Rorug07G0200300

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000361
Physical Location & Seq
Forward (+)
17377475 .. 17378407
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0200300.1

Sequence Viewer

Length: 933 bp
ATGACGTCCAAGACTCGGCAGGGATCTGTTGCTGCTACAACCAAAGAGGATGCCGAGCAGTTTCTTTGCTCCATGTTTGGAGACGAGTCGGAGATAAGCTTGGGTGTGGTTAAAGATGTCCTTGGTCAGTGTGGGTATGAGGTTGAAAAGGCGTTGGATGCCTTGCTCGAGTTATCTTCTTCCTCAAGAAAGAGACGGTGCTCTTCAGAATATATCCGCAAGAACTATGCCGAGGTTCTTGTTGGTCCTTCTGAAGCACATAGGAGTACGAGTGCAAATCTGTCTCAGATGGTGTTGGAATCTTTGTTTAACAACTCCAAGAGAAGTCTTCAGAATGAAGAACCAAGAACTATGAATTCTTGGAAGAACAGTGTCAAGGAATTGCAAGATTCTTTGGGACCCGAGTTTGATGTTGCTAAAGGAGCTAAATATGATGCAAACAGAAGTACTGCAAAGGAGCATTGGAATTCAGTGAAGTCCTACCATCAAAAAGCTGCGACTGCGTATTCAAACGGATCACGGGCATATGCAGGTTACCTATCCGAGCAGGCCAAGGCAAAGGCGAAATTGGCACCAGAGGTGGACGAGAAGGCAAGCCAGGAGATCTTTAAAGCTAAAAACAAGGACAAGGGAATAAAAAATGATGTGATGACAATTGATTTGCATGGGCAGCATGTGAACGAAGCGATGAAGTTTTTGAAGATGCACATTCAGTATGGAACCAATACACAATCGCTTCGATTTCTCAGGGTTATTACAGGACATGGTGCAGGGAAGTCTATTGTGAAACAATCTGTCATCAAATTTTTCCAGAAAGAAGGTATTAAATGGAGTGAAGAGAATCCAGGAGCGTTGTTAATCAAGCTAGGTTCACAGAGAGACTACTTCAGATTTATGGACAGGGATGTACGTAGTGTCTGTTCTGTCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

310

Amino Acids

34.63

Weight (kDa)

