Rmu_sc0002345.1_g000005

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002345.1
OG0000361
Physical Location & Seq
Forward (+)
18619 .. 19248
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002345.1_g000005.1.cds

Sequence Viewer

Length: 630 bp
atgatttccagtgtcttcttcgtgttttctgtcattctctccagttcctatgctgctatgcaagacttttgtgttgcagactatgcagctcctcaaagccctgcagggtacgcttgcaaagatcccgcaaaggttactgtagatgacttcgtgttctctggcctaagagttgctggtaacatctcaagtatcaacaaaatcgggctatcggctgcatttgctgttaactttcctggtctcaatggcctaggcgttgcactggttcgtgcagactttgctgttggtggagttgtcccgattcactcacaccgtgacgctacagaacttgtaatccttgtggaaggaacagtagttgccggtttcattgcctcgaataataagccttatgtaaagactctgaacaagggtgatactatggtttttcctcaaggtttgtttcacttcctagtgaatgtgggtgatgctccagcacttgcatatgccagcttcagtagtgcaaacccaggtgtgcagactctggaaactgctctgtttcaaaacaatttacctactgaaatcatagccaagtctactttacttgacaccgttcagattcagaaactcaagcgtcttcttgggggtactaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

209

Amino Acids

21.96

Weight (kDa)

