Rw2G007340

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000361
Physical Location & Seq
Reverse (-)
7203352 .. 7203983
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007340.1

Sequence Viewer

Length: 492 bp
ATGACCGTTTTCGTCGTCTCCTTCATTTTTTGTTTCGTTCTCTCATTTTCCTATGCTGCTGTGCAGGGCTTCTGTGTTGCGGACTACGCAGCTCCTCAAAGCCCTGTAGGCTACTCTTTCAAGAACCCCGCAAATGTTACGGTAGATGATTTCGTATACACTGGCCTTGAAGTTGATGGCAATACCTCAAATATTATTAAATTTCCTGGTCTGAATGGACTTGGCCTTTCACTGGCTCGGGCTGACTTGGCTGTTGGTGGAGTCAAGGGTGACATTATGGTTTTGCCTCCAGGGTTGTTTCACTTCCAATTGAATGGAGGTGATACTCCAGTACTTGAATTTGCTGCCTTCAGTAGTGCAAACCCTGGTGTGCAGATTCTGGAGAATTCACTGTTTCAAAACGATTTACCTACAGAATTGATAGGACATACTACATTCCTCGAAGCTGCTCAGATTAAGAAACTTAAGGGTTTTCTTGGTGGTACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

163

Amino Acids

17.26

Weight (kDa)

4.57

Isoelectric Point (pI)

19.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 89 - 152 1e-11 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AciI CCGC 2 cut(s) 80, 129
AcsI RAATTY 3 cut(s) 200, 338, 385
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 2 cut(s) 333, 484
AfiI CCNNNNNNNGG 1 cut(s) 232
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 5 cut(s) 121, 170, 313, 338, 398
AjnI CCWGG 3 cut(s) 205, 289, 364
AluBI AGCT 2 cut(s) 92, 446
AluI AGCT 2 cut(s) 92, 446
Alw26I GTCTC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 2 cut(s) 163, 223
ApeKI GCWGC 4 cut(s) 56, 89, 344, 446
ApoI RAATTY 3 cut(s) 200, 338, 385
AsuHPI GGTGA 2 cut(s) 281, 332
AvaI CYCGRG 1 cut(s) 237
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BbvI GCAGC 4 cut(s) 43, 101, 331, 433
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 3 cut(s) 207, 291, 366
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 2 cut(s) 105, 411
BfrI CTTAAG 1 cut(s) 464
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 4 cut(s) 57, 90, 345, 447
BlsI GCNGC 4 cut(s) 58, 91, 346, 448
BmcAI AGTACT 1 cut(s) 333
Bme1390I CCNGG 3 cut(s) 207, 291, 366
BmeT110I CYCGRG 1 cut(s) 237
BmrFI CCNGG 3 cut(s) 207, 291, 366
BpmI CTGGAG 3 cut(s) 273, 312, 401
BsaJI CCNNGG 2 cut(s) 290, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 3 cut(s) 166, 237, 329
BseBI CCWGG 3 cut(s) 207, 291, 366
BseDI CCNNGG 2 cut(s) 290, 364
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 3 cut(s) 166, 237, 329
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 4 cut(s) 43, 101, 331, 433
BsgI GTGCAG 2 cut(s) 83, 392
BshFI GGCC 2 cut(s) 165, 225
BsiHKCI CYCGRG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 165, 225
BsoBI CYCGRG 1 cut(s) 237
BspACI CCGC 2 cut(s) 80, 129
BspANI GGCC 2 cut(s) 165, 225
BspCNI CTCAG 1 cut(s) 463
BspTI CTTAAG 1 cut(s) 464
BsrI ACTGG 3 cut(s) 166, 237, 329
BssECI CCNNGG 2 cut(s) 290, 364
BssNAI GTATAC 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 3 cut(s) 207, 291, 366
Bst4CI ACNGT 3 cut(s) 7, 142, 393
BstAFI CTTAAG 1 cut(s) 464
BstDEI CTNAG 1 cut(s) 450
BstMAI GTCTC 1 cut(s) 22
BstMWI GCNNNNNNNGC 3 cut(s) 86, 108, 248
BstNI CCWGG 3 cut(s) 207, 291, 366
BstSCI CCNGG 3 cut(s) 205, 289, 364
BstSFI CTRYAG 2 cut(s) 105, 411
BstV1I GCAGC 4 cut(s) 43, 101, 331, 433
BstXI CCANNNNNNTGG 1 cut(s) 314
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 2 cut(s) 165, 225
BtsIMutI CAGTG 3 cut(s) 159, 230, 389
CaiI CAGNNNCTG 1 cut(s) 379
Csp6I GTAC 2 cut(s) 332, 483
CviQI GTAC 2 cut(s) 332, 483
DdeI CTNAG 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 205, 289, 364
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 4 cut(s) 54, 157, 278, 429
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 57, 90, 345, 447
Fsp4HI GCNGC 4 cut(s) 57, 90, 345, 447
GluI GCNGC 4 cut(s) 57, 90, 345, 447
GsuI CTGGAG 3 cut(s) 273, 312, 401
HaeIII GGCC 2 cut(s) 165, 225
HinfI GANTC 2 cut(s) 261, 376
HphI GGTGA 2 cut(s) 281, 332
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 213, 453
Hpy188III TCNNGA 2 cut(s) 121, 380
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 31, 358
HpyCH4III ACNGT 3 cut(s) 7, 142, 393
HpyCH4V TGCA 3 cut(s) 64, 359, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 108, 248
HpyF3I CTNAG 1 cut(s) 450
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 4 cut(s) 43, 101, 331, 433
MaeIII GTNAC 2 cut(s) 136, 269
MfeI CAATTG 1 cut(s) 308
MluCI AATT 6 cut(s) 200, 308, 338, 385, 416, 487
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 5 cut(s) 105, 196, 297, 311, 449
MseI TTAA 3 cut(s) 198, 456, 465
MspCI CTTAAG 1 cut(s) 464
MspR9I CCNGG 3 cut(s) 207, 291, 366
MunI CAATTG 1 cut(s) 308
MvaI CCWGG 3 cut(s) 207, 291, 366
MwoI GCNNNNNNNGC 3 cut(s) 86, 108, 248
NmuCI GTSAC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 4 cut(s) 58, 91, 346, 448
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 3 cut(s) 205, 289, 364
PspGI CCWGG 3 cut(s) 205, 289, 364
PstNI CAGNNNCTG 1 cut(s) 379
RsaI GTAC 2 cut(s) 333, 484
RsaNI GTAC 2 cut(s) 332, 483
SaqAI TTAA 3 cut(s) 198, 456, 465
SatI GCNGC 4 cut(s) 57, 90, 345, 447
ScaI AGTACT 1 cut(s) 333
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 3 cut(s) 207, 291, 366
SetI ASST 5 cut(s) 94, 188, 322, 412, 448
SfcI CTRYAG 2 cut(s) 105, 411
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 6 cut(s) 200, 308, 338, 385, 416, 487
SsiI CCGC 2 cut(s) 80, 129
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 205, 289, 364
TaaI ACNGT 3 cut(s) 7, 142, 393
TaqI TCGA 1 cut(s) 441
TasI AATT 6 cut(s) 200, 308, 338, 385, 416, 487
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 198, 456, 465
Tru9I TTAA 3 cut(s) 198, 456, 465
TscAI CASTG 3 cut(s) 166, 237, 396
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 4 cut(s) 56, 89, 344, 446
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 3 cut(s) 166, 237, 396
Vha464I CTTAAG 1 cut(s) 464
XapI RAATTY 3 cut(s) 200, 338, 385
XmiI GTMKAC 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.