FvH4_2g06460

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000361
Physical Location & Seq
Reverse (-)
5382697 .. 5383516
820 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06460.t1

Sequence Viewer

Length: 639 bp
ATGGAGATTATCTATGTCTTCTGCATGTTTTCTCTCCTTGTCTCCTTCTCTTATGCTGCTGTGCAAGACTTTTGTGTTGCTGACTACACAGCTCCTTCTGGACCTGCAGGCTACTCTTGCAAAAAGGATGAAATGGTTACAGCGGATGATTTCGTATACTCCGGCCTAAATACTACCGGTAACACCGTAAACATATTCAAAGCTGCAAACACCCCTGCGTCCGCTGACCAGTTTCCTGGTGTGAATGGCCTTGGCATTTCAATGGCTCGTGTCGACGTGGCTGCCGGTGGGGTTATCCCTTTGCATATACACCCCGGAGCGAATGAAGTCCTATTTGTTGCGGAAGGAACATTAGATGCCGGGTTCATATCCTCAGATCGGAACACGGTATATGTCAAAACTATTAAGAAAGGTGATATTATAGTTTTCCCTCGAGGGTTATTGCACTTCCAAGTGAATGTTGGAAATGGTACCCCAGTTGTTGCATTTGCTAGCTACAGCAGTGCAAGGCCAGGTCTACAGATTGTGGACTTTGCACTATTTAAAAGCAACCTTTCTACTGAATTGATAAAGCGCTCTACTTTTCTTGACTTTTTGCAGATAAAGAAACTGAAGATTGTCTTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

213

Amino Acids

22.68

Weight (kDa)

6.27

Isoelectric Point (pI)

