Rorug02G0046900

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000361
Physical Location & Seq
Reverse (-)
3640696 .. 3643316
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0046900.1

Sequence Viewer

Length: 915 bp
ATGCTCTCTCTACAGTTCTTCCCTCCATTACCTTCCCTCCAAAACCCTAATCCCGACCACACCCACTTCTCCATTCCCATCAAAAACCCCAATTTCACATCCCTCAATCTCCGCCCACTTTCCAAAACCCCCAATTCCAAGCTCTCAATCAAAACCCACTTCAGAAAACTCGTCTGCAATGCGTTGAAGGATTCCGGTAAAGAAAAGAAGGTGTCTTTGGACAGTGGCGGCGGCGGAGACGGCGGAGAAGGCGGTGGCGGTGACGGTGGCGATGATGAGCAAGGGGAGAAGAAAAGTGGGCCCCTGCCGGAATGGTTGAATATAACAACTGATGATGCCAAGACGGTGTTTGCGGCAATTGCAGTATCGCTTGCGTTTCGGTCTTTCATAGCTGAGCCGAGGTTTATTCCTTCCTTGTCAATGTACCCTACTTTGGATGTTGGGGATAGAATTGTAGCTGAAAAGGTTTCATATTACTTCAGAAAGCCATGTGCCAATGATATAGTTATCTTTAAAAGTCCACCGGTCCTTCAGGAAGTAGGATATACTGACCTTGACGTCTTCATTAAACGAATAGTGGCGAAGGAAGGTGATACCGTAGAGGTCCGCAATGGGAAGCTCATAGTTAATGGGGTGGAGAGAAATGAAAAATTCATCCTTGAACCACCTTCTTATAATATGACGCCTATTACTGTGCCAGAGAACTCTGTTTTTGTGATGGGTGACAATAGAAATAACAGCTATGATTCACACGTATGGGGTCCACTGCCAGCCAAGAACATTTTAGGCCGATCTATCTTTCGGTACTGGCCCCTGAAAAGGATTGGCGCCACGGTTCTTGAGACTGGTTGTGCTGTTGACAAGCAAGAGAGCGTTCCAGCGTCTCAACCAAAGGAAGGTGGATCATTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

304

Amino Acids

33.29

Weight (kDa)

