RchiOBHm_Chr2g0095301

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000361
Physical Location & Seq
Reverse (-)
8251042 .. 8254295
3254 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47028

Sequence Viewer

Length: 786 bp
ATGCAGCTTCGAGGAAATTACACAGACGCGTTAATGAGTTTTTGCCCAGCTTTGGCCATTTCAAGAGTGCAAATATTGCAAATGGAGGACTTCTGTGTTGCGGACTACGCAGCCCCTCAAAGCCCTGCAGGCTACTCTTGCAAAAACCCTGCAAATGTTACGGTAGATGATTTCGTATACACTGGTCTTGAAGTTGCCGGCAATACCTCAAATATTATTAAAGCTGGACTCAAGCCACCATTTGTTTCTCAGTTTCCTGGTCTGAATGGACTTGGCCTTTCACTGGCTCGGGCAGACTTGGCTGTTGGTGGAGTCATCCCACTTCACACACACCAGAGAGCTACAGAAATCATACTTATTGTCGAAGGAACAGTAGTTACCGGGTTCATTGACTCAAATAACAAACTTTATTTAAAAACTCTGAAGAAGGGTGACATTATGGTTTTGCCTTCAGGGTTGTTTCACTTCCAAGTGAATGGAGGTGATACTCCAGTACTTGAATTTGCTGCCTTCAGTAGTGCAAACCCTGGTGTGCAGATTCTGGAGAATTCACTGTTTCAAAACGATTTACCTACAGAATTGATACACAGACTACATTCCTCGAAGCTGCTTAGATTAAGAAATTTGAGGGTTTTCTTGGTGGTACTAATTGATACACGGGATTATTACATGTCTTTCTATGAATCCCTTGTGGAACTTTTCTGTTCTTACTGCTTGAGTTGTACTGAAGGCACATGTAGTTGCATCTCATTTAATAAATGCCTTTACACAAGAAAGTTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

261

Amino Acids

28.69

Weight (kDa)

