Rh2AG097200

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000361
Physical Location & Seq
Reverse (-)
8265019 .. 8265763
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG097200.1

Sequence Viewer

Length: 393 bp
ATGACCGTTTTCGCCGTCTCCTTCATTTTTTGTCTCGCTCTCTCATTTTCCTATGCTGCTGTGCAGGACTTCTGTGTTGCGGACTATGCAGCCCCTCAAATCCCTACAGGCTACTCTTTCAAGAACCCCGCAAATGTTACGGTAGATGATTTCGTATACACTGGCCTTGAAGTTGCTGGCAATACCTCAAATATTATTAAAGCTGGACTCAAGCCAGCATTTGTTTCTCAGTTTCCTGGTCTGAATGGACTTGGCCTTTCACTGGCTTGGGCAGACTTGGCTGTTGGTGGAGTTGTCCCACTTCACACACACCAGAGAGCTACAGAAATCATACTTATTGTCAAAGGAACAGTAGTTGTCGGGTTCATTGACTCAAATAACAAATTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

130

Amino Acids

13.78

Weight (kDa)

5.42

Isoelectric Point (pI)

18.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 56 - 127 4.7e-16 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AciI CCGC 2 cut(s) 80, 129
AcsI RAATTY 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 121, 170
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 203, 320
AluI AGCT 2 cut(s) 203, 320
Alw26I GTCTC 2 cut(s) 22, 38
AoxI GGCC 2 cut(s) 163, 253
ApeKI GCWGC 2 cut(s) 56, 89
ApoI RAATTY 1 cut(s) 383
BbvI GCAGC 2 cut(s) 43, 101
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 22, 38
BfmI CTRYAG 2 cut(s) 105, 321
BisI GCNGC 2 cut(s) 57, 90
BlsI GCNGC 2 cut(s) 58, 91
Bme1390I CCNGG 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 166, 267
BseBI CCWGG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 166, 267
BseXI GCAGC 2 cut(s) 43, 101
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 2 cut(s) 165, 255
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 22, 38
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 165, 255
BspACI CCGC 2 cut(s) 80, 129
BspANI GGCC 2 cut(s) 165, 255
BspCNI CTCAG 1 cut(s) 241
BsrI ACTGG 2 cut(s) 166, 267
BssNAI GTATAC 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 3 cut(s) 7, 142, 352
BstC8I GCNNGC 2 cut(s) 178, 216
BstDEI CTNAG 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 22, 38
BstMWI GCNNNNNNNGC 2 cut(s) 86, 278
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 2 cut(s) 105, 321
BstV1I GCAGC 2 cut(s) 43, 101
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 2 cut(s) 165, 255
BtsIMutI CAGTG 2 cut(s) 159, 260
Cac8I GCNNGC 2 cut(s) 178, 216
CviJI RGCY 9 cut(s) 92, 111, 165, 203, 214, 255, 266, 281, 320
CviKI_1 RGCY 9 cut(s) 92, 111, 165, 203, 214, 255, 266, 281, 320
DdeI CTNAG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 4 cut(s) 54, 87, 157, 332
FaqI GGGAC 1 cut(s) 281
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 57, 90
Fsp4HI GCNGC 2 cut(s) 57, 90
GluI GCNGC 2 cut(s) 57, 90
HaeIII GGCC 2 cut(s) 165, 255
HinfI GANTC 2 cut(s) 207, 371
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 3 cut(s) 7, 142, 352
HpyCH4V TGCA 2 cut(s) 64, 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 278
HpyF3I CTNAG 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 43, 101
MaeIII GTNAC 1 cut(s) 136
MluCI AATT 1 cut(s) 383
MlyI GAGTC 2 cut(s) 201, 365
MnlI CCTC 2 cut(s) 105, 196
MseI TTAA 2 cut(s) 198, 391
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 86, 278
PkrI GCNGC 2 cut(s) 58, 91
PleI GAGTC 2 cut(s) 201, 365
PpsI GAGTC 2 cut(s) 201, 365
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
SaqAI TTAA 2 cut(s) 198, 391
SatI GCNGC 2 cut(s) 57, 90
SchI GAGTC 2 cut(s) 201, 365
ScrFI CCNGG 1 cut(s) 237
SetI ASST 3 cut(s) 188, 205, 322
SfcI CTRYAG 2 cut(s) 105, 321
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 383
SsiI CCGC 2 cut(s) 80, 129
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 3 cut(s) 7, 142, 352
TasI AATT 1 cut(s) 383
Tru1I TTAA 2 cut(s) 198, 391
Tru9I TTAA 2 cut(s) 198, 391
TscAI CASTG 2 cut(s) 166, 267
TseI GCWGC 2 cut(s) 56, 89
TspDTI ATGAA 2 cut(s) 13, 355
TspRI CASTG 2 cut(s) 166, 267
XapI RAATTY 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.