Rh2DG093500

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000361
Physical Location & Seq
Forward (+)
7335022 .. 7335875
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG093500.1

Sequence Viewer

Length: 639 bp
ATGATGAGGACGTCTTTTCTTATTTTCTTCGTGTTGTCTCTCATTCTCTCTTCCTCCTATGCTGCTGTGCAAGACTTCTGTGTTGCAGACTACACAGCTCCTCAAGGCCCTGCAGGCTACTCTTGCAAAAATCCTGCAAATGTTACGGTGGATGATTTCGTCTACTCTGCCCTAGGAGTTCCTGGTAACACCTCAAATATGATCAAAACCGGAATCACCACCGCATTTTCTTCTCAATTCCCGGGTTTGAATGGCCTTGGCGTTGCATTAGCTCGCGCTGACTTGGCTGTTGGTGGAGTTGTCCCAATGCACACACACCATGGAGCTTCAGAAATTGTACTTATTATTGAAGGAACCATAACCGCCGGGTTCATTTCCTCAGATAACAAAGTTTATCTAAAAACTCTTAAGAAGGGTGACATCATGGTTTTCCCTCAAGGGCTGTTGCACTTCCAAGTGAATGTTGGTGATACTCCAGCTCTTGAGTTTGTTAGCTTCAGCAGTGATAGCCCCGGTCTGCAGATTCTCCATACCGCACTATTTCAAAACAATTTACCTACTGATCTAATCACACGATCCACTTTCCTCGACACTGCTGAGATAAAGAGACTCAAGGCTCTTCTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

212

Amino Acids

22.51

Weight (kDa)

