Rmu_sc0004359.1_g000015

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004359.1
OG0000361
Physical Location & Seq
Forward (+)
63865 .. 65613
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004359.1_g000015.1.cds

Sequence Viewer

Length: 801 bp
atgattttccctatctttttcacatttgttctcctcctttccatttccgatgctgcagtgcaggacttctgtgttgcagactacaaggctccagaaggccctgcaggctactcctgcaagaaggctgcaaaagttaccgtagatgactttgtattctctggcctaggtgttgctggtaacaccacaaacattatcaaagctgcagtcaccccagcatttgctgctcaatttcctggtgttaacggccttggcatttcgctggctcgtctagacctggctcctggtggagttatcccatttcacacacaccctggagcttcagaagtcttgattgttacgcaaggaaccataattgccgggttcatttcatcagctaacacagtttatctgaaaacccttaagatgggagatcttatggtgttccctcaagggttattgcactttcaagtgaatggaggtaatacttcagcaattgccttccctagcttcagcagtccaagccccggtctgcagattctggactttgcacttttccaaaacgatttgcctacatcattgatagcaatgactactttcctcgatgttgctcagatcaagaaacttaagggtgttctaggtgagctctctctctccttccctccccaatggcctccagtacgcccggtctccctacgccgtcgtttctgcgcttcttcgccggagcgggagcttcgaatcgactctgtagagatggagagatctggtagaggcggcagtgatttccgagactttctttggagatcctcaggaggtccgatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

266

Amino Acids

28.39

Weight (kDa)