9.19

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1771 PF08590 144 - 207 6.4e-14 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20630
fragaria_vesca FvH4_1g08531 FvH4_1g08540 FvH4_1g08541 FvH4_1g18170 FvH4_1g18630 FvH4_2g06460 FvH4_6g36650
malus_domestica MD02G1089800.v1.1 MD15G1216400.v1.1 MD15G1216500.v1.1
prunus_persica Prupe.7G200100_v2.0.a1 Prupe.7G200200_v2.0.a1 Prupe.7G200300_v2.0.a1
pyrus_communis pycom02g07170 pycom15g19190
rosa_chinensis RchiOBHm_Chr2g0094741 RchiOBHm_Chr2g0094751 RchiOBHm_Chr2g0094761 RchiOBHm_Chr2g0094781 RchiOBHm_Chr2g0094791 RchiOBHm_Chr2g0095301 RchiOBHm_Chr2g0108661 RchiOBHm_Chr2g0109441 RchiOBHm_Chr2g0149111
rosa_laevigata RLG00000002180 RLG00000003674 RLG00000016514 RLG00000016515 RLG00000016516 RLG00000016517 RLG00000016521 RLG00000017684 RLG00000017738 RLG00000020370
rosa_multiflora Rmu_co8274667.1_g000001 Rmu_co8326765.1_g000001 Rmu_co8421367.1_g000001 Rmu_sc0000332.1_g000020 Rmu_sc0001588.1_g000008 Rmu_sc0002105.1_g000003 Rmu_sc0002345.1_g000005 Rmu_sc0004359.1_g000003 Rmu_sc0004359.1_g000007 Rmu_sc0004359.1_g000008 Rmu_sc0004359.1_g000010 Rmu_sc0004359.1_g000012 Rmu_sc0004359.1_g000015 Rmu_sc0006422.1_g000015 Rmu_sc0006422.1_g000017 Rmu_sc0006422.1_g000019 Rmu_sc0006422.1_g000021 Rmu_sc0006422.1_g000022 Rmu_sc0012763.1_g000007 Rmu_sc0022670.1_g000002 Rmu_sc0025419.1_g000001
rosa_roxburghii Rroxscaffold_2G00098450 Rroxscaffold_2G00134240 Rroxscaffold_2G00146910 Rroxscaffold_2G00146920 Rroxscaffold_2G00146930 Rroxscaffold_2G00146940 Rroxscaffold_3G00238780
rosa_rugosa Rorug02G0046400.1 Rorug02G0046500.1 Rorug02G0046600.1 Rorug02G0046700.1 Rorug02G0046900 Rorug02G0049100 Rorug02G0155100 Rorug02G0159900 Rorug02G0160200 Rorug02G0409200 Rorug07G0200300
rosa_samantha Rh2AG093700 Rh2AG093800 Rh2AG093900 Rh2AG094000 Rh2AG094100 Rh2AG094400 Rh2AG097200 Rh2AG204600 Rh2AG212100 Rh2AG469000 Rh2BG094200 Rh2BG094400 Rh2BG094700 Rh2BG095000 Rh2BG222500 Rh2BG481500 Rh2DG093300 Rh2DG093400 Rh2DG093500 Rh2DG093700 Rh2DG093800 Rh2DG098300 Rh2DG217700 Rh2DG490400 Rh7AG339600 Rh7CG357600 Rh7DG338300
rosa_wichuraiana Rw2G007340 Rw2G016310 Rw2G038180 Rw7G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 571
AciI CCGC 1 cut(s) 217
AclWI GGATC 2 cut(s) 31, 523
AcsI RAATTY 3 cut(s) 355, 466, 803
AcuI CTGAAG 4 cut(s) 189, 273, 314, 871
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 268, 448, 909
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 3 cut(s) 146, 510, 700
AjnI CCWGG 2 cut(s) 597, 844
AluBI AGCT 5 cut(s) 99, 425, 494, 614, 865
AluI AGCT 5 cut(s) 99, 425, 494, 614, 865
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 4 cut(s) 75, 187, 288, 873
AlwI GGATC 2 cut(s) 31, 523
Ama87I CYCGRG 2 cut(s) 167, 401
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 3 cut(s) 32, 494, 670
ApoI RAATTY 3 cut(s) 355, 466, 803
ArsI GACNNNNNNTTYG 2 cut(s) 643, 675
AspS9I GGNCC 2 cut(s) 245, 398
AvaI CYCGRG 2 cut(s) 167, 401
AvaII GGWCC 2 cut(s) 245, 398
BanI GGYRCC 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 19, 481, 682
BccI CCATC 2 cut(s) 283, 492
BciT130I CCWGG 2 cut(s) 599, 846
BcoDI GTCTC 4 cut(s) 75, 187, 288, 873
BfaI CTAG 1 cut(s) 866
BfuAI ACCTGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 603
BisI GCNGC 3 cut(s) 33, 495, 671
BlsI GCNGC 3 cut(s) 34, 496, 672
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 599, 846
Bme18I GGWCC 2 cut(s) 245, 398
BmeT110I CYCGRG 2 cut(s) 167, 401
BmgT120I GGNCC 2 cut(s) 245, 398
BmiI GGNNCC 4 cut(s) 399, 400, 573, 721
