Prupe.7G200200_v2.0.a1

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000361
Physical Location & Seq
Reverse (-)
18717870 .. 18720441
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G200200.1

Sequence Viewer

Length: 639 bp
ATGATTTTCCCTATCTTCTTCACATTTTTTCTCCTCCTCTCCACTTCCCATGCCTCTGTGCAAGACTTCTGTGTTGCAGACTACAAAGCTCCTGATGGCCCTGCAGGCTACTCTTGCAAAAAGCCCGCAATAGTTACCGTCAATGATTTTGTGTACTCAGGCCTAGGCATTGCTGGTAACACCACAAATATCTTCAAAGCAGCAGTCACCCCTGCATTTGCTGCCCAATTTCCTGGTGTGAATGGCCTTGGCATTTCACTGGCTCGTTTAGACCTGGGTCCGGGTGGAGTTGTCCCCTTTCACACTCACCCCGGAGCTTCAGAAGTTTTACTTGTTGTCCAAGGGACAATAATTGCCGGGTTTGTTGCCTCAGATAACACACCTTATCTGAAAACTCTTAAGAAGGGTGACATTATCGTGTTCCCTCAAGGACTATTGCACTTCCAAGTGAATGGAGGTGACACTCCGGCCATTGCATTTCCTAGCTTCAGCAGTCCAAGCCCTGGTCTGCAGATTGTGGACTTTGCACTCTTCAAAAATGACTTAGCTACCGAATTGATAGCGCAGACTACTTTACTTGATGCTCCTCAGATAAAGAAGCTTAAGGGTGTTCTTGGTGGCACTAATAAGGTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

213

Amino Acids

22.25

Weight (kDa)

6.89

Isoelectric Point (pI)