7.72

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 703
AciI CCGC 2 cut(s) 703, 750
AclWI GGATC 1 cut(s) 774
AcuI CTGAAG 3 cut(s) 303, 450, 472
AfaI GTAC 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 403, 503
AflII CTTAAG 2 cut(s) 398, 602
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 4 cut(s) 232, 273, 280, 310
AluBI AGCT 6 cut(s) 200, 317, 374, 486, 622, 709
AluI AGCT 6 cut(s) 200, 317, 374, 486, 622, 709
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 2 cut(s) 670, 759
AlwI GGATC 1 cut(s) 774
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 4 cut(s) 97, 160, 244, 647
ApeKI GCWGC 4 cut(s) 53, 125, 200, 221
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 2 cut(s) 98, 791
AsuC2I CCSGG 3 cut(s) 358, 504, 662
AsuHPI GGTGA 2 cut(s) 199, 629
AsuII TTCGAA 1 cut(s) 712
AvaII GGWCC 1 cut(s) 791
AvrII CCTAGG 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 784
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 4 cut(s) 40, 112, 187, 208
BccI CCATC 2 cut(s) 397, 724
BceAI ACGGC 2 cut(s) 259, 660
BciT130I CCWGG 4 cut(s) 234, 275, 282, 312
BcnI CCSGG 3 cut(s) 358, 504, 662
BcoDI GTCTC 2 cut(s) 670, 759
BfaI CTAG 4 cut(s) 164, 269, 483, 614
BfmI CTRYAG 5 cut(s) 54, 102, 201, 509, 723
BfrI CTTAAG 2 cut(s) 398, 602
BglI GCCNNNNNGGC 1 cut(s) 105
BglII AGATCT 2 cut(s) 409, 737
BisI GCNGC 5 cut(s) 54, 126, 201, 222, 751
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 5 cut(s) 55, 127, 202, 223, 752
Bme1390I CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 662
Bme18I GGWCC 1 cut(s) 791
BmgT120I GGNCC 2 cut(s) 98, 791
BmiI GGNNCC 3 cut(s) 90, 279, 346
BmrFI CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 662
BmsI GCATC 1 cut(s) 40
BpmI CTGGAG 3 cut(s) 75, 333, 636
Bpu14I TTCGAA 1 cut(s) 712
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 3 cut(s) 358, 504, 662
BsaI GGTCTC 1 cut(s) 670
BsaJI CCNNGG 4 cut(s) 163, 247, 310, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 503
Bse1I ACTGG 1 cut(s) 653
Bse21I CCTNAGG 1 cut(s) 784
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 4 cut(s) 234, 275, 282, 312
BseDI CCNNGG 4 cut(s) 163, 247, 310, 502
BseLI CCNNNNNNNGG 2 cut(s) 403, 503
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 2 cut(s) 602, 798
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 4 cut(s) 40, 112, 187, 208
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 4 cut(s) 99, 162, 246, 649
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 4 cut(s) 357, 504, 662, 698
BslI CCNNNNNNNGG 2 cut(s) 403, 503
BsmAI GTCTC 2 cut(s) 670, 759
BsnI GGCC 4 cut(s) 99, 162, 246, 649
Bso31I GGTCTC 1 cut(s) 670
Bsp119I TTCGAA 1 cut(s) 712
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 4 cut(s) 409, 591, 737, 779
BspACI CCGC 2 cut(s) 703, 750
BspANI GGCC 4 cut(s) 99, 162, 246, 649
BspCNI CTCAG 2 cut(s) 601, 797
BspLI GGNNCC 3 cut(s) 90, 279, 346
BspMAI CTGCAG 4 cut(s) 58, 106, 205, 513
BspPI GGATC 1 cut(s) 774
BspT104I TTCGAA 1 cut(s) 712
BspTI CTTAAG 2 cut(s) 398, 602
BspTNI GGTCTC 1 cut(s) 670
BsrBI CCGCTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 1 cut(s) 653
BssECI CCNNGG 4 cut(s) 163, 247, 310, 502
BssMI GATC 4 cut(s) 409, 591, 737, 779
BssT1I CCWWGG 2 cut(s) 163, 247
Bst2UI CCWGG 4 cut(s) 234, 275, 282, 312
Bst4CI ACNGT 2 cut(s) 139, 382
BstAFI CTTAAG 2 cut(s) 398, 602
BstAPI GCANNNNNTGC 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 712
BstC8I GCNNGC 2 cut(s) 106, 261
BstDEI CTNAG 2 cut(s) 588, 784
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 4 cut(s) 412, 594, 740, 782
BstMAI GTCTC 2 cut(s) 670, 759
BstMBI GATC 4 cut(s) 409, 591, 737, 779
BstMWI GCNNNNNNNGC 4 cut(s) 105, 114, 221, 498
BstNI CCWGG 4 cut(s) 234, 275, 282, 312
BstSCI CCNGG 7 cut(s) 232, 273, 280, 310, 356, 502, 660
BstSFI CTRYAG 5 cut(s) 54, 102, 201, 509, 723
BstV1I GCAGC 4 cut(s) 40, 112, 187, 208
BstX2I RGATCY 3 cut(s) 409, 737, 779
BstYI RGATCY 3 cut(s) 409, 737, 779
Bsu36I CCTNAGG 1 cut(s) 784
BsuRI GGCC 4 cut(s) 99, 162, 246, 649
BtsI GCAGTG 2 cut(s) 63, 760
BtsIMutI CAGTG 2 cut(s) 63, 760
Cac8I GCNNGC 2 cut(s) 106, 261
CaiI CAGNNNCTG 1 cut(s) 517
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 2 cut(s) 98, 791
Csp6I GTAC 1 cut(s) 656
CviQI GTAC 1 cut(s) 656
DdeI CTNAG 2 cut(s) 588, 784
DpnI GATC 4 cut(s) 411, 593, 739, 781
DpnII GATC 4 cut(s) 409, 591, 737, 779
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 2 cut(s) 163, 247