7.67

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 113 - 270 9.1e-43 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AasI GACNNNNNNGTC 1 cut(s) 557
AatII GACGTC 1 cut(s) 561
AccB1I GGYRCC 1 cut(s) 827
AciI CCGC 9 cut(s) 112, 228, 231, 234, 243, 252, 258, 353, 607
AclWI GGATC 1 cut(s) 910
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 3 cut(s) 145, 463, 515
AcyI GRCGYC 3 cut(s) 558, 683, 828
AfaI GTAC 2 cut(s) 425, 806
AfiI CCNNNNNNNGG 3 cut(s) 433, 819, 896
AflIII ACRYGT 1 cut(s) 751
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 4 cut(s) 187, 319, 662, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 5 cut(s) 142, 392, 458, 619, 741
AluI AGCT 5 cut(s) 142, 392, 458, 619, 741
Alw26I GTCTC 3 cut(s) 231, 836, 888
AlwI GGATC 1 cut(s) 910
AoxI GGCC 3 cut(s) 299, 787, 809
ApaI GGGCCC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 650
AsiGI ACCGGT 1 cut(s) 523
AspLEI GCGC 1 cut(s) 830
AspS9I GGNCC 6 cut(s) 299, 300, 526, 604, 761, 810
AsuHPI GGTGA 3 cut(s) 272, 602, 734
AvaII GGWCC 3 cut(s) 526, 604, 761
BaeGI GKGCMC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 827
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 553
BccI CCATC 2 cut(s) 86, 712
BceAI ACGGC 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 231, 836, 888
BfmI CTRYAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 831
BisI GCNGC 3 cut(s) 229, 232, 354
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 3 cut(s) 230, 233, 355
Bme18I GGWCC 3 cut(s) 526, 604, 761
BmgT120I GGNCC 6 cut(s) 299, 300, 526, 604, 761, 810
BmiI GGNNCC 5 cut(s) 301, 302, 762, 812, 829
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 553
Bpu1102I GCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 860
BsaAI YACGTR 1 cut(s) 754
BsaHI GRCGYC 3 cut(s) 558, 683, 828
BsaJI CCNNGG 2 cut(s) 398, 831
BsaWI WCCGGW 2 cut(s) 194, 523
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 819, 896
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 2 cut(s) 812, 850
Bse3DI GCAATG 2 cut(s) 184, 616
BseDI CCNNGG 2 cut(s) 398, 831
BseGI GGATG 3 cut(s) 98, 442, 654
BseLI CCNNNNNNNGG 3 cut(s) 433, 819, 896
BseMI GCAATG 2 cut(s) 184, 616
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 812, 850
BseSI GKGCMC 1 cut(s) 303
BshFI GGCC 3 cut(s) 301, 789, 811
BshNI GGYRCC 1 cut(s) 827
BshTI ACCGGT 1 cut(s) 523
BsiSI CCGG 3 cut(s) 195, 308, 524
BslI CCNNNNNNNGG 3 cut(s) 433, 819, 896
BsmAI GTCTC 3 cut(s) 231, 836, 888
BsmBI CGTCTC 2 cut(s) 231, 888
BsnI GGCC 3 cut(s) 301, 789, 811
Bsp120I GGGCCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 791, 902
Bsp1720I GCTNAGC 1 cut(s) 393
BspACI CCGC 9 cut(s) 112, 228, 231, 234, 243, 252, 258, 353, 607
BspANI GGCC 3 cut(s) 301, 789, 811
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 5 cut(s) 301, 302, 762, 812, 829
BspPI GGATC 1 cut(s) 910
BspT107I GGYRCC 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 184, 616
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 2 cut(s) 812, 850
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 2 cut(s) 398, 831
BssMI GATC 2 cut(s) 791, 902
BssNI GRCGYC 3 cut(s) 558, 683, 828
Bst4CI ACNGT 7 cut(s) 15, 224, 266, 346, 598, 694, 835
BstACI GRCGYC 3 cut(s) 558, 683, 828
BstBAI YACGTR 1 cut(s) 754
BstC8I GCNNGC 2 cut(s) 372, 771
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 3 cut(s) 98, 442, 654
BstH2I RGCGCY 1 cut(s) 831
BstHHI GCGC 1 cut(s) 830
BstKTI GATC 2 cut(s) 794, 905
BstMAI GTCTC 3 cut(s) 231, 836, 888
BstMBI GATC 2 cut(s) 791, 902
BstMWI GCNNNNNNNGC 3 cut(s) 240, 249, 359
BstSFI CTRYAG 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 553
BsuRI GGCC 3 cut(s) 301, 789, 811
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 3 cut(s) 98, 442, 654
BtsI GCAGTG 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 229, 764
Cac8I GCNNGC 2 cut(s) 372, 771
CfoI GCGC 1 cut(s) 830
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 6 cut(s) 299, 300, 526, 604, 761, 810
