Rroxscaffold_2G00146930

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000361
Physical Location & Seq
Reverse (-)
84838766 .. 84839507
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146930.1

Sequence Viewer

Length: 561 bp
ATGGCTCAAGACTTGACAGCTCCAGAAGGCCCTGCAGGCTACTCCTGCAAGAAGCCTGCAAAAGTTACCGTAGATGACTTTGTGTTCTCTGGCCTAGGCATTGCTGGTAACACCACCAATATCATCAAAGCTGCAGTCACACCTGCTTTTGCTGCTCAATTTCCTGGTGTCAATGGCCTCGGCATTTCGCTGGCTCGTTTAGACTTGGCTGTTGATGGAGTCATCCCATTTCACACGCACCCCGGAGCTTCGGAAGTCCTGATTGTTGTGGAAGGGACAATCTGTGCCGGGTTTGTTTCCTCAGCTAACACAGTTTATCTACGAACTCTTGAGAAGGGTGACAGTATGGTTTTCCCTCAAGGTTTGTTGCACTTCCAAGTCAATGGATGTGATACTCCATCCCTTGCCTTTGTTAGCTTCAGTAGTCCTAACCCCGGTCTGCAGATTCTGGACTTTGCATTATTTAAAAATGACTTACCGACCCCATTGATAGCTCAAACCACATTCCTCGACGTTGCTCAGATAAAGAAACTTAAGGGTGTTCTTGGTGGCACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

186

Amino Acids

19.33

Weight (kDa)

5.47

Isoelectric Point (pI)

20.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 31 - 175 7.2e-36 Cupin
Cupin_2 PF07883 68 - 132 1.9e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc36I ACCTGC 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 434
AflII CTTAAG 1 cut(s) 533
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 6 cut(s) 20, 131, 248, 305, 417, 494
AluI AGCT 6 cut(s) 20, 131, 248, 305, 417, 494
AlwNI CAGNNNCTG 1 cut(s) 448
AoxI GGCC 3 cut(s) 28, 91, 175
ApeKI GCWGC 2 cut(s) 131, 152
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspA2I CCTAGG 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 3 cut(s) 243, 289, 435
AsuHPI GGTGA 1 cut(s) 350
AvrII CCTAGG 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 118, 139
BccI CCATC 2 cut(s) 209, 406
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 3 cut(s) 243, 289, 435
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 3 cut(s) 33, 132, 440
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 2 cut(s) 132, 153
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 2 cut(s) 133, 154
Bme1390I CCNGG 4 cut(s) 165, 243, 289, 435
BmgT120I GGNCC 1 cut(s) 29
BmrFI CCNGG 4 cut(s) 165, 243, 289, 435
BpmI CTGGAG 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 301
BpuEI CTTGAG 2 cut(s) 342, 350
BpuMI CCSGG 3 cut(s) 243, 289, 435
BsaJI CCNNGG 4 cut(s) 94, 178, 241, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 94, 178, 241, 433
BseGI GGATG 3 cut(s) 222, 392, 398
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 315, 533
BseXI GCAGC 2 cut(s) 118, 139
BshFI GGCC 3 cut(s) 30, 93, 177
BsiSI CCGG 3 cut(s) 243, 288, 435
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 3 cut(s) 30, 93, 177
BspANI GGCC 3 cut(s) 30, 93, 177
BspCNI CTCAG 2 cut(s) 314, 532
BspMAI CTGCAG 3 cut(s) 37, 136, 444
BspMI ACCTGC 1 cut(s) 151
BspTI CTTAAG 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 4 cut(s) 94, 178, 241, 433
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 70, 313, 344
BstAFI CTTAAG 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 37, 57, 192
BstDEI CTNAG 2 cut(s) 301, 519
BstF5I GGATG 3 cut(s) 222, 392, 398
BstMWI GCNNNNNNNGC 3 cut(s) 36, 45, 152
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 4 cut(s) 163, 241, 287, 433
BstSFI CTRYAG 3 cut(s) 33, 132, 440
BstV1I GCAGC 2 cut(s) 118, 139
BstXI CCANNNNNNTGG 1 cut(s) 383
BsuRI GGCC 3 cut(s) 30, 93, 177
BtsCI GGATG 3 cut(s) 222, 392, 398
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 3 cut(s) 37, 57, 192
CaiI CAGNNNCTG 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 301, 519
DraI TTTAAA 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaiI YATR 1 cut(s) 347
FaqI GGGAC 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 132, 153
FokI GGATG 3 cut(s) 209, 385, 399
Fsp4HI GCNGC 2 cut(s) 132, 153
FspBI CTAG 1 cut(s) 95
GluI GCNGC 2 cut(s) 132, 153
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 3 cut(s) 30, 93, 177
HapII CCGG 3 cut(s) 243, 288, 435
HinfI GANTC 2 cut(s) 219, 445
HpaII CCGG 3 cut(s) 243, 288, 435
HphI GGTGA 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 253, 522
Hpy188III TCNNGA 5 cut(s) 8, 23, 259, 329, 449
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 3 cut(s) 20, 266, 328
HpyCH4III ACNGT 3 cut(s) 70, 313, 344
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 7 cut(s) 35, 48, 59, 134, 370, 442, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 45, 152
HpyF3I CTNAG 2 cut(s) 301, 519
HpySE526I ACGT 1 cut(s) 513
LmnI GCTCC 2 cut(s) 25, 245
Lsp1109I GCAGC 2 cut(s) 118, 139
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 4 cut(s) 64, 107, 136, 338
MluCI AATT 2 cut(s) 158, 556
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 4 cut(s) 188, 310, 366, 518
MseI TTAA 3 cut(s) 465, 534, 559
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 3 cut(s) 243, 288, 435
MspR9I CCNGG 4 cut(s) 165, 243, 289, 435
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 36, 45, 152
NciI CCSGG 3 cut(s) 243, 289, 435
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 136, 338
PaqCI CACCTGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 2 cut(s) 133, 154
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 1 cut(s) 29
PstI CTGCAG 3 cut(s) 37, 136, 444
PstNI CAGNNNCTG 1 cut(s) 448
SaqAI TTAA 3 cut(s) 465, 534, 559
SatI GCNGC 2 cut(s) 132, 153
Sau96I GGNCC 1 cut(s) 29
SbfI CCTGCAGG 1 cut(s) 37
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 4 cut(s) 165, 243, 289, 435
SdaI CCTGCAGG 1 cut(s) 37
SetI ASST 9 cut(s) 22, 133, 145, 250, 307, 364, 419, 496, 516
SfcI CTRYAG 3 cut(s) 33, 132, 440
SmlI CTYRAG 4 cut(s) 6, 329, 357, 533
SmoI CTYRAG 4 cut(s) 6, 329, 357, 533
Sse8387I CCTGCAGG 1 cut(s) 37
Sse9I AATT 2 cut(s) 158, 556
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 4 cut(s) 163, 241, 287, 433
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 70, 313, 344
TaiI ACGT 1 cut(s) 516
TaqI TCGA 1 cut(s) 510
TasI AATT 2 cut(s) 158, 556
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 3 cut(s) 465, 534, 559
Tru9I TTAA 3 cut(s) 465, 534, 559
TseFI GTSAC 2 cut(s) 136, 338
TseI GCWGC 2 cut(s) 131, 152
Tsp45I GTSAC 2 cut(s) 136, 338
Vha464I CTTAAG 1 cut(s) 533
XmaJI CCTAGG 1 cut(s) 94
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.