6.26

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 569
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 472
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 110, 622
AgsI TTSAA 1 cut(s) 536
AjnI CCWGG 2 cut(s) 232, 502
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 2 cut(s) 89, 486
AluI AGCT 2 cut(s) 89, 486
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 2 cut(s) 160, 244
ApeKI GCWGC 3 cut(s) 53, 86, 212
AspA2I CCTAGG 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 419, 470
AvrII CCTAGG 1 cut(s) 247
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BbsI GAAGAC 2 cut(s) 7, 602
BbvI GCAGC 3 cut(s) 40, 98, 199
BciT130I CCWGG 2 cut(s) 234, 504
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 2 cut(s) 248, 446
BfmI CTRYAG 3 cut(s) 102, 138, 318
BisI GCNGC 3 cut(s) 54, 87, 213
BlnI CCTAGG 1 cut(s) 247
BlsI GCNGC 3 cut(s) 55, 88, 214
Bme1390I CCNGG 2 cut(s) 234, 504
BmrFI CCNGG 2 cut(s) 234, 504
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 2 cut(s) 7, 602
BpmI CTGGAG 2 cut(s) 25, 450
BpuEI CTTGAG 3 cut(s) 169, 411, 587
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 247, 502
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 9, 42, 264
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 234, 504
BseDI CCNNGG 2 cut(s) 247, 502
BseMI GCAATG 1 cut(s) 363
BseNI ACTGG 3 cut(s) 9, 42, 264
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 40, 98, 199
BsgI GTGCAG 2 cut(s) 288, 530
BshFI GGCC 2 cut(s) 162, 246
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 162, 246
Bso31I GGTCTC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 126
BspANI GGCC 2 cut(s) 162, 246
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 9, 42, 264
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 2 cut(s) 247, 502
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 234, 504
Bst4CI ACNGT 4 cut(s) 139, 311, 349, 586
BstAPI GCANNNNNTGC 2 cut(s) 83, 275
BstC8I GCNNGC 2 cut(s) 115, 484
BstDEI CTNAG 1 cut(s) 164
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 4 cut(s) 83, 110, 218, 275
BstNI CCWGG 2 cut(s) 234, 504
BstSCI CCNGG 2 cut(s) 232, 502
BstSFI CTRYAG 3 cut(s) 102, 138, 318
BstV1I GCAGC 3 cut(s) 40, 98, 199
BstV2I GAAGAC 2 cut(s) 7, 602
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 2 cut(s) 162, 246
BtsIMutI CAGTG 2 cut(s) 16, 257
Cac8I GCNNGC 2 cut(s) 115, 484
CaiI CAGNNNCTG 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 356
CseI GACGC 2 cut(s) 323, 596
Csp6I GTAC 2 cut(s) 109, 621
CviJI RGCY 9 cut(s) 89, 99, 162, 205, 212, 246, 382, 486, 563
CviKI_1 RGCY 9 cut(s) 89, 99, 162, 205, 212, 246, 382, 486, 563
CviQI GTAC 2 cut(s) 109, 621
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DraIII CACNNNGTG 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 232, 502
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaiI YATR 8 cut(s) 51, 59, 84, 387, 416, 478, 480, 560
FaqI GGGAC 1 cut(s) 278
FauI CCCGC 1 cut(s) 133
FauNDI CATATG 1 cut(s) 478
FblI GTMKAC 1 cut(s) 569
Fnu4HI GCNGC 3 cut(s) 54, 87, 213
Fsp4HI GCNGC 3 cut(s) 54, 87, 213
FspBI CTAG 2 cut(s) 248, 446
GluI GCNGC 3 cut(s) 54, 87, 213
GsuI CTGGAG 2 cut(s) 25, 450
HaeIII GGCC 2 cut(s) 162, 246
HapII CCGG 1 cut(s) 357
HgaI GACGC 2 cut(s) 323, 596
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 4 cut(s) 298, 394, 514, 592
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 1 cut(s) 357
HphI GGTGA 2 cut(s) 419, 470
Hpy166II GTNNAC 2 cut(s) 226, 570
Hpy188I TCNGA 3 cut(s) 399, 591, 597
Hpy188III TCNNGA 2 cut(s) 295, 518
Hpy8I GTNNAC 2 cut(s) 226, 570
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 4 cut(s) 139, 311, 349, 586
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 110, 218, 275
HpyF3I CTNAG 1 cut(s) 164
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 2 cut(s) 94, 469
Lsp1109I GCAGC 3 cut(s) 40, 98, 199
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 248, 446
MaeIII GTNAC 3 cut(s) 133, 176, 311
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 3 cut(s) 7, 10, 602
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 541
MlyI GAGTC 2 cut(s) 388, 508
MnlI CCTC 3 cut(s) 102, 379, 435
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 234, 504
MvaI CCWGG 2 cut(s) 234, 504
MwoI GCNNNNNNNGC 4 cut(s) 83, 110, 218, 275
NdeI CATATG 1 cut(s) 478
NdeII GATC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 311
PfeI GAWTC 2 cut(s) 298, 592
PkrI GCNGC 3 cut(s) 55, 88, 214
PleI GAGTC 2 cut(s) 388, 508
PpsI GAGTC 2 cut(s) 388, 508
Psp6I CCWGG 2 cut(s) 232, 502
PspGI CCWGG 2 cut(s) 232, 502
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 110, 622
RsaNI GTAC 2 cut(s) 109, 621
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 3 cut(s) 54, 87, 213
Sau3AI GATC 1 cut(s) 121
SbfI CCTGCAGG 1 cut(s) 106
SchI GAGTC 2 cut(s) 388, 508
ScrFI CCNGG 2 cut(s) 234, 504
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 6 cut(s) 91, 135, 433, 488, 508, 550
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 3 cut(s) 102, 138, 318
SmlI CTYRAG 3 cut(s) 184, 426, 602
SmoI CTYRAG 3 cut(s) 184, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 1 cut(s) 541
SsiI CCGC 1 cut(s) 126
SspMI CTAG 2 cut(s) 248, 446
StyD4I CCNGG 2 cut(s) 232, 502
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 4 cut(s) 139, 311, 349, 586
TaqI TCGA 1 cut(s) 371
TasI AATT 1 cut(s) 541
TfiI GAWTC 2 cut(s) 298, 592
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 16, 264
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 3 cut(s) 53, 86, 212
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 352
TspRI CASTG 2 cut(s) 16, 264
XmaJI CCTAGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 569
XspI CTAG 2 cut(s) 248, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.