Rmu_co8274667.1_g000001

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8274667.1
OG0000361
Physical Location & Seq
Reverse (-)
205 .. 819
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8274667.1_g000001.1.cds

Sequence Viewer

Length: 615 bp
atgttttctctcattctctcctcctcctatgctgctgtgcaagacttctgtgttgcagactacagagctccttctggacctgcaggctactcctgcagaaggcctgaaactgttacagtgaatgattttgtatactccggcctaggcgttgccggtaacacctcaaacattttcagagctgcaaacacccctgcgtccgcggctgagtttcctggtgtgaatggccttggcatttcaatgtctcgtgtagacttggctgccggtggtgttgtccctttgcatatacaccccggagcgaatgaagtcttacttgttgcgcaaggaacactagttgccgggttcatatcctcggatcgcaacacagtttatctgaaaactattaacagtggtgatattatggttttccctcaagggttattgcacttccaagtgaatgttggaaatgctacgccagtccttgcatttgctagctacagcagtccaaggccaggtctgcagattgtggactatgcactatttcaaagtaactttcctagtcaattgatagctagcactactttccttggcattcctgaaataagtagacttaaggctgtctttggtagcactaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

204

Amino Acids

21.38

Weight (kDa)

6.25

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 88
AccI GTMKAC 3 cut(s) 132, 249, 583
AccII CGCG 1 cut(s) 200
AciI CCGC 2 cut(s) 198, 200
AclWI GGATC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 99, 488
AflII CTTAAG 1 cut(s) 587
AgsI TTSAA 2 cut(s) 237, 521
AhlI ACTAGT 1 cut(s) 328
AjnI CCWGG 2 cut(s) 211, 487
AluBI AGCT 4 cut(s) 68, 179, 471, 548
AluI AGCT 4 cut(s) 68, 179, 471, 548
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 1 cut(s) 360
AoxI GGCC 4 cut(s) 101, 139, 223, 485
ApeKI GCWGC 3 cut(s) 32, 179, 257
AspA2I CCTAGG 1 cut(s) 142
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 2 cut(s) 291, 337
AsuHPI GGTGA 1 cut(s) 401
AsuNHI GCTAGC 2 cut(s) 467, 548
AvaII GGWCC 1 cut(s) 77
AvrII CCTAGG 1 cut(s) 142
BanII GRGCYC 1 cut(s) 70
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 19, 166, 244
BciT130I CCWGG 2 cut(s) 213, 489
BcnI CCSGG 2 cut(s) 291, 337
BcoDI GTCTC 1 cut(s) 246
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 5 cut(s) 143, 329, 468, 534, 549
BfmI CTRYAG 5 cut(s) 61, 81, 94, 472, 494
BfrI CTTAAG 1 cut(s) 587
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 4 cut(s) 33, 180, 201, 258
BlnI CCTAGG 1 cut(s) 142
BlsI GCNGC 4 cut(s) 34, 181, 202, 259
Bme1390I CCNGG 4 cut(s) 213, 291, 337, 489
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 4 cut(s) 213, 291, 337, 489
BmtI GCTAGC 2 cut(s) 471, 552
BpuEI CTTGAG 1 cut(s) 393
BpuMI CCSGG 2 cut(s) 291, 337
BsaJI CCNNGG 7 cut(s) 142, 198, 226, 289, 348, 482, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 488
Bse118I RCCGGY 2 cut(s) 152, 260
Bse1I ACTGG 1 cut(s) 452
BseBI CCWGG 2 cut(s) 213, 489
BseDI CCNNGG 7 cut(s) 142, 198, 226, 289, 348, 482, 562
BseLI CCNNNNNNNGG 2 cut(s) 99, 488
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 2 cut(s) 10, 13
BseXI GCAGC 3 cut(s) 19, 166, 244
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 4 cut(s) 103, 141, 225, 487
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 5 cut(s) 138, 153, 261, 291, 336
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 99, 488
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 4 cut(s) 103, 141, 225, 487
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 2 cut(s) 198, 200
BspANI GGCC 4 cut(s) 103, 141, 225, 487
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 200
BspMAI CTGCAG 3 cut(s) 85, 98, 498
BspMI ACCTGC 1 cut(s) 88
BspOI GCTAGC 2 cut(s) 471, 552
BspPI GGATC 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 587
BsrFI RCCGGY 2 cut(s) 152, 260
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 2 cut(s) 152, 260
BssECI CCNNGG 7 cut(s) 142, 198, 226, 289, 348, 482, 562
BssMI GATC 1 cut(s) 352
BssNAI GTATAC 1 cut(s) 133
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 4 cut(s) 142, 226, 482, 562
Bst1107I GTATAC 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 2 cut(s) 213, 489
Bst4CI ACNGT 4 cut(s) 112, 118, 364, 386
BstAFI CTTAAG 1 cut(s) 587
BstC8I GCNNGC 3 cut(s) 85, 469, 550
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 198
BstENI CCTNNNNNAGG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 3 cut(s) 93, 200, 493
BstNI CCWGG 2 cut(s) 213, 489
BstSCI CCNGG 4 cut(s) 211, 289, 335, 487
BstSFI CTRYAG 5 cut(s) 61, 81, 94, 472, 494
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 19, 166, 244