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 791
Eco53kI GAGCTC 1 cut(s) 622
Eco57I CTGAAG 3 cut(s) 303, 450, 472
Eco81I CCTNAGG 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 4 cut(s) 232, 273, 280, 310
EcoT14I CCWWGG 2 cut(s) 163, 247
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 2 cut(s) 163, 247
FaiI YATR 2 cut(s) 350, 416
FauI CCCGC 1 cut(s) 696
Fnu4HI GCNGC 5 cut(s) 54, 126, 201, 222, 751
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 5 cut(s) 54, 126, 201, 222, 751
FspBI CTAG 4 cut(s) 164, 269, 483, 614
GlaI GCGC 1 cut(s) 688
GluI GCNGC 5 cut(s) 54, 126, 201, 222, 751
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 3 cut(s) 75, 333, 636
HaeIII GGCC 4 cut(s) 99, 162, 246, 649
HapII CCGG 4 cut(s) 357, 504, 662, 698
HhaI GCGC 1 cut(s) 689
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 3 cut(s) 514, 714, 719
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 4 cut(s) 357, 504, 662, 698
HphI GGTGA 2 cut(s) 199, 629
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 6 cut(s) 49, 322, 390, 591, 764, 795
Hpy188III TCNNGA 6 cut(s) 92, 269, 328, 518, 595, 786
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 681
HpyAV CCTTC 4 cut(s) 89, 115, 487, 643
HpyCH4III ACNGT 2 cut(s) 139, 382
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 114, 221, 498
HpyF3I CTNAG 2 cut(s) 588, 784
HspAI GCGC 1 cut(s) 687
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 4 cut(s) 409, 591, 737, 779
LmnI GCTCC 5 cut(s) 94, 283, 314, 700, 706
Lsp1109I GCAGC 4 cut(s) 40, 112, 187, 208
LweI GCATC 1 cut(s) 40
MaeI CTAG 4 cut(s) 164, 269, 483, 614
MaeIII GTNAC 4 cut(s) 133, 176, 205, 334
MalI GATC 4 cut(s) 411, 593, 739, 781
MbiI CCGCTC 1 cut(s) 703
MboI GATC 4 cut(s) 409, 591, 737, 779
MboII GAAGA 1 cut(s) 684
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 3 cut(s) 409, 737, 779
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 3 cut(s) 227, 351, 471
MlyI GAGTC 1 cut(s) 713
MnlI CCTC 9 cut(s) 44, 435, 449, 587, 648, 660, 740, 782, 793
MseI TTAA 4 cut(s) 240, 399, 603, 799
MspCI CTTAAG 2 cut(s) 398, 602
MspI CCGG 4 cut(s) 357, 504, 662, 698
MspR9I CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 662
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 4 cut(s) 234, 275, 282, 312
MwoI GCNNNNNNNGC 4 cut(s) 105, 114, 221, 498
NciI CCSGG 3 cut(s) 358, 504, 662
NdeII GATC 4 cut(s) 409, 591, 737, 779
NlaIV GGNNCC 3 cut(s) 90, 279, 346
NmuCI GTSAC 1 cut(s) 205
NspV TTCGAA 1 cut(s) 712
PfeI GAWTC 2 cut(s) 514, 714
PkrI GCNGC 5 cut(s) 55, 127, 202, 223, 752
PleI GAGTC 1 cut(s) 713
PpsI GAGTC 1 cut(s) 713
Psp124BI GAGCTC 1 cut(s) 624
Psp6I CCWGG 4 cut(s) 232, 273, 280, 310
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 4 cut(s) 232, 273, 280, 310
PspN4I GGNNCC 3 cut(s) 90, 279, 346
PspPI GGNCC 2 cut(s) 98, 791
PstI CTGCAG 4 cut(s) 58, 106, 205, 513
PstNI CAGNNNCTG 1 cut(s) 517
PsuI RGATCY 3 cut(s) 409, 737, 779
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
SacI GAGCTC 1 cut(s) 624
SaqAI TTAA 4 cut(s) 240, 399, 603, 799
SatI GCNGC 5 cut(s) 54, 126, 201, 222, 751
Sau3AI GATC 4 cut(s) 409, 591, 737, 779
Sau96I GGNCC 2 cut(s) 98, 791
SbfI CCTGCAGG 1 cut(s) 106
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 7 cut(s) 234, 275, 282, 312, 358, 504, 662
SdaI CCTGCAGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 5 cut(s) 54, 102, 201, 509, 723
SfuI TTCGAA 1 cut(s) 712
SinI GGWCC 1 cut(s) 791
SmlI CTYRAG 3 cut(s) 398, 426, 602
SmoI CTYRAG 3 cut(s) 398, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 3 cut(s) 227, 351, 471
SsiI CCGC 2 cut(s) 703, 750
SspMI CTAG 4 cut(s) 164, 269, 483, 614
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 7 cut(s) 232, 273, 280, 310, 356, 502, 660
StyI CCWWGG 2 cut(s) 163, 247
TaaI ACNGT 2 cut(s) 139, 382
TaqI TCGA 3 cut(s) 579, 712, 717
TasI AATT 3 cut(s) 227, 351, 471
TauI GCSGC 1 cut(s) 753
TfiI GAWTC 2 cut(s) 514, 714
Tru1I TTAA 4 cut(s) 240, 399, 603, 799
Tru9I TTAA 4 cut(s) 240, 399, 603, 799
TscAI CASTG 2 cut(s) 63, 760
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 53, 125, 200, 221
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 352, 357
TspRI CASTG 2 cut(s) 63, 760
Vha464I CTTAAG 2 cut(s) 398, 602
VpaK11BI GGWCC 1 cut(s) 791
XbaI TCTAGA 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 4 cut(s) 164, 269, 483, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.