Rmu_sc0006422.1_g000017

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006422.1
OG0000361
Physical Location & Seq
Forward (+)
74556 .. 75185
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006422.1_g000017.1.cds

Sequence Viewer

Length: 630 bp
atgattttccctatcttcttcacattttttttcctcctctcctcatcccatgcttctgtgcaagacttctgtgtcgcagacttgacagctccagaaggccctgcaggctactcctgcaagaagcctgcaaaagttaccgtagatgactttgtgttctctggcctaggcattgctggtaacaccaccaatatcatcaaagctgcagtcacacctgcttttgctgctcaatttcctggtgtcaatggcctcggcatttcgctggctcgtttagacttggctgttgatggagtcatcccatttcacacgcaccccggagcttcggaagtcctgattgttgtggaagggacaatctgtgccgggtttgtttcctcagctaacacagtttatctacaaactcttgagaagggtgacagtatggttttccctcaaggtttgttgcacttccaagtcaatggaggtgatactccagcccttgcctttgttagcttcagtagtcctagccccggtctgcagattctggactttgcattatttaaaaatgacttaccgaccccattgatagctcaaaccacattcctcgacgttgctcagataaagaaacttaagggtgttcttggtggtactaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

21.87

Weight (kDa)

5.14

Isoelectric Point (pI)

24.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 472
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 503
AflII CTTAAG 1 cut(s) 602
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 6 cut(s) 89, 200, 317, 374, 486, 563
AluI AGCT 6 cut(s) 89, 200, 317, 374, 486, 563
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 3 cut(s) 97, 160, 244
ApeKI GCWGC 2 cut(s) 200, 221
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspA2I CCTAGG 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 3 cut(s) 312, 358, 504
AsuHPI GGTGA 2 cut(s) 419, 470
AvrII CCTAGG 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 187, 208
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 3 cut(s) 312, 358, 504
BfaI CTAG 2 cut(s) 164, 498
BfmI CTRYAG 3 cut(s) 102, 201, 509
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 2 cut(s) 201, 222
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 2 cut(s) 202, 223
Bme1390I CCNGG 4 cut(s) 234, 312, 358, 504
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 4 cut(s) 234, 312, 358, 504
BpmI CTGGAG 2 cut(s) 75, 450
Bpu10I CCTNAGC 1 cut(s) 370
BpuEI CTTGAG 2 cut(s) 411, 419
BpuMI CCSGG 3 cut(s) 312, 358, 504
BsaJI CCNNGG 4 cut(s) 163, 247, 310, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 4 cut(s) 163, 247, 310, 502
BseGI GGATG 2 cut(s) 44, 291
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 384, 602
BseRI GAGGAG 2 cut(s) 26, 31
BseXI GCAGC 2 cut(s) 187, 208
BshFI GGCC 3 cut(s) 99, 162, 246
BsiSI CCGG 3 cut(s) 312, 357, 504
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 3 cut(s) 99, 162, 246
BspANI GGCC 3 cut(s) 99, 162, 246
BspCNI CTCAG 2 cut(s) 383, 601
BspMAI CTGCAG 3 cut(s) 106, 205, 513
BspMI ACCTGC 1 cut(s) 220
BspTI CTTAAG 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 168
BssECI CCNNGG 4 cut(s) 163, 247, 310, 502
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 139, 382, 413
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 106, 126, 261
BstDEI CTNAG 2 cut(s) 370, 588
BstF5I GGATG 2 cut(s) 44, 291
BstMWI GCNNNNNNNGC 3 cut(s) 105, 114, 221
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 4 cut(s) 232, 310, 356, 502
BstSFI CTRYAG 3 cut(s) 102, 201, 509
BstV1I GCAGC 2 cut(s) 187, 208
BstXI CCANNNNNNTGG 1 cut(s) 452
BsuRI GGCC 3 cut(s) 99, 162, 246
BtsCI GGATG 2 cut(s) 44, 291
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 106, 126, 261
CaiI CAGNNNCTG 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 621
CviAII CATG 1 cut(s) 50
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 2 cut(s) 370, 588
DraI TTTAAA 1 cut(s) 535
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 51, 416
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 201, 222
FokI GGATG 2 cut(s) 31, 278
Fsp4HI GCNGC 2 cut(s) 201, 222
FspBI CTAG 2 cut(s) 164, 498
GluI GCNGC 2 cut(s) 201, 222
GsuI CTGGAG 2 cut(s) 75, 450
HaeIII GGCC 3 cut(s) 99, 162, 246
HapII CCGG 3 cut(s) 312, 357, 504
Hin1II CATG 1 cut(s) 53
HinfI GANTC 2 cut(s) 288, 514
HpaII CCGG 3 cut(s) 312, 357, 504
HphI GGTGA 2 cut(s) 419, 470
Hpy188I TCNGA 2 cut(s) 322, 591
Hpy188III TCNNGA 4 cut(s) 92, 328, 398, 518
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 3 cut(s) 89, 335, 397
HpyCH4III ACNGT 3 cut(s) 139, 382, 413
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 8 cut(s) 61, 104, 117, 128, 203, 439, 511, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 114, 221
HpyF3I CTNAG 2 cut(s) 370, 588
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 1 cut(s) 53
LmnI GCTCC 2 cut(s) 94, 314
Lsp1109I GCAGC 2 cut(s) 187, 208
MaeI CTAG 2 cut(s) 164, 498
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 4 cut(s) 133, 176, 205, 407
MboII GAAGA 2 cut(s) 7, 10
MluCI AATT 2 cut(s) 227, 625
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 8 cut(s) 44, 47, 52, 257, 379, 435, 449, 587
MseI TTAA 3 cut(s) 534, 603, 628
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 3 cut(s) 312, 357, 504
MspR9I CCNGG 4 cut(s) 234, 312, 358, 504
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 105, 114, 221
NciI CCSGG 3 cut(s) 312, 358, 504
NlaIII CATG 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 2 cut(s) 205, 407
PaqCI CACCTGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 2 cut(s) 202, 223
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 3 cut(s) 106, 205, 513
PstNI CAGNNNCTG 1 cut(s) 517
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SaqAI TTAA 3 cut(s) 534, 603, 628
SatI GCNGC 2 cut(s) 201, 222
Sau96I GGNCC 1 cut(s) 98
SbfI CCTGCAGG 1 cut(s) 106
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 4 cut(s) 234, 312, 358, 504
SdaI CCTGCAGG 1 cut(s) 106
SfcI CTRYAG 3 cut(s) 102, 201, 509
SmlI CTYRAG 3 cut(s) 398, 426, 602
SmoI CTYRAG 3 cut(s) 398, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 2 cut(s) 227, 625
SspMI CTAG 2 cut(s) 164, 498
StyD4I CCNGG 4 cut(s) 232, 310, 356, 502
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 139, 382, 413
TaiI ACGT 1 cut(s) 585
TaqI TCGA 1 cut(s) 579
TasI AATT 2 cut(s) 227, 625
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 3 cut(s) 534, 603, 628
Tru9I TTAA 3 cut(s) 534, 603, 628
TseFI GTSAC 2 cut(s) 205, 407
TseI GCWGC 2 cut(s) 200, 221
Tsp45I GTSAC 2 cut(s) 205, 407
Vha464I CTTAAG 1 cut(s) 602
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 2 cut(s) 164, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.