Rorug02G0049100

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000361
Physical Location & Seq
Reverse (-)
3800134 .. 3803483
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0049100.1

Sequence Viewer

Length: 1320 bp
ATGGACTTTCTGAAGGAGCTGGAAGGCAAACGAGTGCATGATCCTTTGATTCATTTCCAATCCAAAACAGACATGGCAGCTGCTAAATCGACAAGGCGTATATGGGTCCCGGGGCCAGTGATAGTGGGAGCAGGTCCTTCCGGCTTAGCTGCCGCGGCTTGTCTCAAGGAAAAAGGTATTCCGAGCTTAATCCTAGAAAGGACCAACTGCATAGCTTCGTTGTGGCAGCTTAAGACCTACGACCGTCTCCGTCTTCATCTCCCAAAACAGTTCTGCGAGCTCATACTCATGCCATTCCCTGCAGATTTCCCAACCTACCCAACCAAGCAGCAGTTCGTGAATTACTTAAACGATTATGCCGAGCGCTTTGATCTAAAGCCGGCTTTCAACACGACGGTGGTGAGTGCCAAGTACGATAGTCGTTGCGGGCTTTGGTTTGTTAAGACTTTGGGGTTGAAAAATGAGGAGGCGATTGAGTATGTTTGTCAGTGGCTGATCGTCGCCACCGGAGAAAATGCCCAGGAGGTTGTGCCGGAGTTTGAAGGAGTGAGGGACTTTGGTGGGCCCATTGTCCATACCAGCTCTTACAAGAGCGGCGAGCGCTTCGGGGGGAAGAAGGTCCTAGTGGTCGGATGTGGGAATTCAGGCATGGAGGTTTGCTTGGATCTCTGCGATTATAATGCAAAGCCTTCCCTTGTGGTTAAAAATTCGGTGCACATCTTGCCGCAAGAGATACTGGGAATATCGACTTTTGGGCTGTCGATGTGGTTGCTCAAGTGGTTTCCCATGCGCCTTGTGGATCGCTTCTTGCTTCTCGTCTCACGCGTTATGCTGGGCGACACCGCTCGCTTTGGAATCAGCCGCCCTCACCGTGGCCCTCTCGAACTCAAGTCCGTCTCTGGCAAGACACCTGTGCTCGATGTTGGCACCCTCGCTAAGATCCGAAGTGGTCACATCAAGGTGTGCAAGGCAATCAAGCAAGTAAAACATCAATCCGTAGAGTTTATAGACGGGAAAGTGGAGTGTTTCGACGCCATTATTTTGGCAACCGGTTACAGAAGTAATGTGATGTCTTGGTTGAAGGAAACGAGCATGTTTAGTGAAAAAGATGGATTGCCGCGGAAGGCTTTTCCGAACGGATGGAAAGGGGAGAGCGGGTTGTATTCGGTGGGGTTTACACAGCGTGGGCTGTTAGGCGCTTCTCTGGATGCAAAGAGAATTGCAGAAGATATCGAGCATCGCTGGAAAGCTGATAACGCCACCCATCTCATGCCCCGCTTGGTCACTTGTGCTTGTGCTTCTCCACTAGCAGAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

439

Amino Acids

48.84

Weight (kDa)