18.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 55 - 197 1.7e-35 Cupin
Cupin_2 PF07883 90 - 163 4.2e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 112
Acc65I GGTACC 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 470
AccI GTMKAC 3 cut(s) 156, 273, 517
AciI CCGC 3 cut(s) 143, 222, 341
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 2 cut(s) 472, 631
AfeI AGCGCT 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 378
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 199, 261
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 2 cut(s) 235, 511
AluBI AGCT 3 cut(s) 92, 203, 495
AluI AGCT 3 cut(s) 92, 203, 495
Alw26I GTCTC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 432
Aor51HI AGCGCT 1 cut(s) 575
AoxI GGCC 3 cut(s) 163, 247, 509
ApeKI GCWGC 3 cut(s) 56, 203, 281
AsiGI ACCGGT 1 cut(s) 176
Asp718I GGTACC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 2 cut(s) 315, 361
AsuHPI GGTGA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 1 cut(s) 101
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BanI GGYRCC 1 cut(s) 470
BauI CACGAG 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 3 cut(s) 43, 190, 268
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 2 cut(s) 237, 513
BcnI CCSGG 2 cut(s) 315, 361
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 3 cut(s) 105, 496, 518
BfoI RGCGCY 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 3 cut(s) 57, 204, 282
BlsI GCNGC 3 cut(s) 58, 205, 283
Bme1390I CCNGG 4 cut(s) 237, 315, 361, 513
Bme18I GGWCC 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 432
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 472
BmrFI CCNGG 4 cut(s) 237, 315, 361, 513
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 346
BmtI GCTAGC 1 cut(s) 495
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 10
BpuMI CCSGG 2 cut(s) 315, 361
BsaJI CCNNGG 2 cut(s) 250, 313
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse118I RCCGGY 2 cut(s) 176, 284
Bse1I ACTGG 2 cut(s) 229, 476
BseBI CCWGG 2 cut(s) 237, 513
BseDI CCNNGG 2 cut(s) 250, 313
BseGI GGATG 2 cut(s) 133, 151
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 229, 476
BseXI GCAGC 3 cut(s) 43, 190, 268
BshFI GGCC 3 cut(s) 165, 249, 511
BshNI GGYRCC 1 cut(s) 470
BshTI ACCGGT 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 5 cut(s) 162, 177, 285, 315, 360
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 3 cut(s) 165, 249, 511
BsoBI CYCGRG 1 cut(s) 432
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 3 cut(s) 143, 222, 341
BspANI GGCC 3 cut(s) 165, 249, 511
BspCNI CTCAG 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 472
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 470
BsrFI RCCGGY 2 cut(s) 176, 284
BsrI ACTGG 2 cut(s) 229, 476
BssAI RCCGGY 2 cut(s) 176, 284
BssECI CCNNGG 2 cut(s) 250, 313
BssMI GATC 1 cut(s) 376
BssNAI GTATAC 1 cut(s) 157
BssSI CACGAG 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 237, 513
Bst4CI ACNGT 2 cut(s) 187, 388
BstC8I GCNNGC 2 cut(s) 109, 493
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 133, 151
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 2 cut(s) 237, 513
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 4 cut(s) 235, 313, 359, 511
BstSFI CTRYAG 3 cut(s) 105, 496, 518
BstV1I GCAGC 3 cut(s) 43, 190, 268
BstV2I GAAGAC 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 236
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 3 cut(s) 165, 249, 511
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 133, 151
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 1 cut(s) 508
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 109, 493
CfoI GCGC 1 cut(s) 576
Cfr10I RCCGGY 2 cut(s) 176, 284
Cfr13I GGNCC 1 cut(s) 101
CseI GACGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 471, 630
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 1 cut(s) 25
CviJI RGCY 9 cut(s) 92, 111, 165, 203, 249, 266, 281, 495, 511
CviKI_1 RGCY 9 cut(s) 92, 111, 165, 203, 249, 266, 281, 495, 511
CviQI GTAC 2 cut(s) 471, 630
DdeI CTNAG 1 cut(s) 373
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DraI TTTAAA 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 101
Eco47III AGCGCT 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 632
Eco88I CYCGRG 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 235, 511
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 28
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FatI CATG 1 cut(s) 24
FblI GTMKAC 3 cut(s) 156, 273, 517
Fnu4HI GCNGC 3 cut(s) 57, 204, 282
FokI GGATG 2 cut(s) 140, 158
Fsp4HI GCNGC 3 cut(s) 57, 204, 282
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 575
GluI GCNGC 3 cut(s) 57, 204, 282
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 3 cut(s) 165, 249, 511
HapII CCGG 5 cut(s) 162, 177, 285, 315, 360
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 576
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HpaII CCGG 5 cut(s) 162, 177, 285, 315, 360
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 5 cut(s) 157, 190, 274, 518, 529
Hpy188I TCNGA 2 cut(s) 376, 381
Hpy188III TCNNGA 2 cut(s) 99, 587
Hpy8I GTNNAC 5 cut(s) 157, 190, 274, 518, 529
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 55, 105, 338
HpyCH4III ACNGT 2 cut(s) 187, 388
HpyCH4IV ACGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 373
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 1 cut(s) 574
KpnI GGTACC 1 cut(s) 474
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 2 cut(s) 97, 317
Lsp1109I GCAGC 3 cut(s) 43, 190, 268
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 136, 179
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 2 cut(s) 10, 625
MluCI AATT 2 cut(s) 563, 634
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 3 cut(s) 382, 428, 441
MseI TTAA 3 cut(s) 405, 543, 637
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 2 cut(s) 143, 224
MspI CCGG 5 cut(s) 162, 177, 285, 315, 360
MspR9I CCNGG 4 cut(s) 237, 315, 361, 513
MvaI CCWGG 2 cut(s) 237, 513
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 2 cut(s) 315, 361
NdeII GATC 1 cut(s) 376
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 472
NspI RCATGY 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 432
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 3 cut(s) 58, 205, 283
Psp6I CCWGG 2 cut(s) 235, 511
PspGI CCWGG 2 cut(s) 235, 511
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 432
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 2 cut(s) 472, 631
RsaNI GTAC 2 cut(s) 471, 630
RseI CAYNNNNRTG 1 cut(s) 260
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 405, 543, 637
SatI GCNGC 3 cut(s) 57, 204, 282
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 1 cut(s) 101
SbfI CCTGCAGG 1 cut(s) 109
ScrFI CCNGG 4 cut(s) 237, 315, 361, 513
SdaI CCTGCAGG 1 cut(s) 109
SetI ASST 8 cut(s) 94, 106, 205, 279, 415, 497, 517, 555
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 3 cut(s) 105, 496, 518
Sfr274I CTCGAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse8387I CCTGCAGG 1 cut(s) 109
Sse9I AATT 2 cut(s) 563, 634
SsiI CCGC 3 cut(s) 143, 222, 341
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 4 cut(s) 235, 313, 359, 511
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 187, 388
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 273, 433
TasI AATT 2 cut(s) 563, 634
Tru1I TTAA 3 cut(s) 405, 543, 637
Tru9I TTAA 3 cut(s) 405, 543, 637
TscAI CASTG 1 cut(s) 508
TseI GCWGC 3 cut(s) 56, 203, 281
TspDTI ATGAA 3 cut(s) 144, 339, 355
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 101
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XhoI CTCGAG 1 cut(s) 432
XmiI GTMKAC 3 cut(s) 156, 273, 517
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.