BmrFI CCNGG 2 cut(s) 599, 846
BmsI GCATC 4 cut(s) 40, 148, 424, 693
BpiI GAAGAC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 911
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 121, 231, 552
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 15
BseBI CCWGG 2 cut(s) 599, 846
BseDI CCNNGG 3 cut(s) 121, 231, 552
BseGI GGATG 3 cut(s) 55, 163, 910
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 299, 760
BseXI GCAGC 3 cut(s) 19, 481, 682
BsgI GTGCAG 1 cut(s) 789
BshFI GGCC 1 cut(s) 551
BshNI GGYRCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 2 cut(s) 167, 401
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 4 cut(s) 75, 187, 288, 873
BsmBI CGTCTC 2 cut(s) 75, 187
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 1 cut(s) 551
BsoBI CYCGRG 2 cut(s) 167, 401
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 23, 515, 603
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 2 cut(s) 298, 759
BspLI GGNNCC 4 cut(s) 399, 400, 573, 721
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 2 cut(s) 31, 523
BspQI GCTCTTC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 571
BssECI CCNNGG 3 cut(s) 121, 231, 552
BssMI GATC 3 cut(s) 23, 515, 603
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 121, 552
Bst2UI CCWGG 2 cut(s) 599, 846
Bst4CI ACNGT 2 cut(s) 198, 371
Bst6I CTCTTC 2 cut(s) 208, 831
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 911
BstC8I GCNNGC 2 cut(s) 549, 595
BstDEI CTNAG 2 cut(s) 285, 746
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 3 cut(s) 55, 163, 910
BstKTI GATC 3 cut(s) 26, 518, 606
BstMAI GTCTC 4 cut(s) 75, 187, 288, 873
BstMBI GATC 3 cut(s) 23, 515, 603
BstMWI GCNNNNNNNGC 5 cut(s) 158, 422, 500, 569, 670
BstNI CCWGG 2 cut(s) 599, 846
BstNSI RCATGY 1 cut(s) 677
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 597, 844
BstSNI TACGTA 1 cut(s) 911
BstV1I GCAGC 3 cut(s) 19, 481, 682
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 2 cut(s) 23, 603
BstYI RGATCY 2 cut(s) 23, 603
BsuRI GGCC 1 cut(s) 551
BtgZI GCGATG 1 cut(s) 701
BtsCI GGATG 3 cut(s) 55, 163, 910
BtsIMutI CAGTG 3 cut(s) 134, 376, 477
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 549, 595
Cfr13I GGNCC 2 cut(s) 245, 398
Csp6I GTAC 3 cut(s) 267, 447, 908
CviAII CATG 4 cut(s) 73, 665, 674, 764
CviJI RGCY 7 cut(s) 99, 425, 494, 551, 597, 614, 865
CviKI_1 RGCY 7 cut(s) 99, 425, 494, 551, 597, 614, 865
CviQI GTAC 3 cut(s) 267, 447, 908
DdeI CTNAG 2 cut(s) 285, 746
DpnI GATC 3 cut(s) 25, 517, 605
DpnII GATC 3 cut(s) 23, 515, 603
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 208, 831
EarI CTCTTC 2 cut(s) 208, 831
Eco105I TACGTA 1 cut(s) 911
Eco130I CCWWGG 2 cut(s) 121, 552
Eco47I GGWCC 2 cut(s) 245, 398
Eco57I CTGAAG 4 cut(s) 189, 273, 314, 871
Eco88I CYCGRG 2 cut(s) 167, 401
Eco91I GGTNACC 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 533
EcoRI GAATTC 2 cut(s) 355, 466
EcoRII CCWGG 2 cut(s) 597, 844
EcoT14I CCWWGG 2 cut(s) 121, 552
ErhI CCWWGG 2 cut(s) 121, 552
Esp3I CGTCTC 2 cut(s) 75, 187
FaeI CATG 4 cut(s) 76, 668, 677, 767
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 411
FatI CATG 4 cut(s) 72, 664, 673, 763
FauNDI CATATG 1 cut(s) 526
Fnu4HI GCNGC 3 cut(s) 33, 495, 671
FokI GGATG 3 cut(s) 62, 170, 917
Fsp4HI GCNGC 3 cut(s) 33, 495, 671
FspBI CTAG 1 cut(s) 866
GluI GCNGC 3 cut(s) 33, 495, 671
HaeIII GGCC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 76, 668, 677, 767
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 5 cut(s) 13, 86, 299, 389, 841
Hpy166II GTNNAC 3 cut(s) 583, 679, 872