9.01

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_3 PF13738 40 - 237 3e-22 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 40 - 234 2.1e-10 Pyridine nucleotide-disulphide oxidoreductase
FMO-like PF00743 41 - 394 6.6e-30 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 105 - 231 8.6e-12 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 926
AccBSI CCGCTC 3 cut(s) 594, 845, 1155
AccII CGCG 3 cut(s) 155, 825, 1120
AclWI GGATC 4 cut(s) 35, 672, 807, 934
AcsI RAATTY 2 cut(s) 640, 706
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 1032
AdeI CACNNNGTG 1 cut(s) 1184
AfaI GTAC 1 cut(s) 413
AfeI AGCGCT 2 cut(s) 365, 602
AfiI CCNNNNNNNGG 1 cut(s) 872
AflII CTTAAG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 823
AgeI ACCGGT 1 cut(s) 1049
AgsI TTSAA 4 cut(s) 388, 457, 542, 1081
AjnI CCWGG 1 cut(s) 519
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 9 cut(s) 19, 80, 149, 186, 215, 229, 280, 582, 1250
AluI AGCT 9 cut(s) 19, 80, 149, 186, 215, 229, 280, 582, 1250
Alw21I GWGCWC 3 cut(s) 282, 717, 918
Alw26I GTCTC 4 cut(s) 167, 251, 823, 901
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 4 cut(s) 35, 672, 807, 934
AlwNI CAGNNNCTG 1 cut(s) 493
Ama87I CYCGRG 1 cut(s) 109
Aor51HI AGCGCT 2 cut(s) 365, 602
AoxI GGCC 3 cut(s) 113, 563, 874
ApaI GGGCCC 1 cut(s) 567
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 5 cut(s) 77, 80, 149, 226, 328
ApoI RAATTY 2 cut(s) 640, 706
AsiGI ACCGGT 1 cut(s) 1049
AspLEI GCGC 4 cut(s) 366, 603, 792, 1199
AspS9I GGNCC 8 cut(s) 106, 113, 134, 201, 563, 564, 619, 875
AsuC2I CCSGG 2 cut(s) 110, 111
AsuHPI GGTGA 2 cut(s) 412, 860
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 4 cut(s) 106, 134, 201, 619
BaeGI GKGCMC 2 cut(s) 567, 717
BanI GGYRCC 1 cut(s) 926
BanII GRGCYC 2 cut(s) 282, 567
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 3 cut(s) 282, 717, 918
BbvI GCAGC 5 cut(s) 67, 89, 136, 238, 340
BccI CCATC 3 cut(s) 1103, 1134, 1272
BcgI CGANNNNNNTGC 4 cut(s) 662, 696, 751, 785
BciT130I CCWGG 1 cut(s) 521
BcnI CCSGG 2 cut(s) 110, 111
BcoDI GTCTC 4 cut(s) 167, 251, 823, 901
BfaI CTAG 4 cut(s) 194, 623, 1307, 1318
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 3 cut(s) 367, 604, 1200
BfrI CTTAAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 122
BlpI GCTNAGC 1 cut(s) 145
Bme1390I CCNGG 3 cut(s) 110, 111, 521
Bme18I GGWCC 4 cut(s) 106, 134, 201, 619
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 8 cut(s) 106, 113, 134, 201, 563, 564, 619, 875
BmiI GGNNCC 5 cut(s) 107, 108, 114, 565, 928
BmrFI CCNGG 3 cut(s) 110, 111, 521
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 2 cut(s) 1198, 1246
BmuI ACTGGG 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 145
BpuEI CTTGAG 3 cut(s) 149, 758, 872
BpuMI CCSGG 2 cut(s) 110, 111
BsaHI GRCGYC 1 cut(s) 1032
BsaJI CCNNGG 6 cut(s) 109, 110, 153, 519, 871, 1118
BsaWI WCCGGW 2 cut(s) 506, 1049
BsaXI ACNNNNNCTCC 2 cut(s) 1142, 1172
Bsc4I CCNNNNNNNGG 1 cut(s) 872
Bse118I RCCGGY 2 cut(s) 379, 1049
Bse1I ACTGG 2 cut(s) 116, 741