5.95

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 67 - 196 6.9e-33 Cupin
Cupin_2 PF07883 98 - 165 4e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 3 cut(s) 500, 547, 622
AcuI CTGAAG 4 cut(s) 435, 443, 496, 747
AfaI GTAC 3 cut(s) 495, 645, 724
AfiI CCNNNNNNNGG 2 cut(s) 52, 283
AflIII ACRYGT 3 cut(s) 27, 669, 734
AgsI TTSAA 4 cut(s) 63, 191, 500, 560
AjnI CCWGG 2 cut(s) 256, 526
AluBI AGCT 5 cut(s) 7, 50, 224, 341, 607
AluI AGCT 5 cut(s) 7, 50, 224, 341, 607
AlwNI CAGNNNCTG 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 2 cut(s) 54, 274
ApeKI GCWGC 4 cut(s) 4, 110, 506, 607
ApoI RAATTY 3 cut(s) 500, 547, 622
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 443, 494
AvaI CYCGRG 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 4 cut(s) 16, 122, 493, 594
BciT130I CCWGG 2 cut(s) 258, 528
BcnI CCSGG 1 cut(s) 382
BfmI CTRYAG 3 cut(s) 126, 342, 573
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 4 cut(s) 5, 111, 507, 608
BlsI GCNGC 4 cut(s) 6, 112, 508, 609
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 3 cut(s) 258, 382, 528
BmeT110I CYCGRG 1 cut(s) 288
BmrFI CCNGG 3 cut(s) 258, 382, 528
BmsI GCATC 1 cut(s) 753
BpmI CTGGAG 2 cut(s) 474, 563
BpuEI CTTGAG 2 cut(s) 215, 736
BpuMI CCSGG 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 526
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 283
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 187, 288, 491
BseBI CCWGG 2 cut(s) 258, 528
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 52, 283
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 3 cut(s) 187, 288, 491
BseXI GCAGC 4 cut(s) 16, 122, 493, 594
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 56, 276
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 2 cut(s) 198, 381
BslI CCNNNNNNNGG 2 cut(s) 52, 283
BsnI GGCC 2 cut(s) 56, 276
BsoBI CYCGRG 1 cut(s) 288
BspACI CCGC 1 cut(s) 101
BspANI GGCC 2 cut(s) 56, 276
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 29
BspMAI CTGCAG 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 3 cut(s) 187, 288, 491
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 526
BssNAI GTATAC 1 cut(s) 178
Bst1107I GTATAC 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 258, 528
Bst4CI ACNGT 3 cut(s) 163, 373, 555
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 130, 199
BstDEI CTNAG 2 cut(s) 249, 611
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 5 cut(s) 76, 107, 129, 138, 299
BstNI CCWGG 2 cut(s) 258, 528
BstNSI RCATGY 2 cut(s) 673, 738
BstSCI CCNGG 3 cut(s) 256, 380, 526
BstSFI CTRYAG 3 cut(s) 126, 342, 573
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 4 cut(s) 16, 122, 493, 594
BstXI CCANNNNNNTGG 1 cut(s) 476
BstZ17I GTATAC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 56, 276
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 3 cut(s) 180, 281, 551
Cac8I GCNNGC 2 cut(s) 130, 199
CaiI CAGNNNCTG 1 cut(s) 541
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 494, 644, 723
CviAII CATG 2 cut(s) 670, 735
CviQI GTAC 3 cut(s) 494, 644, 723
DdeI CTNAG 2 cut(s) 249, 611
DraI TTTAAA 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 54
Eco57I CTGAAG 4 cut(s) 435, 443, 496, 747
Eco88I CYCGRG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 256, 526
FaeI CATG 2 cut(s) 673, 738
FaiI YATR 6 cut(s) 178, 353, 440, 671, 681, 736
FatI CATG 2 cut(s) 669, 734
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 5, 111, 507, 608
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 4 cut(s) 5, 111, 507, 608
GluI GCNGC 4 cut(s) 5, 111, 507, 608
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 2 cut(s) 474, 563
HaeIII GGCC 2 cut(s) 56, 276
HapII CCGG 2 cut(s) 198, 381
HgaI GACGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 673, 738
HinfI GANTC 5 cut(s) 228, 312, 392, 538, 683
HpaII CCGG 2 cut(s) 198, 381
HphI GGTGA 2 cut(s) 443, 494
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 264, 423
Hpy188III TCNNGA 3 cut(s) 63, 188, 542
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 5 cut(s) 359, 421, 459, 520, 722
HpyCH4III ACNGT 3 cut(s) 163, 373, 555
HpyCH4V TGCA 9 cut(s) 4, 70, 79, 128, 141, 152, 521, 535, 744
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 107, 129, 138, 299
HpyF3I CTNAG 2 cut(s) 249, 611
Hsp92II CATG 2 cut(s) 673, 738
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Lsp1109I GCAGC 4 cut(s) 16, 122, 493, 594
LweI GCATC 1 cut(s) 753
MaeIII GTNAC 3 cut(s) 157, 376, 431
MboII GAAGA 1 cut(s) 436
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 6 cut(s) 16, 500, 547, 578, 622, 648
MluI ACGCGT 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 3 cut(s) 222, 321, 386
MnlI CCTC 7 cut(s) 5, 79, 126, 217, 473, 610, 621
Mox20I TGGCCA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 56
MseI TTAA 6 cut(s) 32, 219, 413, 617, 753, 784
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 2 cut(s) 198, 381
MspR9I CCNGG 3 cut(s) 258, 382, 528
MvaI CCWGG 2 cut(s) 258, 528
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 5 cut(s) 76, 107, 129, 138, 299
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 382
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 673, 738
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 2 cut(s) 673, 738
PciI ACATGT 2 cut(s) 669, 734
PdiI GCCGGC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 538, 683
PkrI GCNGC 4 cut(s) 6, 112, 508, 609
PleI GAGTC 3 cut(s) 222, 320, 386
PpsI GAGTC 3 cut(s) 222, 320, 386
PscI ACATGT 2 cut(s) 669, 734
Psp6I CCWGG 2 cut(s) 256, 526
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 256, 526
PsrI GAACNNNNNNTAC 2 cut(s) 361, 393
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 541
RsaI GTAC 3 cut(s) 495, 645, 724
RsaNI GTAC 3 cut(s) 494, 644, 723
SaqAI TTAA 6 cut(s) 32, 219, 413, 617, 753, 784
SatI GCNGC 4 cut(s) 5, 111, 507, 608
SbfI CCTGCAGG 1 cut(s) 130
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 3 cut(s) 222, 321, 386
ScrFI CCNGG 3 cut(s) 258, 382, 528
SdaI CCTGCAGG 1 cut(s) 130
SetI ASST 8 cut(s) 9, 52, 209, 226, 343, 484, 574, 609
SfaNI GCATC 1 cut(s) 753
SfcI CTRYAG 3 cut(s) 126, 342, 573
SmlI CTYRAG 2 cut(s) 230, 715
SmoI CTYRAG 2 cut(s) 230, 715
Sse8387I CCTGCAGG 1 cut(s) 130
Sse9I AATT 6 cut(s) 16, 500, 547, 578, 622, 648
SsiI CCGC 1 cut(s) 101
SspI AATATT 2 cut(s) 75, 214
StyD4I CCNGG 3 cut(s) 256, 380, 526
TaaI ACNGT 3 cut(s) 163, 373, 555
TaqI TCGA 3 cut(s) 10, 363, 602
TasI AATT 6 cut(s) 16, 500, 547, 578, 622, 648
TatI WGTACW 2 cut(s) 493, 722
TfiI GAWTC 2 cut(s) 538, 683
Tru1I TTAA 6 cut(s) 32, 219, 413, 617, 753, 784
Tru9I TTAA 6 cut(s) 32, 219, 413, 617, 753, 784
TscAI CASTG 3 cut(s) 187, 288, 558
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 4 cut(s) 4, 110, 506, 607
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 376, 696
TspRI CASTG 3 cut(s) 187, 288, 558
XapI RAATTY 3 cut(s) 500, 547, 622
XceI RCATGY 2 cut(s) 673, 738
XmiI GTMKAC 1 cut(s) 177
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.