5.89

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 58 - 201 3.8e-37 Cupin
Cupin_2 PF07883 93 - 160 8.8e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 276
AciI CCGC 3 cut(s) 222, 363, 534
AclWI GGATC 1 cut(s) 570
AcuI CTGAAG 2 cut(s) 312, 481
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 339, 631
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 250, 350, 545
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 5 cut(s) 98, 272, 326, 479, 495
AluI AGCT 5 cut(s) 98, 272, 326, 479, 495
Alw26I GTCTC 2 cut(s) 42, 601
AlwI GGATC 1 cut(s) 570
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 2 cut(s) 106, 253
ApeKI GCWGC 1 cut(s) 62
AspA2I CCTAGG 1 cut(s) 172
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 4 cut(s) 242, 243, 367, 513
AsuHPI GGTGA 3 cut(s) 208, 428, 479
AvaI CYCGRG 1 cut(s) 241
AvrII CCTAGG 1 cut(s) 172
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 4 cut(s) 242, 243, 367, 513
BcoDI GTCTC 2 cut(s) 42, 601
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 2 cut(s) 111, 518
BfrI CTTAAG 1 cut(s) 407
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 1 cut(s) 63
BlnI CCTAGG 1 cut(s) 172
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 5 cut(s) 183, 242, 243, 367, 513
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 5 cut(s) 183, 242, 243, 367, 513
BpmI CTGGAG 1 cut(s) 459
BpuEI CTTGAG 4 cut(s) 87, 420, 503, 596
BpuMI CCSGG 4 cut(s) 242, 243, 367, 513
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 5 cut(s) 172, 241, 256, 319, 511
BsaWI WCCGGW 1 cut(s) 209
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 5 cut(s) 172, 241, 256, 319, 511
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 393, 588
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 108, 255
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 4 cut(s) 210, 242, 366, 513
BslFI GGGAC 1 cut(s) 287
BsmAI GTCTC 2 cut(s) 42, 601
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 2 cut(s) 108, 255
BsoBI CYCGRG 1 cut(s) 241
Bsp143I GATC 3 cut(s) 201, 562, 575
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 3 cut(s) 222, 363, 534
BspANI GGCC 2 cut(s) 108, 255
BspCNI CTCAG 2 cut(s) 392, 589
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 355
BspMAI CTGCAG 2 cut(s) 115, 522
BspPI GGATC 1 cut(s) 570
BspQI GCTCTTC 1 cut(s) 624
BspTI CTTAAG 1 cut(s) 407
BssECI CCNNGG 5 cut(s) 172, 241, 256, 319, 511
BssMI GATC 3 cut(s) 201, 562, 575
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 3 cut(s) 172, 256, 319
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 55, 624
BstACI GRCGYC 1 cut(s) 11
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 115, 274
BstDEI CTNAG 2 cut(s) 379, 597
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 3 cut(s) 204, 565, 578
BstMAI GTCTC 2 cut(s) 42, 601
BstMBI GATC 3 cut(s) 201, 562, 575
BstMWI GCNNNNNNNGC 4 cut(s) 114, 123, 284, 507
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 5 cut(s) 181, 240, 241, 365, 511
BstSFI CTRYAG 2 cut(s) 111, 518
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 108, 255
BtgI CCRYGG 1 cut(s) 319
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 2 cut(s) 508, 591
BtsIMutI CAGTG 2 cut(s) 508, 591
Cac8I GCNNGC 2 cut(s) 115, 274
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 107
Cfr9I CCCGGG 1 cut(s) 241
Csp6I GTAC 2 cut(s) 338, 630
CviAII CATG 2 cut(s) 320, 424
CviQI GTAC 2 cut(s) 338, 630
DdeI CTNAG 2 cut(s) 379, 597
DpnI GATC 3 cut(s) 203, 564, 577
DpnII GATC 3 cut(s) 201, 562, 575
Eam1104I CTCTTC 2 cut(s) 55, 624
EarI CTCTTC 2 cut(s) 55, 624
Eco130I CCWWGG 3 cut(s) 172, 256, 319
Eco57I CTGAAG 2 cut(s) 312, 481
Eco88I CYCGRG 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 172, 256, 319
ErhI CCWWGG 3 cut(s) 172, 256, 319
FaeI CATG 2 cut(s) 323, 427
FaiI YATR 6 cut(s) 60, 200, 321, 359, 425, 531
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 319, 423
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 2 cut(s) 108, 255
HapII CCGG 4 cut(s) 210, 242, 366, 513
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 323, 427
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 3 cut(s) 213, 523, 609
HpaII CCGG 4 cut(s) 210, 242, 366, 513
HphI GGTGA 3 cut(s) 208, 428, 479
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 331, 382
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 344, 406
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 9 cut(s) 70, 86, 113, 126, 137, 266, 310, 448, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 123, 284, 507
HpyF3I CTNAG 2 cut(s) 379, 597
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 323, 427
HspAI GCGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 3 cut(s) 201, 562, 575
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 2 cut(s) 103, 323
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 142, 185, 416
MalI GATC 3 cut(s) 203, 564, 577
MboI GATC 3 cut(s) 201, 562, 575
MboII GAAGA 4 cut(s) 19, 42, 222, 611
MluCI AATT 4 cut(s) 236, 333, 550, 634
MlyI GAGTC 1 cut(s) 603
MnlI CCTC 6 cut(s) 64, 111, 202, 388, 444, 596
MseI TTAA 2 cut(s) 408, 637
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 4 cut(s) 210, 242, 366, 513
MspR9I CCNGG 5 cut(s) 183, 242, 243, 367, 513
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 114, 123, 284, 507
NciI CCSGG 4 cut(s) 242, 243, 367, 513
NcoI CCATGG 1 cut(s) 319
NdeII GATC 3 cut(s) 201, 562, 575
NlaIII CATG 2 cut(s) 323, 427
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 213, 523
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 2 cut(s) 115, 522
RsaI GTAC 2 cut(s) 339, 631
RsaNI GTAC 2 cut(s) 338, 630
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 2 cut(s) 408, 637
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 201, 562, 575
Sau96I GGNCC 1 cut(s) 107
SbfI CCTGCAGG 1 cut(s) 115
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 5 cut(s) 183, 242, 243, 367, 513
SdaI CCTGCAGG 1 cut(s) 115
SetI ASST 8 cut(s) 14, 100, 194, 274, 328, 481, 497, 559
SfcI CTRYAG 2 cut(s) 111, 518
SmaI CCCGGG 1 cut(s) 243
SmlI CTYRAG 5 cut(s) 102, 407, 435, 482, 611
SmoI CTYRAG 5 cut(s) 102, 407, 435, 482, 611
Sse8387I CCTGCAGG 1 cut(s) 115
Sse9I AATT 4 cut(s) 236, 333, 550, 634
SsiI CCGC 3 cut(s) 222, 363, 534
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 5 cut(s) 181, 240, 241, 365, 511
StyI CCWWGG 3 cut(s) 172, 256, 319
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 588
TasI AATT 4 cut(s) 236, 333, 550, 634
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 213, 523
Tru1I TTAA 2 cut(s) 408, 637
Tru9I TTAA 2 cut(s) 408, 637
TscAI CASTG 2 cut(s) 508, 598
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 361
TspMI CCCGGG 1 cut(s) 241
TspRI CASTG 2 cut(s) 508, 598
Vha464I CTTAAG 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmaI CCCGGG 1 cut(s) 241
XmaJI CCTAGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.