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 6 cut(s) 109, 110, 153, 519, 871, 1118
BseGI GGATG 3 cut(s) 638, 1145, 1213
BseLI CCNNNNNNNGG 1 cut(s) 872
BseNI ACTGG 2 cut(s) 116, 741
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 2 cut(s) 567, 717
BseXI GCAGC 5 cut(s) 67, 89, 136, 238, 340
BseYI CCCAGC 1 cut(s) 832
Bsh1236I CGCG 3 cut(s) 155, 825, 1120
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 3 cut(s) 115, 565, 876
BshNI GGYRCC 1 cut(s) 926
BshTI ACCGGT 1 cut(s) 1049
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 3 cut(s) 282, 717, 918
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 6 cut(s) 110, 141, 380, 507, 533, 1050
BslFI GGGAC 2 cut(s) 92, 566
BslI CCNNNNNNNGG 1 cut(s) 872
BsmAI GTCTC 4 cut(s) 167, 251, 823, 901
BsmBI CGTCTC 3 cut(s) 251, 823, 901
BsmFI GGGAC 2 cut(s) 92, 566
BsnI GGCC 3 cut(s) 115, 565, 876
BsoBI CYCGRG 1 cut(s) 109
Bsp120I GGGCCC 1 cut(s) 563
Bsp1286I GDGCHC 4 cut(s) 282, 567, 717, 918
Bsp143I GATC 6 cut(s) 40, 370, 495, 664, 799, 939
Bsp1720I GCTNAGC 1 cut(s) 145
BspANI GGCC 3 cut(s) 115, 565, 876
BspFNI CGCG 3 cut(s) 155, 825, 1120
BspLI GGNNCC 5 cut(s) 107, 108, 114, 565, 928
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 4 cut(s) 35, 672, 807, 934
BspT107I GGYRCC 1 cut(s) 926
BspTI CTTAAG 1 cut(s) 230
BsrBI CCGCTC 3 cut(s) 594, 845, 1155
BsrFI RCCGGY 2 cut(s) 379, 1049
BsrI ACTGG 2 cut(s) 116, 741
BssAI RCCGGY 2 cut(s) 379, 1049
BssECI CCNNGG 6 cut(s) 109, 110, 153, 519, 871, 1118
BssMI GATC 6 cut(s) 40, 370, 495, 664, 799, 939
BssNI GRCGYC 1 cut(s) 1032
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 4 cut(s) 245, 270, 397, 872
BstACI GRCGYC 1 cut(s) 1032
BstAFI CTTAAG 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 721
BstC8I GCNNGC 5 cut(s) 278, 381, 428, 599, 847
BstDEI CTNAG 2 cut(s) 145, 936
BstDSI CCRYGG 3 cut(s) 153, 871, 1118
BstF5I GGATG 3 cut(s) 638, 1145, 1213
BstFNI CGCG 3 cut(s) 155, 825, 1120
BstH2I RGCGCY 3 cut(s) 367, 604, 1200
BstHHI GCGC 4 cut(s) 366, 603, 792, 1199
BstKTI GATC 6 cut(s) 43, 373, 498, 667, 802, 942
BstMAI GTCTC 4 cut(s) 167, 251, 823, 901
BstMBI GATC 6 cut(s) 40, 370, 495, 664, 799, 939
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 4 cut(s) 155, 600, 721, 1256
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 1096
BstSCI CCNGG 3 cut(s) 108, 109, 519
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 2 cut(s) 567, 717
BstUI CGCG 3 cut(s) 155, 825, 1120
BstV1I GCAGC 5 cut(s) 67, 89, 136, 238, 340
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 664, 939
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstYI RGATCY 2 cut(s) 664, 939
BsuRI GGCC 3 cut(s) 115, 565, 876
BtgI CCRYGG 3 cut(s) 153, 871, 1118
BtgZI GCGATG 1 cut(s) 1223
BtsCI GGATG 3 cut(s) 638, 1145, 1213
BtsIMutI CAGTG 2 cut(s) 123, 494
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 5 cut(s) 278, 381, 428, 599, 847
CaiI CAGNNNCTG 1 cut(s) 493
CfoI GCGC 4 cut(s) 366, 603, 792, 1199
Cfr10I RCCGGY 2 cut(s) 379, 1049
Cfr13I GGNCC 8 cut(s) 106, 113, 134, 201, 563, 564, 619, 875