CseI GACGC 2 cut(s) 691, 870
Csp6I GTAC 2 cut(s) 424, 805
CspAI ACCGGT 1 cut(s) 523
CspCI CAANNNNNGTGG 2 cut(s) 820, 855
CviAII CATG 1 cut(s) 489
CviQI GTAC 2 cut(s) 424, 805
DdeI CTNAG 1 cut(s) 393
DinI GGCGCC 1 cut(s) 829
DpnI GATC 2 cut(s) 793, 904
DpnII GATC 2 cut(s) 791, 902
DraI TTTAAA 1 cut(s) 514
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
EciI GGCGGA 3 cut(s) 101, 249, 258
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 3 cut(s) 526, 604, 761
Eco57I CTGAAG 3 cut(s) 145, 463, 515
EcoO109I RGGNCCY 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 303
EgeI GGCGCC 1 cut(s) 829
EheI GGCGCC 1 cut(s) 829
Esp3I CGTCTC 2 cut(s) 231, 888
FaeI CATG 1 cut(s) 492
FatI CATG 1 cut(s) 488
Fnu4HI GCNGC 3 cut(s) 229, 232, 354
FokI GGATG 3 cut(s) 85, 449, 641
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 229, 232, 354
GlaI GCGC 1 cut(s) 829
GluI GCNGC 3 cut(s) 229, 232, 354
HaeII RGCGCY 1 cut(s) 831
HaeIII GGCC 3 cut(s) 301, 789, 811
HapII CCGG 3 cut(s) 195, 308, 524
HgaI GACGC 2 cut(s) 691, 870
HhaI GCGC 1 cut(s) 830
Hin1I GRCGYC 3 cut(s) 558, 683, 828
Hin1II CATG 1 cut(s) 492
Hin6I GCGC 1 cut(s) 828
HinP1I GCGC 1 cut(s) 828
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 2 cut(s) 191, 746
HpaII CCGG 3 cut(s) 195, 308, 524
HphI GGTGA 3 cut(s) 272, 602, 734
Hpy166II GTNNAC 3 cut(s) 521, 764, 859
Hpy188I TCNGA 2 cut(s) 164, 482
Hpy188III TCNNGA 3 cut(s) 53, 533, 839
Hpy8I GTNNAC 3 cut(s) 521, 764, 859
HpyCH4III ACNGT 7 cut(s) 15, 224, 266, 346, 598, 694, 835
HpyCH4IV ACGT 2 cut(s) 558, 753
HpyCH4V TGCA 2 cut(s) 177, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 249, 359
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 2 cut(s) 558, 753
Hsp92I GRCGYC 3 cut(s) 558, 683, 828
Hsp92II CATG 1 cut(s) 492
HspAI GCGC 1 cut(s) 828
KasI GGCGCC 1 cut(s) 827
Kzo9I GATC 2 cut(s) 791, 902
LweI GCATC 1 cut(s) 325
MaeII ACGT 2 cut(s) 558, 753
MaeIII GTNAC 2 cut(s) 260, 722
MalI GATC 2 cut(s) 793, 904
MboI GATC 2 cut(s) 791, 902
MboII GAAGA 3 cut(s) 10, 301, 553
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 6 cut(s) 91, 133, 357, 450, 650, 910
Mly113I GGCGCC 1 cut(s) 828
MnlI CCTC 5 cut(s) 33, 47, 113, 393, 595
MseI TTAA 3 cut(s) 513, 567, 627
MslI CAYNNNNRTG 1 cut(s) 754
MspI CCGG 3 cut(s) 195, 308, 524
MunI CAATTG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 240, 249, 359
NarI GGCGCC 1 cut(s) 828
NdeII GATC 2 cut(s) 791, 902
NlaIII CATG 1 cut(s) 492
NlaIV GGNNCC 5 cut(s) 301, 302, 762, 812, 829
NmeAIII GCCGAG 1 cut(s) 423
NmuCI GTSAC 2 cut(s) 260, 722
PfeI GAWTC 2 cut(s) 191, 746
PinAI ACCGGT 1 cut(s) 523
PkrI GCNGC 3 cut(s) 230, 233, 355
PluTI GGCGCC 1 cut(s) 831
Ppu21I YACGTR 1 cut(s) 754
PsiI TTATAA 1 cut(s) 675
PspN4I GGNNCC 5 cut(s) 301, 302, 762, 812, 829
PspOMI GGGCCC 1 cut(s) 299
PspPI GGNCC 6 cut(s) 299, 300, 526, 604, 761, 810
RsaI GTAC 2 cut(s) 425, 806
RsaNI GTAC 2 cut(s) 424, 805
RseI CAYNNNNRTG 1 cut(s) 754
SaqAI TTAA 3 cut(s) 513, 567, 627
SatI GCNGC 3 cut(s) 229, 232, 354
Sau3AI GATC 2 cut(s) 791, 902
Sau96I GGNCC 6 cut(s) 299, 300, 526, 604, 761, 810
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 829
SinI GGWCC 3 cut(s) 526, 604, 761
SmiMI CAYNNNNRTG 1 cut(s) 754
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
Sse9I AATT 6 cut(s) 91, 133, 357, 450, 650, 910
SsiI CCGC 9 cut(s) 112, 228, 231, 234, 243, 252, 258, 353, 607
SspDI GGCGCC 1 cut(s) 827
TaaI ACNGT 7 cut(s) 15, 224, 266, 346, 598, 694, 835
TaiI ACGT 2 cut(s) 561, 756
TaqII GACCGA 1 cut(s) 369
TasI AATT 6 cut(s) 91, 133, 357, 450, 650, 910
TauI GCSGC 3 cut(s) 231, 234, 356
TfiI GAWTC 2 cut(s) 191, 746
Tru1I TTAA 3 cut(s) 513, 567, 627
Tru9I TTAA 3 cut(s) 513, 567, 627
TscAI CASTG 2 cut(s) 229, 771
TseFI GTSAC 2 cut(s) 260, 722
Tsp45I GTSAC 2 cut(s) 260, 722
TspDTI ATGAA 5 cut(s) 376, 459, 553, 643, 660
TspRI CASTG 2 cut(s) 229, 771
VpaK11BI GGWCC 3 cut(s) 526, 604, 761
XapI RAATTY 1 cut(s) 650
ZraI GACGTC 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.