Hpy188I TCNGA 7 cut(s) 91, 208, 253, 288, 333, 544, 890
Hpy188III TCNNGA 2 cut(s) 186, 811
Hpy8I GTNNAC 3 cut(s) 583, 679, 872
HpyAV CCTTC 3 cut(s) 258, 583, 812
HpyCH4III ACNGT 2 cut(s) 198, 371
HpyCH4IV ACGT 2 cut(s) 5, 910
HpyCH4V TGCA 8 cut(s) 275, 385, 437, 452, 530, 664, 706, 770
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 422, 500, 569, 670
HpyF3I CTNAG 2 cut(s) 285, 746
HpySE526I ACGT 2 cut(s) 5, 910
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 76, 668, 677, 767
KflI GGGWCCC 1 cut(s) 398
Kzo9I GATC 3 cut(s) 23, 515, 603
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 4 cut(s) 74, 422, 457, 848
Lsp1109I GCAGC 3 cut(s) 19, 481, 682
LweI GCATC 4 cut(s) 40, 148, 424, 693
MaeI CTAG 1 cut(s) 866
MaeII ACGT 2 cut(s) 5, 910
MaeIII GTNAC 1 cut(s) 533
MalI GATC 3 cut(s) 25, 517, 605
MboI GATC 3 cut(s) 23, 515, 603
MboII GAAGA 8 cut(s) 168, 171, 195, 320, 350, 376, 712, 848
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 23, 603
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 6 cut(s) 355, 380, 466, 566, 654, 803
MlyI GAGTC 2 cut(s) 7, 95
MmeI TCCRAC 3 cut(s) 69, 135, 276
MnlI CCTC 5 cut(s) 40, 133, 193, 226, 571
MseI TTAA 6 cut(s) 111, 309, 609, 825, 857, 931
MspR9I CCNGG 2 cut(s) 599, 846
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 2 cut(s) 599, 846
MwoI GCNNNNNNNGC 5 cut(s) 158, 422, 500, 569, 670
NdeI CATATG 1 cut(s) 526
NdeII GATC 3 cut(s) 23, 515, 603
NlaIII CATG 4 cut(s) 76, 668, 677, 767
NlaIV GGNNCC 4 cut(s) 399, 400, 573, 721
NmeAIII GCCGAG 2 cut(s) 79, 256
NspI RCATGY 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 299, 389, 841
PfoI TCCNGGA 1 cut(s) 844
PkrI GCNGC 3 cut(s) 34, 496, 672
PleI GAGTC 2 cut(s) 7, 94
PpsI GAGTC 2 cut(s) 7, 94
Ppu21I YACGTR 1 cut(s) 911
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 597, 844
PspEI GGTNACC 1 cut(s) 533
PspGI CCWGG 2 cut(s) 597, 844
PspN4I GGNNCC 4 cut(s) 399, 400, 573, 721
PspPI GGNCC 2 cut(s) 245, 398
PspPPI RGGWCCY 1 cut(s) 398
PspXI VCTCGAGB 1 cut(s) 167
PsrI GAACNNNNNNTAC 1 cut(s) 904
PsuI RGATCY 2 cut(s) 23, 603
RsaI GTAC 3 cut(s) 268, 448, 909
RsaNI GTAC 3 cut(s) 267, 447, 908
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 6 cut(s) 111, 309, 609, 825, 857, 931
SatI GCNGC 3 cut(s) 33, 495, 671
Sau3AI GATC 3 cut(s) 23, 515, 603
Sau96I GGNCC 2 cut(s) 245, 398
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 2 cut(s) 7, 95
ScrFI CCNGG 2 cut(s) 599, 846
SduI GDGCHC 1 cut(s) 203
SfaNI GCATC 4 cut(s) 40, 148, 424, 693
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 245, 398
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 167, 184
SmoI CTYRAG 2 cut(s) 167, 184
SnaBI TACGTA 1 cut(s) 911
Sse9I AATT 6 cut(s) 355, 380, 466, 566, 654, 803
SsiI CCGC 1 cut(s) 217
SspMI CTAG 1 cut(s) 866
StyD4I CCNGG 2 cut(s) 597, 844
StyI CCWWGG 2 cut(s) 121, 552
TaaI ACNGT 2 cut(s) 198, 371
TaiI ACGT 2 cut(s) 8, 913
TaqI TCGA 2 cut(s) 168, 739
TasI AATT 6 cut(s) 355, 380, 466, 566, 654, 803
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 3 cut(s) 299, 389, 841
Tru1I TTAA 6 cut(s) 111, 309, 609, 825, 857, 931
Tru9I TTAA 6 cut(s) 111, 309, 609, 825, 857, 931
TscAI CASTG 3 cut(s) 134, 376, 477
TseI GCWGC 3 cut(s) 32, 494, 670
TspDTI ATGAA 3 cut(s) 351, 368, 704
TspGWI ACGGA 1 cut(s) 528
TspRI CASTG 3 cut(s) 134, 376, 477
VpaK11BI GGWCC 2 cut(s) 245, 398
XapI RAATTY 3 cut(s) 355, 466, 803
XceI RCATGY 1 cut(s) 677
XhoI CTCGAG 1 cut(s) 167
XspI CTAG 1 cut(s) 866
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.