Cfr42I CCGCGG 2 cut(s) 156, 1121
Cfr9I CCCGGG 1 cut(s) 109
CseI GACGC 1 cut(s) 1040
Csp6I GTAC 1 cut(s) 412
CspAI ACCGGT 1 cut(s) 1049
CviAII CATG 7 cut(s) 38, 73, 289, 649, 787, 1093, 1270
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 145, 936
DpnI GATC 6 cut(s) 42, 372, 497, 666, 801, 941
DpnII GATC 6 cut(s) 40, 370, 495, 664, 799, 939
DraIII CACNNNGTG 1 cut(s) 1184
Ecl136II GAGCTC 1 cut(s) 280
Eco24I GRGCYC 2 cut(s) 282, 567
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 4 cut(s) 106, 134, 201, 619
Eco47III AGCGCT 2 cut(s) 365, 602
Eco53kI GAGCTC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 3 cut(s) 106, 134, 619
EcoRI GAATTC 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 519
EcoRV GATATC 1 cut(s) 1231
EcoT38I GRGCYC 2 cut(s) 282, 567
Esp3I CGTCTC 3 cut(s) 251, 823, 901
FaeI CATG 7 cut(s) 41, 76, 292, 652, 790, 1096, 1273
FaqI GGGAC 2 cut(s) 92, 566
FatI CATG 7 cut(s) 37, 72, 288, 648, 786, 1092, 1269
FauI CCCGC 3 cut(s) 419, 1148, 1283
FokI GGATG 3 cut(s) 645, 1152, 1220
FriOI GRGCYC 2 cut(s) 282, 567
FspBI CTAG 4 cut(s) 194, 623, 1307, 1318
GlaI GCGC 4 cut(s) 365, 602, 791, 1198
GsaI CCCAGC 1 cut(s) 836
HaeII RGCGCY 3 cut(s) 367, 604, 1200
HaeIII GGCC 3 cut(s) 115, 565, 876
HapII CCGG 6 cut(s) 110, 141, 380, 507, 533, 1050
HgaI GACGC 1 cut(s) 1040
HhaI GCGC 4 cut(s) 366, 603, 792, 1199
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 7 cut(s) 41, 76, 292, 652, 790, 1096, 1273
Hin6I GCGC 4 cut(s) 364, 601, 790, 1197
HinP1I GCGC 4 cut(s) 364, 601, 790, 1197
HinfI GANTC 2 cut(s) 49, 855
HpaII CCGG 6 cut(s) 110, 141, 380, 507, 533, 1050
HphI GGTGA 2 cut(s) 412, 860
Hpy166II GTNNAC 2 cut(s) 715, 1176
Hpy188I TCNGA 5 cut(s) 12, 183, 632, 944, 1134
Hpy188III TCNNGA 3 cut(s) 337, 881, 1205
Hpy8I GTNNAC 2 cut(s) 715, 1176
Hpy99I CGWCG 3 cut(s) 397, 503, 1034
HpyAV CCTTC 8 cut(s) 7, 17, 147, 536, 610, 699, 1075, 1117
HpyCH4III ACNGT 4 cut(s) 245, 270, 397, 872
HpyCH4V TGCA 8 cut(s) 37, 210, 302, 683, 715, 966, 1211, 1223
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 600, 721, 1256
HpyF3I CTNAG 2 cut(s) 145, 936
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 7 cut(s) 41, 76, 292, 652, 790, 1096, 1273
HspAI GCGC 4 cut(s) 364, 601, 790, 1197
KflI GGGWCCC 1 cut(s) 106
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
KspI CCGCGG 2 cut(s) 156, 1121
Kzo9I GATC 6 cut(s) 40, 370, 495, 664, 799, 939
LmnI GCTCC 2 cut(s) 16, 128
Lsp1109I GCAGC 5 cut(s) 67, 89, 136, 238, 340
LweI GCATC 2 cut(s) 1198, 1246
MaeI CTAG 4 cut(s) 194, 623, 1307, 1318
MaeIII GTNAC 3 cut(s) 950, 1052, 1282
MalI GATC 6 cut(s) 42, 372, 497, 666, 801, 941
MbiI CCGCTC 3 cut(s) 594, 845, 1155
MboI GATC 6 cut(s) 40, 370, 495, 664, 799, 939
MboII GAAGA 3 cut(s) 245, 625, 1238
MflI RGATCY 2 cut(s) 664, 939
MhlI GDGCHC 4 cut(s) 282, 567, 717, 918
MluCI AATT 4 cut(s) 340, 640, 706, 1218
MluI ACGCGT 1 cut(s) 823
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 8 cut(s) 457, 460, 517, 543, 646, 876, 888, 941
MroNI GCCGGC 1 cut(s) 379