BstZ17I GTATAC 1 cut(s) 133
BsuRI GGCC 4 cut(s) 103, 141, 225, 487
BtgI CCRYGG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 123, 391
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 85, 469, 550
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 2 cut(s) 152, 260
Cfr13I GGNCC 1 cut(s) 77
Cfr42I CCGCGG 1 cut(s) 201
CseI GACGC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 4 cut(s) 142, 226, 482, 562
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoNI CCTNNNNNAGG 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 211, 487
EcoT14I CCWWGG 4 cut(s) 142, 226, 482, 562
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 4 cut(s) 142, 226, 482, 562
FaiI YATR 7 cut(s) 30, 133, 282, 284, 344, 398, 510
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 581, 613
FaqI GGGAC 1 cut(s) 257
FblI GTMKAC 3 cut(s) 132, 249, 583
Fnu4HI GCNGC 4 cut(s) 33, 180, 201, 258
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 4 cut(s) 33, 180, 201, 258
FspBI CTAG 5 cut(s) 143, 329, 468, 534, 549
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
GluI GCNGC 4 cut(s) 33, 180, 201, 258
HaeIII GGCC 4 cut(s) 103, 141, 225, 487
HapII CCGG 5 cut(s) 138, 153, 261, 291, 336
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 319
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HpaII CCGG 5 cut(s) 138, 153, 261, 291, 336
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 4 cut(s) 133, 250, 505, 584
Hpy188I TCNGA 3 cut(s) 176, 352, 372
Hpy188III TCNNGA 2 cut(s) 75, 572
Hpy8I GTNNAC 4 cut(s) 133, 250, 505, 584
HpyAV CCTTC 2 cut(s) 81, 93
HpyCH4III ACNGT 4 cut(s) 112, 118, 364, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 200, 493
HpyF3I CTNAG 1 cut(s) 204
HspAI GCGC 1 cut(s) 317
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 2 cut(s) 73, 293
Lsp1109I GCAGC 3 cut(s) 19, 166, 244
MaeI CTAG 5 cut(s) 143, 329, 468, 534, 549
MaeIII GTNAC 3 cut(s) 112, 155, 524
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MfeI CAATTG 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 2 cut(s) 539, 610
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 31, 34, 172, 358, 417
MseI TTAA 3 cut(s) 381, 588, 613
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 587
MspI CCGG 5 cut(s) 138, 153, 261, 291, 336
MspR9I CCNGG 4 cut(s) 213, 291, 337, 489
MunI CAATTG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 2 cut(s) 213, 489
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 93, 200, 493
NciI CCSGG 2 cut(s) 291, 337
NdeII GATC 1 cut(s) 352
NheI GCTAGC 2 cut(s) 467, 548
NsbI TGCGCA 1 cut(s) 318
PceI AGGCCT 1 cut(s) 103
PctI GAATGC 1 cut(s) 567
PkrI GCNGC 4 cut(s) 34, 181, 202, 259
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 211, 487
PspGI CCWGG 2 cut(s) 211, 487
PspPI GGNCC 1 cut(s) 77
PstI CTGCAG 3 cut(s) 85, 98, 498
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 70
SacII CCGCGG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 381, 588, 613
SatI GCNGC 4 cut(s) 33, 180, 201, 258
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 77
SbfI CCTGCAGG 1 cut(s) 85
ScrFI CCNGG 4 cut(s) 213, 291, 337, 489
SdaI CCTGCAGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 70
SetI ASST 7 cut(s) 70, 82, 164, 181, 473, 493, 550
SfcI CTRYAG 5 cut(s) 61, 81, 94, 472, 494
Sfr303I CCGCGG 1 cut(s) 201
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 408, 587
SmoI CTYRAG 2 cut(s) 408, 587
SpeI ACTAGT 1 cut(s) 328
Sse8387I CCTGCAGG 1 cut(s) 85
Sse9I AATT 2 cut(s) 539, 610
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 2 cut(s) 198, 200
SspMI CTAG 5 cut(s) 143, 329, 468, 534, 549
SstI GAGCTC 1 cut(s) 70
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 4 cut(s) 211, 289, 335, 487
StyI CCWWGG 4 cut(s) 142, 226, 482, 562
TaaI ACNGT 4 cut(s) 112, 118, 364, 386
TasI AATT 2 cut(s) 539, 610
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 381, 588, 613
Tru9I TTAA 3 cut(s) 381, 588, 613
TscAI CASTG 2 cut(s) 123, 391
TseI GCWGC 3 cut(s) 32, 179, 257
TspDTI ATGAA 2 cut(s) 315, 331
TspRI CASTG 2 cut(s) 123, 391
Vha464I CTTAAG 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XmaJI CCTAGG 1 cut(s) 142
XmiI GTMKAC 3 cut(s) 132, 249, 583
XspI CTAG 5 cut(s) 143, 329, 468, 534, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.