21.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 503
AciI CCGC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 468
AcuI CTGAAG 2 cut(s) 303, 472
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 280, 503
AflII CTTAAG 2 cut(s) 398, 602
AgsI TTSAA 2 cut(s) 196, 535
AjnI CCWGG 3 cut(s) 232, 273, 502
AluBI AGCT 5 cut(s) 89, 317, 486, 548, 601
AluI AGCT 5 cut(s) 89, 317, 486, 548, 601
AoxI GGCC 4 cut(s) 97, 160, 244, 468
ApeKI GCWGC 2 cut(s) 200, 221
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 2 cut(s) 98, 278
AsuC2I CCSGG 3 cut(s) 282, 312, 358
AsuHPI GGTGA 4 cut(s) 199, 299, 419, 470
AvaII GGWCC 1 cut(s) 278
AvrII CCTAGG 1 cut(s) 163
BbvI GCAGC 2 cut(s) 208, 212
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 3 cut(s) 234, 275, 504
BcnI CCSGG 3 cut(s) 282, 312, 358
BfaI CTAG 2 cut(s) 164, 483
BfmI CTRYAG 2 cut(s) 102, 509
BfrI CTTAAG 2 cut(s) 398, 602
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 2 cut(s) 201, 222
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 2 cut(s) 202, 223
Bme1390I CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 98, 278
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
BmsI GCATC 1 cut(s) 571
BoxI GACNNNNGTC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 3 cut(s) 282, 312, 358
BsaJI CCNNGG 6 cut(s) 163, 247, 274, 310, 340, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 503
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 168, 471
BseBI CCWGG 3 cut(s) 234, 275, 504
BseDI CCNNGG 6 cut(s) 163, 247, 274, 310, 340, 502
BseLI CCNNNNNNNGG 2 cut(s) 280, 503
BseMI GCAATG 2 cut(s) 168, 471
BseMII CTCAG 3 cut(s) 171, 384, 602
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 3 cut(s) 23, 26, 576
BseXI GCAGC 2 cut(s) 208, 212
BshFI GGCC 4 cut(s) 99, 162, 246, 470
BsiSI CCGG 4 cut(s) 281, 312, 357, 467
BslFI GGGAC 2 cut(s) 278, 358
BslI CCNNNNNNNGG 2 cut(s) 280, 503
BsmFI GGGAC 2 cut(s) 278, 358
BsnI GGCC 4 cut(s) 99, 162, 246, 470
BspACI CCGC 1 cut(s) 126
BspANI GGCC 4 cut(s) 99, 162, 246, 470
BspCNI CTCAG 3 cut(s) 170, 383, 601
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 2 cut(s) 106, 513
BspTI CTTAAG 2 cut(s) 398, 602
BsrDI GCAATG 2 cut(s) 168, 471
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 6 cut(s) 163, 247, 274, 310, 340, 502
BssT1I CCWWGG 3 cut(s) 163, 247, 340
Bst2UI CCWGG 3 cut(s) 234, 275, 504
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 536
BstAFI CTTAAG 2 cut(s) 398, 602
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 106, 126
BstDEI CTNAG 4 cut(s) 157, 370, 544, 588
BstHHI GCGC 1 cut(s) 565
BstMWI GCNNNNNNNGC 4 cut(s) 105, 114, 221, 498
BstNI CCWGG 3 cut(s) 234, 275, 504
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 6 cut(s) 232, 273, 280, 310, 356, 502
BstSFI CTRYAG 2 cut(s) 102, 509
BstV1I GCAGC 2 cut(s) 208, 212
BstXI CCANNNNNNTGG 2 cut(s) 233, 452
BsuRI GGCC 4 cut(s) 99, 162, 246, 470
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 106, 126
CfoI GCGC 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 98, 278
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 50
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 4 cut(s) 157, 370, 544, 588
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 3 cut(s) 163, 247, 340
Eco147I AGGCCT 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 303, 472
EcoRII CCWGG 3 cut(s) 232, 273, 502
EcoT14I CCWWGG 3 cut(s) 163, 247, 340
ErhI CCWWGG 3 cut(s) 163, 247, 340
FaeI CATG 1 cut(s) 53
FaiI YATR 1 cut(s) 51
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 2 cut(s) 278, 358
FatI CATG 1 cut(s) 49
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 201, 222
Fsp4HI GCNGC 2 cut(s) 201, 222
FspBI CTAG 2 cut(s) 164, 483
GlaI GCGC 1 cut(s) 564
GluI GCNGC 2 cut(s) 201, 222
HaeIII GGCC 4 cut(s) 99, 162, 246, 470
HapII CCGG 4 cut(s) 281, 312, 357, 467
HhaI GCGC 1 cut(s) 565
Hin1II CATG 1 cut(s) 53
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HindIII AAGCTT 1 cut(s) 599
HpaII CCGG 4 cut(s) 281, 312, 357, 467
HphI GGTGA 4 cut(s) 199, 299, 419, 470
Hpy166II GTNNAC 2 cut(s) 154, 520
Hpy188I TCNGA 4 cut(s) 322, 373, 390, 591
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 154, 520
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 9 cut(s) 61, 77, 104, 117, 215, 439, 476, 511, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 114, 221, 498
HpyF3I CTNAG 4 cut(s) 157, 370, 544, 588
Hsp92II CATG 1 cut(s) 53
HspAI GCGC 1 cut(s) 563
LmnI GCTCC 3 cut(s) 94, 314, 589
Lsp1109I GCAGC 2 cut(s) 208, 212
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 164, 483
MaeIII GTNAC 5 cut(s) 133, 176, 205, 407, 458
MboII GAAGA 4 cut(s) 7, 10, 184, 523
MluCI AATT 3 cut(s) 227, 351, 554
MnlI CCTC 7 cut(s) 44, 47, 64, 379, 435, 449, 597
MseI TTAA 2 cut(s) 399, 603
MslI CAYNNNNRTG 1 cut(s) 416
MspCI CTTAAG 2 cut(s) 398, 602
MspI CCGG 4 cut(s) 281, 312, 357, 467
MspR9I CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
MvaI CCWGG 3 cut(s) 234, 275, 504
MwoI GCNNNNNNNGC 4 cut(s) 105, 114, 221, 498
NciI CCSGG 3 cut(s) 282, 312, 358
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 3 cut(s) 205, 407, 458
PceI AGGCCT 1 cut(s) 162
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 2 cut(s) 202, 223
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 3 cut(s) 232, 273, 502
PspGI CCWGG 3 cut(s) 232, 273, 502
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 98, 278
PstI CTGCAG 2 cut(s) 106, 513
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 2 cut(s) 399, 603
SatI GCNGC 2 cut(s) 201, 222
Sau96I GGNCC 2 cut(s) 98, 278
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 9 cut(s) 91, 276, 319, 385, 460, 488, 550, 603, 633
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 2 cut(s) 102, 509
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 398, 426, 602
SmoI CTYRAG 3 cut(s) 398, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 3 cut(s) 227, 351, 554
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 1 cut(s) 126
SspMI CTAG 2 cut(s) 164, 483
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 6 cut(s) 232, 273, 280, 310, 356, 502
StyI CCWWGG 3 cut(s) 163, 247, 340
TaaI ACNGT 1 cut(s) 139
TasI AATT 3 cut(s) 227, 351, 554
TatI WGTACW 1 cut(s) 153
Tru1I TTAA 2 cut(s) 399, 603
Tru9I TTAA 2 cut(s) 399, 603
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 3 cut(s) 205, 407, 458
TseI GCWGC 2 cut(s) 200, 221
Tsp45I GTSAC 3 cut(s) 205, 407, 458
TspRI CASTG 1 cut(s) 264
Van91I CCANNNNNTGG 1 cut(s) 503
Vha464I CTTAAG 2 cut(s) 398, 602
VpaK11BI GGWCC 1 cut(s) 278
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 2 cut(s) 164, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.