MseI TTAA 5 cut(s) 188, 231, 347, 441, 702
MslI CAYNNNNRTG 3 cut(s) 287, 395, 959
MspA1I CMGCKG 3 cut(s) 80, 155, 1120
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 6 cut(s) 110, 141, 380, 507, 533, 1050
MspR9I CCNGG 3 cut(s) 110, 111, 521
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 3 cut(s) 155, 825, 1120
MwoI GCNNNNNNNGC 4 cut(s) 155, 600, 721, 1256
NaeI GCCGGC 1 cut(s) 381
NciI CCSGG 2 cut(s) 110, 111
NdeII GATC 6 cut(s) 40, 370, 495, 664, 799, 939
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 7 cut(s) 41, 76, 292, 652, 790, 1096, 1273
NlaIV GGNNCC 5 cut(s) 107, 108, 114, 565, 928
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 950, 1282
NspI RCATGY 1 cut(s) 1096
OliI CACNNNNGTG 1 cut(s) 395
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 822
PdiI GCCGGC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 49, 855
PinAI ACCGGT 1 cut(s) 1049
PpuMI RGGWCCY 3 cut(s) 106, 134, 619
PsiI TTATAA 1 cut(s) 678
Psp124BI GAGCTC 1 cut(s) 282
Psp5II RGGWCCY 3 cut(s) 106, 134, 619
Psp6I CCWGG 1 cut(s) 519
PspFI CCCAGC 1 cut(s) 832
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 5 cut(s) 107, 108, 114, 565, 928
PspOMI GGGCCC 1 cut(s) 563
PspPI GGNCC 8 cut(s) 106, 113, 134, 201, 563, 564, 619, 875
PspPPI RGGWCCY 3 cut(s) 106, 134, 619
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 664, 939
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 3 cut(s) 287, 395, 959
SacI GAGCTC 1 cut(s) 282
SacII CCGCGG 2 cut(s) 156, 1121
SaqAI TTAA 5 cut(s) 188, 231, 347, 441, 702
Sau3AI GATC 6 cut(s) 40, 370, 495, 664, 799, 939
Sau96I GGNCC 8 cut(s) 106, 113, 134, 201, 563, 564, 619, 875
ScrFI CCNGG 3 cut(s) 110, 111, 521
SduI GDGCHC 4 cut(s) 282, 567, 717, 918
SfaNI GCATC 2 cut(s) 1198, 1246
SfcI CTRYAG 1 cut(s) 300
Sfr303I CCGCGG 2 cut(s) 156, 1121
SgrBI CCGCGG 2 cut(s) 156, 1121
SinI GGWCC 4 cut(s) 106, 134, 201, 619
SmaI CCCGGG 1 cut(s) 111
SmiMI CAYNNNNRTG 3 cut(s) 287, 395, 959
SmlI CTYRAG 4 cut(s) 164, 230, 773, 887
SmoI CTYRAG 4 cut(s) 164, 230, 773, 887
Sse9I AATT 4 cut(s) 340, 640, 706, 1218
SspMI CTAG 4 cut(s) 194, 623, 1307, 1318
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 3 cut(s) 108, 109, 519
TaaI ACNGT 4 cut(s) 245, 270, 397, 872
TaqI TCGA 7 cut(s) 89, 746, 761, 882, 918, 1029, 1233
TasI AATT 4 cut(s) 340, 640, 706, 1218
TauI GCSGC 6 cut(s) 155, 158, 597, 727, 864, 1120
TfiI GAWTC 2 cut(s) 49, 855
Tru1I TTAA 5 cut(s) 188, 231, 347, 441, 702
Tru9I TTAA 5 cut(s) 188, 231, 347, 441, 702
TscAI CASTG 2 cut(s) 123, 494
TseFI GTSAC 2 cut(s) 950, 1282
TseI GCWGC 5 cut(s) 77, 80, 149, 226, 328
Tsp45I GTSAC 2 cut(s) 950, 1282
TspDTI ATGAA 2 cut(s) 41, 245
TspGWI ACGGA 4 cut(s) 239, 883, 985, 1152
TspMI CCCGGG 1 cut(s) 109
TspRI CASTG 2 cut(s) 123, 494
Vha464I CTTAAG 1 cut(s) 230
VneI GTGCAC 1 cut(s) 713
VpaK11BI GGWCC 4 cut(s) 106, 134, 201, 619
XapI RAATTY 2 cut(s) 640, 706
XceI RCATGY 1 cut(s) 1096
XcmI CCANNNNNNNNNTGG 2 cut(s) 70, 793
XmaI CCCGGG 1 cut(s) 109
XspI CTAG 4 cut(s) 194, 623, 1307, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.