, 463
RsaNI GTAC 2 cut(s) 109, 462
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 225, 240, 603
SatI GCNGC 3 cut(s) 54, 87, 213
SbfI CCTGCAGG 1 cut(s) 106
SchI GAGTC 2 cut(s) 388, 508
ScrFI CCNGG 3 cut(s) 234, 358, 504
SdaI CCTGCAGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 207
SfcI CTRYAG 2 cut(s) 102, 318
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 3 cut(s) 184, 426, 602
SmoI CTYRAG 3 cut(s) 184, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
SsiI CCGC 1 cut(s) 212
SspMI CTAG 3 cut(s) 446, 473, 625
StyD4I CCNGG 3 cut(s) 232, 356, 502
TaaI ACNGT 3 cut(s) 139, 311, 349
TaqI TCGA 2 cut(s) 339, 371
TaqII GACCGA 1 cut(s) 446
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 2 cut(s) 298, 592
Tru1I TTAA 3 cut(s) 225, 240, 603
Tru9I TTAA 3 cut(s) 225, 240, 603
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 2 cut(s) 311, 407
TseI GCWGC 2 cut(s) 53, 86
Tsp45I GTSAC 2 cut(s) 311, 407
TspDTI ATGAA 1 cut(s) 352
TspRI CASTG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 602
XspI CTAG 3 cut(s) 446, 473, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.